Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007604

Physical Location & Seq

Genomic Coordinates Forward (+)

4377720 .. 4388512

Gene Structure 10793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

ATGGAGAAGAAGCAAAGCAAACCAATGGAGTTGTTAAACGAGATGGTATCAGAGCCCTACCATCTCCTCCATTTCTTGGCCTTCTTCTCTTACTTTGTAATTCGCACTTCCGCTGCCCAAGTCCTCTCTCCCCAAATCACCTCCCGTCTCTTTCTCCGGGAAATCCAAGCCGCTTTGGCCTTGGGTGTCTTCGCTGCCATCAAGGTTGTGAGGGAAGAAAACTGGGAGGCTTTTATTTCAGATACTCTCTTCTTTGCAAAGATTTTTCTTCTTGCCCTTACTTTGATAATGGATTACCACTTGACTCTCTGGTACACAGTGATATTTGCAGGGATATATATTTTCACACAACAGCCGCCGGCCTTTAAAAAATTAGGTACTTCCAGTAAAATAACACCGTTGCAGCTGGAAAGCTTGCTGACCGAAGGGAGCACATCGAGACTTTGGCTGGTTGAATTTCGTGCTGCATATTCACCTTCTTGCATACGCTCAAGTCGGTGCTTTCCTGAGCTTTCAATCACATATTCAAACAAAAGCTTTTCTTTCGGAATAGTTGACCTTGGCCTCTTCCCAAATGCTGCAGAGTTTTTTGGAATATCACTCTCTGGAAGCATGGGTCAACTTCCTGCGTGTATATTATTCTCGCATGGATCTGAAGTCGCTCGCTATCCAGACTTAAATGTTGAATCAAAAGGTTCTCATTCCCCCATAACTAAGAGATTTCTTTCGCGGTACTTCAAACTTGACCTGCACCTTCTTGAGTATATAAATGAAAGGGAGGATTTACCATTGGGTTCATGCAGAGATGAAGATAATGAGGCAGTAGGAGGGCAATTTCTTAGCATGGCGGTGACATCATCATCATCGTGTAAGGAGCTAGGAGGTGGTGGGATGAAGATGCAAATGGACAATGGCAAGTACGTGAGGTACACGCCGGAGCAAGTAGAAGCCTTGGAGAGGCTCTACCATGAGTGCCCCAAACCGAGCTCTATGCGCCGGCAGCAGCTCATTCGGGAGTGCCCGATTCTCTCCAACATAGAGCCGAAGCAGATCAAAGTCTGGTTTCAGAACCGGAGGTGTAGAGAGAAGCAGAGGAAAGAGGCGTCTAGATTGCAAACGGTGAACAGAAAGCTGACGGCGATGAACAAGCTTTTGATGGAGGAAAACGATAGGTTGCAGAAACAGGTGTCGCACTTGGTCTACGAAAACAGCTATTTCCGCCAACAGACACAGAATACGACTCTGGCGACAACAGACACAAGTTGTGAGTCGGTGGTGACAAGTGGTCAACACCATTTGACTCCTCAGCATCCACCGAGGGATGCCAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAATTGCCTGGTATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCACCGGTGTGGCAGCACGTGCTTGCGGCCTGGTGGGTCTAGAACCTACAAGGGTGAGTTCTTCTCCACCTGGCCTGGTCTCTGAAATACTTAAAGATCGACCCTCGTGGTTCCGTAATTGTCGATCTGTGGATGTGCTAAATGTGTTGTCCACTGGAAATGGTGGAACCATTGAACTGCTTTACATGCAGCTCTATGCACCCACAACTTTGGCACCAGCTCGCGACTTCTGGTTGCTGCGCTATACATCTGTTTTGGAAGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAAAATGGTCCAAGTATGCCACCAGTGCAGAATTTTGTGAGAGCAGAAATGCTGCCGAGTGGGTATCTAATTAGACCTTGTGAAGGTGGTGGATCAATCATCCACATTGTTGATCATATGGATTTAGAGCCTTGGAGTGTACCTGAAGTCTTGCGCCCGCTTTATGAGTCTTCAACACTTCTCGCTCAGAAGACAACTATGGCGGCTTTACGCAATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCTAATTCCAATGGTTGGGGAAGGAGGCCTGCAGCTCTACGCGCTCTTAGTCAAAGATTGAGCAAGGGTTTCAACGAAGCAGTGAATGGGTTTACAGATGAGGGATGGTCTATTTTAGAAAGTGATGGTGTTGATGACATTACCCTTCTTGTGAACTCGTCTCCAGGAAAGATGATGGGTGCAAATCTTTATGCCAATGGAGTTCCATCTATGAGCAATGCAGTGTTATGTGCCAAAGCATCTATGTTACTCCAAAATGTTCCTCCAGCCATACTTCTTAGATTCTTGCGAGAACACCGATCAGAGTGGGCTGACAGAAGTATTGATGCGTATTCAGCTGCTGCTATTAAAGCTGGTCCATGTGGCATGCTAGGTTCTCGAGCTGGAAGTTTCGGGGATCAAGTTATTCTTCCACTGGCTCACACAATAGAACATGAAGAGTTCATGGAGGTCATTAAGATTGAAAATATGGGTCACTACCGGGACGATATGATGATGCCTGCAGCTGACATTTTCCTCTTGCAACTGTGTAGTGGAGTGGATGAGAATGCTGTTGGCACCTGTGCCGAGCTTGTCTTTGCTCCTATTGATGCCTCTTTTTCTGATGATGCTCCAATTCTACCATCTGGTTTTCGCATCATTCCTCTTGATTCTCACATGGATGCCCCCAGTCCAAACCGTACGCTTGATCTTGCCTCTGCTCTTGAAATTGGACCGACAGGAAACAGATCATCTGGTGATAATGCTGGTCACTGTGGGAATACAAAATCTGTTATGACAATAGCATTCCAATTTGCATTTGAAATTCATCTTCAAGATAATGTAGCGTCCATGGCAAGGCAGTATATCCGTAGTATTATAGCAGCAGTGCAGAGGGTGGCACTGGCACTCTCCCCTTCTCGTTTTGGTTCTCATACTGGTTTTCGGCCACCACCTGGCACTCCTGAAGCACAAACACTAGCTGGTTGGATCTGTCAGAGCTATAGGTGCTATCTAGGGGTAGAACTACTAAAAAGCGAAGGAAGCGAGTCCGTTCTCAAATCCCTCTGGCATCACTCAGATGCAATCTTATGCTGCTCTTTGAAGGCTTTGCCAGTATTTACATTTGCAAACCAGGCAGGCCTCGACATGCTTGAGACCACCTTGGTTGCACTTCAAGACATTACACTGGAAAAGATTTTCGATGACAATGGAAGGAAGATCCTGTTTACTGAGTTCCCACAGATCATGCAGCAGGGTTTTATGTGTCTACAAGGTGGTATATGCATGTCAAGCATGGGAAGACCAATCTCTTATGAGAGAGCAGTGGCGTGGAAGGTGTTGAATGAAGAAGAAACTGCTCACTGTATCTGCTTCATGTTCATCAACTGGTCATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

