Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002971.1

Orthogroup ID

OG0007604

Physical Location & Seq

Genomic Coordinates Forward (+)

19093 .. 21154

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002971.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggcggtgacatcatcatcatcctgtaaggagctaggaggtggtgggatgaagatgcaaatggacaatggcaagtacgtgaggtacacgccggagcaagtagaagccttggagaggctctaccatgagtgccccaaacctagctctatgcgccggcagcagctcattcgggagtgcccgattctctccaacatagagccgaagcagatcaaagtctggtttcagaaccggaggtgtagagagaagcagaggaaagaggcgtctagattgcaaacggtgaacagaaagctgacggcgatgaacaagcttttgatggaggaaaacgataggttgcagaaacaggtgtcgcacttggtctacgaaaacagctatttccgccaacagacacagaatacgactctggccacaacagacacaagttgtgagtcggtggtgacaagtggtcaacaccatttgactcctcagcatccaccgagggatgccagccctgctggacttttgtccattgcagaggagactttagcagagtttctttcaaaggccactggaactgctgtggagtgggtccaattgcctggtatgaagcctggtccggattccattggaatcgttgctatttctcacggttgcaccggtgtggcagcacgtgcttgcggcctggtgggtctagaacctacaagggtctctgaaatccttaaagatcgaccctcgtggttccgtaactgtcgatctgtggatgtgctaaacgtgttgtccactggaaatggtggaaccattgaactgctttacatgcagctctatgcacccacaactttggcaccagctcgcgacttctggttgctgcgctatacatctgttttggaagatggtagtcttgtggtctgtgaaagatcacttaacaacactcaaaatggtccaagtatgccaccggtgcagaattttgtgagagcagaaatgctgccgagtgggtatctaattagaccttgtgaaggtggtggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

333

Amino Acids

37.04

Weight (kDa)