1133

Amino Acids

125.46

Weight (kDa)

5.98

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	306 - 364	6.7e-16	Homeodomain
START	PF01852	450 - 666	1.3e-51	START domain
MEKHLA	PF08670	992 - 1132	7.9e-47	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32880
fragaria_vesca	FvH4_2g35360 FvH4_2g35360 FvH4_2g35360 FvH4_2g35360
malus_domestica	MD08G1112900.v1.1 MD15G1092200.v1.1
prunus_persica	Prupe.1G447100_v2.0.a1 Prupe.1G447100_v2.0.a1
pyrus_communis	pycom08g09360 pycom110g00010 pycom15g08570
rosa_chinensis	RchiOBHm_Chr6g0306551
rosa_laevigata	RLG00000010786
rosa_multiflora	Rmu_sc0002971.1_g000003 Rmu_sc0002971.1_g000004
rosa_roxburghii	Rroxscaffold_7G00161680
rosa_rugosa	Rorug06G0350500 Rorug06G0350500
rosa_samantha	Rh6AG462700 Rh6BG438100 Rh6CG476800 Rh6DG463500
rosa_wichuraiana	Rw6G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	756
AccB1I	GGYRCC	2 cut(s)	1684, 2576
AccB7I	CCANNNNNTGG	3 cut(s)	76, 2034, 2954
AccI	GTMKAC	2 cut(s)	1200, 3268
AccII	CGCG	3 cut(s)	730, 1695, 2061
AccIII	TCCGGA	1 cut(s)	1435
AciI	CCGC	9 cut(s)	111, 171, 356, 730, 848, 1219, 1497, 1931, 1976
AclWI	GGATC	5 cut(s)	658, 1873, 2424, 2996, 3214
AcoI	YGGCCR	1 cut(s)	2945
AcsI	RAATTY	3 cut(s)	455, 1804, 2823
AcuI	CTGAAG	3 cut(s)	675, 1938, 2985
AcvI	CACGTG	1 cut(s)	1490
AcyI	GRCGYC	1 cut(s)	1103
AfaI	GTAC	7 cut(s)	314, 379, 734, 920, 929, 1914, 2701
AfiI	CCNNNNNNNGG	6 cut(s)	76, 957, 1856, 2034, 2856, 2954
AgeI	ACCGGT	1 cut(s)	1475
AhdI	GACNNNNNGTC	1 cut(s)	1284
AjnI	CCWGG	8 cut(s)	1417, 1429, 1500, 1540, 1545, 2182, 2953, 3132
AleI	CACNNNNGTG	1 cut(s)	1478
Alw21I	GWGCWC	2 cut(s)	434, 989
Alw26I	GTCTC	6 cut(s)	152, 433, 1352, 1555, 2184, 3149
AlwI	GGATC	5 cut(s)	658, 1873, 2424, 2996, 3214
AlwNI	CAGNNNCTG	1 cut(s)	2360
Ama87I	CYCGRG	1 cut(s)	2397
Aor13HI	TCCGGA	1 cut(s)	1435
ApoI	RAATTY	3 cut(s)	455, 1804, 2823
AsiGI	ACCGGT	1 cut(s)	1475
AspLEI	GCGC	4 cut(s)	996, 1713, 1929, 2063
AspS9I	GGNCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
AsuC2I	CCSGG	2 cut(s)	158, 2501
AsuHPI	GGTGA	7 cut(s)	130, 465, 862, 1132, 1288, 1537, 2768
AvaI	CYCGRG	1 cut(s)	2397
AvaII	GGWCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
BaeGI	GKGCMC	2 cut(s)	977, 1022
BanI	GGYRCC	2 cut(s)	1684, 2576
BanII	GRGCYC	2 cut(s)	57, 989
BauI	CACGAG	1 cut(s)	1576
BbrPI	CACGTG	1 cut(s)	1490
BbsI	GAAGAC	4 cut(s)	181, 1935, 1970, 3307
Bbv12I	GWGCWC	2 cut(s)	434, 989
BbvCI	CCTCAGC	1 cut(s)	1305
BceAI	ACGGC	1 cut(s)	1152
BcgI	CGANNNNNNTGC	4 cut(s)	973, 992, 1007, 1026
BciT130I	CCWGG	8 cut(s)	1419, 1431, 1502, 1542, 1547, 2184, 2955, 3134
BclI	TGATCA	1 cut(s)	1885
BcnI	CCSGG	2 cut(s)	158, 2501
BcoDI	GTCTC	6 cut(s)	152, 433, 1352, 1555, 2184, 3149
BfaI	CTAG	6 cut(s)	878, 1107, 1511, 2390, 2978, 3014
BfmI	CTRYAG	4 cut(s)	579, 2049, 2520, 3001