8.64

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32880
fragaria_vesca	FvH4_2g35360 FvH4_2g35360 FvH4_2g35360 FvH4_2g35360
malus_domestica	MD08G1112900.v1.1 MD15G1092200.v1.1
prunus_persica	Prupe.1G447100_v2.0.a1 Prupe.1G447100_v2.0.a1
pyrus_communis	pycom08g09360 pycom110g00010 pycom15g08570
rosa_chinensis	RchiOBHm_Chr6g0306551
rosa_laevigata	RLG00000010786
rosa_multiflora	Rmu_sc0002971.1_g000003 Rmu_sc0002971.1_g000004
rosa_roxburghii	Rroxscaffold_7G00161680
rosa_rugosa	Rorug06G0350500 Rorug06G0350500
rosa_samantha	Rh6AG462700 Rh6BG438100 Rh6CG476800 Rh6DG463500
rosa_wichuraiana	Rw6G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	1 cut(s)	828
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	3 cut(s)	5, 376, 654
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	937
AcvI	CACGTG	1 cut(s)	647
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	2 cut(s)	77, 86
AfiI	CCNNNNNNNGG	2 cut(s)	114, 989
AflIII	ACRYGT	1 cut(s)	747
AgeI	ACCGGT	2 cut(s)	632, 928
AgsI	TTSAA	2 cut(s)	537, 779
AhdI	GACNNNNNGTC	1 cut(s)	441
AjnI	CCWGG	3 cut(s)	574, 586, 657
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	8 cut(s)	34, 144, 163, 289, 307, 369, 796, 824
AluI	AGCT	8 cut(s)	34, 144, 163, 289, 307, 369, 796, 824
Alw26I	GTCTC	2 cut(s)	509, 688
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	3 cut(s)	402, 540, 655
ApeKI	GCWGC	6 cut(s)	157, 160, 641, 793, 841, 958
ApoI	RAATTY	1 cut(s)	937
AsiGI	ACCGGT	2 cut(s)	632, 928
AspLEI	GCGC	2 cut(s)	153, 846
AspS9I	GGNCC	3 cut(s)	565, 590, 914
AsuHPI	GGTGA	3 cut(s)	19, 289, 445
AvaII	GGWCC	3 cut(s)	565, 590, 914
BaeGI	GKGCMC	2 cut(s)	134, 179
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	817
BauI	CACGAG	1 cut(s)	709
BbrPI	CACGTG	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	6 cut(s)	169, 172, 653, 805, 828, 945
BccI	CCATC	2 cut(s)	307, 860
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	3 cut(s)	576, 588, 659
BcoDI	GTCTC	2 cut(s)	509, 688
BfaI	CTAG	4 cut(s)	35, 141, 264, 668
BisI	GCNGC	7 cut(s)	158, 161, 642, 655, 794, 842, 959
BlsI	GCNGC	7 cut(s)	159, 162, 643, 656, 795, 843, 960
Bme1390I	CCNGG	3 cut(s)	576, 588, 659
Bme18I	GGWCC	3 cut(s)	565, 590, 914
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgT120I	GGNCC	3 cut(s)	565, 590, 914
BmiI	GGNNCC	4 cut(s)	566, 716, 772, 819
BmrFI	CCNGG	3 cut(s)	576, 588, 659
BmsI	GCATC	3 cut(s)	45, 469, 475
BoxI	GACNNNNGTC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	462
BsaAI	YACGTR	2 cut(s)	79, 647
BsaHI	GRCGYC	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	108, 473
BsaWI	WCCGGW	4 cut(s)	228, 592, 632, 928
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 989
Bse118I	RCCGGY	3 cut(s)	153, 632, 928
Bse1I	ACTGG	2 cut(s)	550, 763
Bse3DI	GCAATG	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	592
BseBI	CCWGG	3 cut(s)	576, 588, 659
BseDI	CCNNGG	2 cut(s)	108, 473
BseGI	GGATG	5 cut(s)	20, 54, 466, 484, 742
BseLI	CCNNNNNNNGG	2 cut(s)	114, 989
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	550, 763
BseRI	GAGGAG	2 cut(s)	450, 527
BseSI	GKGCMC	2 cut(s)	134, 179
BseXI	GCAGC	6 cut(s)	169, 172, 653, 805, 828, 945
BsgI	GTGCAG	1 cut(s)	953
Bsh1236I	CGCG	1 cut(s)	828
BshFI	GGCC	3 cut(s)	404, 542, 657
BshNI	GGYRCC	1 cut(s)	817
BshTI	ACCGGT	2 cut(s)	632, 928
BsiSI	CCGG	6 cut(s)	92, 154, 229, 593, 633, 929
BslI	CCNNNNNNNGG	2 cut(s)	114, 989
BsmAI	GTCTC	2 cut(s)	509, 688
BsnI	GGCC	3 cut(s)	404, 542, 657
Bso31I	GGTCTC	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	134, 179
Bsp13I	TCCGGA	1 cut(s)	592
Bsp143I	GATC	4 cut(s)	207, 700, 728, 890
Bsp68I	TCGCGA	1 cut(s)	828