BfuAI	ACCTGC	1 cut(s)	756
BglI	GCCNNNNNGGC	1 cut(s)	176
Bme18I	GGWCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
BmeRI	GACNNNNNGTC	1 cut(s)	1284
BmeT110I	CYCGRG	1 cut(s)	2397
BmgT120I	GGNCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
BmiI	GGNNCC	5 cut(s)	1409, 1583, 1639, 1686, 2578
BmrI	ACTGGG	2 cut(s)	232, 2682
BmuI	ACTGGG	2 cut(s)	232, 2682
BoxI	GACNNNNGTC	1 cut(s)	1342
BpiI	GAAGAC	4 cut(s)	181, 1935, 1970, 3307
BplI	GAGNNNNNCTC	2 cut(s)	1519, 1551
BpmI	CTGGAG	2 cut(s)	2166, 2268
Bpu10I	CCTNAGC	2 cut(s)	507, 1305
BpuEI	CTTGAG	4 cut(s)	475, 779, 1989, 3173
BpuMI	CCSGG	2 cut(s)	158, 2501
BsaAI	YACGTR	2 cut(s)	922, 1490
BsaHI	GRCGYC	1 cut(s)	1103
BsaI	GGTCTC	2 cut(s)	1555, 3149
BsaJI	CCNNGG	7 cut(s)	180, 559, 951, 1316, 1904, 2850, 3162
BsaWI	WCCGGW	3 cut(s)	1071, 1435, 1475
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 957, 1856, 2034, 2856, 2954
Bse118I	RCCGGY	3 cut(s)	358, 996, 1475
Bse3DI	GCAATG	2 cut(s)	1347, 2242
BseAI	TCCGGA	1 cut(s)	1435
BseBI	CCWGG	8 cut(s)	1419, 1431, 1502, 1542, 1547, 2184, 2955, 3134
BseDI	CCNNGG	7 cut(s)	180, 559, 951, 1316, 1904, 2850, 3162
BseGI	GGATG	8 cut(s)	897, 1309, 1327, 1609, 1872, 2129, 2566, 2686
BseLI	CCNNNNNNNGG	6 cut(s)	76, 957, 1856, 2034, 2856, 2954
BseMI	GCAATG	2 cut(s)	1347, 2242
BseMII	CTCAG	6 cut(s)	498, 1319, 1973, 2030, 3090, 3222
BseRI	GAGGAG	3 cut(s)	56, 1293, 1370
BseSI	GKGCMC	2 cut(s)	977, 1022
BsgI	GTGCAG	3 cut(s)	734, 1820, 2909
Bsh1236I	CGCG	3 cut(s)	730, 1695, 2061
BshNI	GGYRCC	2 cut(s)	1684, 2576
BshTI	ACCGGT	1 cut(s)	1475
BsiHKAI	GWGCWC	2 cut(s)	434, 989
BsiHKCI	CYCGRG	1 cut(s)	2397
BsiSI	CCGG	8 cut(s)	157, 359, 935, 997, 1072, 1436, 1476, 2500
BsiWI	CGTACG	1 cut(s)	2699
BslFI	GGGAC	1 cut(s)	2516
BslI	CCNNNNNNNGG	6 cut(s)	76, 957, 1856, 2034, 2856, 2954
BsmAI	GTCTC	6 cut(s)	152, 433, 1352, 1555, 2184, 3149
BsmBI	CGTCTC	2 cut(s)	152, 2184
BsmFI	GGGAC	1 cut(s)	2516
BsmI	GAATGC	2 cut(s)	2572, 2804
Bso31I	GGTCTC	2 cut(s)	1555, 3149
BsoBI	CYCGRG	1 cut(s)	2397
Bsp1286I	GDGCHC	5 cut(s)	57, 434, 977, 989, 1022
Bsp13I	TCCGGA	1 cut(s)	1435
Bsp19I	CCATGG	1 cut(s)	2850
Bsp68I	TCGCGA	1 cut(s)	1695
BspACI	CCGC	9 cut(s)	111, 171, 356, 730, 848, 1219, 1497, 1931, 1976
BspCNI	CTCAG	6 cut(s)	499, 1318, 1972, 2029, 3089, 3223
BspEI	TCCGGA	1 cut(s)	1435
BspFNI	CGCG	3 cut(s)	730, 1695, 2061
BspLI	GGNNCC	5 cut(s)	1409, 1583, 1639, 1686, 2578
BspMAI	CTGCAG	3 cut(s)	583, 2053, 2524
BspMI	ACCTGC	1 cut(s)	756
BspPI	GGATC	5 cut(s)	658, 1873, 2424, 2996, 3214
BspT107I	GGYRCC	2 cut(s)	1684, 2576
BspTNI	GGTCTC	2 cut(s)	1555, 3149
BsrDI	GCAATG	2 cut(s)	1347, 2242
BsrFI	RCCGGY	3 cut(s)	358, 996, 1475
BssAI	RCCGGY	3 cut(s)	358, 996, 1475
BssECI	CCNNGG	7 cut(s)	180, 559, 951, 1316, 1904, 2850, 3162
BssNI	GRCGYC	1 cut(s)	1103