BspACI	CCGC	3 cut(s)	5, 376, 654
BspANI	GGCC	3 cut(s)	404, 542, 657
BspCNI	CTCAG	1 cut(s)	475
BspEI	TCCGGA	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	4 cut(s)	566, 716, 772, 819
BspT107I	GGYRCC	1 cut(s)	817
BspTNI	GGTCTC	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	3 cut(s)	153, 632, 928
BsrI	ACTGG	2 cut(s)	550, 763
BssAI	RCCGGY	3 cut(s)	153, 632, 928
BssECI	CCNNGG	2 cut(s)	108, 473
BssMI	GATC	4 cut(s)	207, 700, 728, 890
BssNI	GRCGYC	1 cut(s)	260
BssSI	CACGAG	1 cut(s)	709
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	709
Bst2UI	CCWGG	3 cut(s)	576, 588, 659
Bst4CI	ACNGT	3 cut(s)	277, 626, 725
BstACI	GRCGYC	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	2 cut(s)	79, 647
BstC8I	GCNNGC	4 cut(s)	155, 484, 652, 826
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	2 cut(s)	112, 987
BstF5I	GGATG	5 cut(s)	20, 54, 466, 484, 742
BstFNI	CGCG	1 cut(s)	828
BstHHI	GCGC	2 cut(s)	153, 846
BstKTI	GATC	4 cut(s)	210, 703, 731, 893
BstMAI	GTCTC	2 cut(s)	509, 688
BstMBI	GATC	4 cut(s)	207, 700, 728, 890
BstMWI	GCNNNNNNNGC	7 cut(s)	150, 157, 375, 488, 647, 790, 931
BstNI	CCWGG	3 cut(s)	576, 588, 659
BstNSI	RCATGY	1 cut(s)	793
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	574, 586, 657
BstSLI	GKGCMC	2 cut(s)	134, 179
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	6 cut(s)	169, 172, 653, 805, 828, 945
BstXI	CCANNNNNNTGG	2 cut(s)	575, 814
BsuRI	GGCC	3 cut(s)	404, 542, 657
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	5 cut(s)	20, 54, 466, 484, 742
BtsIMutI	CAGTG	2 cut(s)	543, 756
BtuMI	TCGCGA	1 cut(s)	828
Cac8I	GCNNGC	4 cut(s)	155, 484, 652, 826
CfoI	GCGC	2 cut(s)	153, 846
Cfr10I	RCCGGY	3 cut(s)	153, 632, 928
Cfr13I	GGNCC	3 cut(s)	565, 590, 914
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	76, 85
CspAI	ACCGGT	2 cut(s)	632, 928
CviAII	CATG	2 cut(s)	125, 790
CviQI	GTAC	2 cut(s)	76, 85
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	4 cut(s)	209, 702, 730, 892
DpnII	GATC	4 cut(s)	207, 700, 728, 890
DriI	GACNNNNNGTC	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	402
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	688
Eco47I	GGWCC	3 cut(s)	565, 590, 914
Eco72I	CACGTG	1 cut(s)	647
EcoNI	CCTNNNNNAGG	2 cut(s)	112, 987
EcoRII	CCWGG	3 cut(s)	574, 586, 657
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	128, 793
FaiI	YATR	8 cut(s)	126, 149, 194, 581, 791, 801, 849, 923
FatI	CATG	2 cut(s)	124, 789
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	7 cut(s)	158, 161, 642, 655, 794, 842, 959
FokI	GGATG	5 cut(s)	7, 61, 453, 491, 749
Fsp4HI	GCNGC	7 cut(s)	158, 161, 642, 655, 794, 842, 959
FspBI	CTAG	4 cut(s)	35, 141, 264, 668
GlaI	GCGC	2 cut(s)	152, 845
GluI	GCNGC	7 cut(s)	158, 161, 642, 655, 794, 842, 959
HaeIII	GGCC	3 cut(s)	404, 542, 657
HapII	CCGG	6 cut(s)	92, 154, 229, 593, 633, 929
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	2 cut(s)	153, 846
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	128, 793
Hin6I	GCGC	2 cut(s)	151, 844
HinP1I	GCGC	2 cut(s)	151, 844
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	6 cut(s)	181, 397, 425, 457, 596, 606
HpaII	CCGG	6 cut(s)	92, 154, 229, 593, 633, 929
HphI	GGTGA	3 cut(s)	19, 289, 445
Hpy166II	GTNNAC	5 cut(s)	87, 280, 358, 446, 756
Hpy188I	TCNGA	2 cut(s)	225, 688
Hpy188III	TCNNGA	5 cut(s)	170, 264, 593, 668, 827
Hpy8I	GTNNAC	5 cut(s)	87, 280, 358, 446, 756
HpyAV	CCTTC	1 cut(s)	983
HpyCH4III	ACNGT	3 cut(s)	277, 626, 725
HpyCH4IV	ACGT	3 cut(s)	78, 646, 747
HpyCH4V	TGCA	8 cut(s)	58, 271, 334, 509, 630, 793, 803, 934
HpyF10VI	GCNNNNNNNGC	7 cut(s)	150, 157, 375, 488, 647, 790, 931
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	3 cut(s)	78, 646, 747
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	128, 793
HspAI	GCGC	2 cut(s)	151, 844
Kpn2I	TCCGGA	1 cut(s)	592
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	207, 700, 728, 890
LmnI	GCTCC	2 cut(s)	31, 94
Lsp1109I	GCAGC	6 cut(s)	169, 172, 653, 805, 828, 945
LweI	GCATC	3 cut(s)	45, 469, 475
MaeI	CTAG	4 cut(s)	35, 141, 264, 668
MaeII	ACGT	3 cut(s)	78, 646, 747
MaeIII	GTNAC	3 cut(s)	7, 433, 719
MalI	GATC	4 cut(s)	209, 702, 730, 892
MboI	GATC	4 cut(s)	207, 700, 728, 890
MboII	GAAGA	2 cut(s)	64, 875
MfeI	CAATTG	1 cut(s)	569
MhlI	GDGCHC	2 cut(s)	134, 179
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	3 cut(s)	569, 937, 975
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	3 cut(s)	391, 434, 451
MmeI	TCCRAC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	404
MroI	TCCGGA	1 cut(s)	592
MroNI	GCCGGC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	2 cut(s)	696, 897
MslI	CAYNNNNRTG	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	6 cut(s)	92, 154, 229, 593, 633, 929
MspR9I	CCNGG	3 cut(s)	576, 588, 659
MunI	CAATTG	1 cut(s)	569
MvaI	CCWGG	3 cut(s)	576, 588, 659
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	7 cut(s)	150, 157, 375, 488, 647, 790, 931
NaeI	GCCGGC	1 cut(s)	155
NdeII	GATC	4 cut(s)	207, 700, 728, 890
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	128, 793
NlaIV	GGNNCC	4 cut(s)	566, 716, 772, 819
NmeAIII	GCCGAG	1 cut(s)	987
NmuCI	GTSAC	2 cut(s)	7, 433
NruI	TCGCGA	1 cut(s)	828
NspI	RCATGY	1 cut(s)	793
OliI	CACNNNNGTG	1 cut(s)	635
PdiI	GCCGGC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	181, 596, 606
PinAI	ACCGGT	2 cut(s)	632, 928
PkrI	GCNGC	7 cut(s)	159, 162, 643, 656, 795, 843, 960
PleI	GAGTC	3 cut(s)	391, 433, 451
PmaCI	CACGTG	1 cut(s)	647
PmlI	CACGTG	1 cut(s)	647
PpsI	GAGTC	3 cut(s)	391, 433, 451
Ppu21I	YACGTR	2 cut(s)	79, 647
PshAI	GACNNNNGTC	1 cut(s)	499
Psp6I	CCWGG	3 cut(s)	574, 586, 657
PspCI	CACGTG	1 cut(s)	647
PspGI	CCWGG	3 cut(s)	574, 586, 657
PspN4I	GGNNCC	4 cut(s)	566, 716, 772, 819
PspPI	GGNCC	3 cut(s)	565, 590, 914
RruI	TCGCGA	1 cut(s)	828
RsaI	GTAC	2 cut(s)	77, 86
RsaNI	GTAC	2 cut(s)	76, 85
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	696, 897
SatI	GCNGC	7 cut(s)	158, 161, 642, 655, 794, 842, 959
Sau3AI	GATC	4 cut(s)	207, 700, 728, 890
Sau96I	GGNCC	3 cut(s)	565, 590, 914
SchI	GAGTC	3 cut(s)	391, 434, 451
ScrFI	CCNGG	3 cut(s)	576, 588, 659
SduI	GDGCHC	2 cut(s)	134, 179
SfaNI	GCATC	3 cut(s)	45, 469, 475
SgrAI	CRCCGGYG	2 cut(s)	632, 928
SinI	GGWCC	3 cut(s)	565, 590, 914
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	3 cut(s)	569, 937, 975
SsiI	CCGC	3 cut(s)	5, 376, 654
SspMI	CTAG	4 cut(s)	35, 141, 264, 668
StyD4I	CCNGG	3 cut(s)	574, 586, 657
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	277, 626, 725
TaiI	ACGT	3 cut(s)	81, 649, 750
TaqI	TCGA	2 cut(s)	703, 727
TasI	AATT	3 cut(s)	569, 937, 975
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	3 cut(s)	181, 596, 606
Tru1I	TTAA	2 cut(s)	696, 897
Tru9I	TTAA	2 cut(s)	696, 897
TscAI	CASTG	2 cut(s)	550, 763
TseFI	GTSAC	2 cut(s)	7, 433
TseI	GCWGC	6 cut(s)	157, 160, 641, 793, 841, 958
Tsp45I	GTSAC	2 cut(s)	7, 433
TspDTI	ATGAA	3 cut(s)	65, 314, 596
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	550, 763
VpaK11BI	GGWCC	3 cut(s)	565, 590, 914
XagI	CCTNNNNNAGG	2 cut(s)	112, 987
XapI	RAATTY	1 cut(s)	937
XbaI	TCTAGA	2 cut(s)	263, 667
XceI	RCATGY	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	4 cut(s)	35, 141, 264, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.