BssSI	CACGAG	1 cut(s)	1576
BssT1I	CCWWGG	6 cut(s)	180, 559, 951, 1904, 2850, 3162
Bst2BI	CACGAG	1 cut(s)	1576
Bst2UI	CCWGG	8 cut(s)	1419, 1431, 1502, 1542, 1547, 2184, 2955, 3134
Bst4CI	ACNGT	8 cut(s)	319, 399, 1120, 1469, 2547, 2699, 2774, 3365
Bst6I	CTCTTC	3 cut(s)	254, 572, 2451
BstACI	GRCGYC	1 cut(s)	1103
BstAPI	GCANNNNNTGC	1 cut(s)	1490
BstBAI	YACGTR	2 cut(s)	922, 1490
BstDSI	CCRYGG	1 cut(s)	2850
BstENI	CCTNNNNNAGG	2 cut(s)	955, 1854
BstF5I	GGATG	8 cut(s)	897, 1309, 1327, 1609, 1872, 2129, 2566, 2686
BstFNI	CGCG	3 cut(s)	730, 1695, 2061
BstHHI	GCGC	4 cut(s)	996, 1713, 1929, 2063
BstMAI	GTCTC	6 cut(s)	152, 433, 1352, 1555, 2184, 3149
BstNI	CCWGG	8 cut(s)	1419, 1431, 1502, 1542, 1547, 2184, 2955, 3134
BstNSI	RCATGY	4 cut(s)	1660, 2389, 3151, 3289
BstPAI	GACNNNNGTC	1 cut(s)	1342
BstSFI	CTRYAG	4 cut(s)	579, 2049, 2520, 3001
BstSLI	GKGCMC	2 cut(s)	977, 1022
BstUI	CGCG	3 cut(s)	730, 1695, 2061
BstV2I	GAAGAC	4 cut(s)	181, 1935, 1970, 3307
BstX2I	RGATCY	3 cut(s)	650, 2988, 3219
BstXI	CCANNNNNNTGG	2 cut(s)	1418, 1681
BstYI	RGATCY	3 cut(s)	650, 2988, 3219
BtgI	CCRYGG	1 cut(s)	2850
BtgZI	GCGATG	1 cut(s)	1154
BtsCI	GGATG	8 cut(s)	897, 1309, 1327, 1609, 1872, 2129, 2566, 2686
BtsI	GCAGTG	4 cut(s)	2106, 2247, 2892, 3330
BtuMI	TCGCGA	1 cut(s)	1695
BveI	ACCTGC	1 cut(s)	756
CaiI	CAGNNNCTG	1 cut(s)	2360
CfoI	GCGC	4 cut(s)	996, 1713, 1929, 2063
Cfr10I	RCCGGY	3 cut(s)	358, 996, 1475
Cfr13I	GGNCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
CseI	GACGC	2 cut(s)	1092, 2835
Csp6I	GTAC	7 cut(s)	313, 378, 733, 919, 928, 1913, 2700
CspAI	ACCGGT	1 cut(s)	1475
CspCI	CAANNNNNGTGG	2 cut(s)	3148, 3183
CviQI	GTAC	7 cut(s)	313, 378, 733, 919, 928, 1913, 2700
DraI	TTTAAA	1 cut(s)	367
DriI	GACNNNNNGTC	1 cut(s)	1284
EaeI	YGGCCR	1 cut(s)	2945
Eam1104I	CTCTTC	3 cut(s)	254, 572, 2451
Eam1105I	GACNNNNNGTC	1 cut(s)	1284
EarI	CTCTTC	3 cut(s)	254, 572, 2451
EciI	GGCGGA	1 cut(s)	1208
Ecl136II	GAGCTC	1 cut(s)	987
Eco130I	CCWWGG	6 cut(s)	180, 559, 951, 1904, 2850, 3162
Eco147I	AGGCCT	2 cut(s)	2047, 3141
Eco24I	GRGCYC	2 cut(s)	57, 989
Eco31I	GGTCTC	2 cut(s)	1555, 3149
Eco47I	GGWCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
Eco53kI	GAGCTC	1 cut(s)	987
Eco57I	CTGAAG	3 cut(s)	675, 1938, 2985
Eco72I	CACGTG	1 cut(s)	1490
Eco88I	CYCGRG	1 cut(s)	2397
EcoICRI	GAGCTC	1 cut(s)	987
EcoNI	CCTNNNNNAGG	2 cut(s)	955, 1854
EcoRII	CCWGG	8 cut(s)	1417, 1429, 1500, 1540, 1545, 2182, 2953, 3132
EcoT14I	CCWWGG	6 cut(s)	180, 559, 951, 1904, 2850, 3162
EcoT22I	ATGCAT	1 cut(s)	3287
EcoT38I	GRGCYC	2 cut(s)	57, 989
ErhI	CCWWGG	6 cut(s)	180, 559, 951, 1904, 2850, 3162
Esp3I	CGTCTC	2 cut(s)	152, 2184
FalI	AAGNNNNNCTT	4 cut(s)	526, 558, 2412, 2444
FaqI	GGGAC	1 cut(s)	2516
FauI	CCCGC	1 cut(s)	1938
FauNDI	CATATG	1 cut(s)	1890
FbaI	TGATCA	1 cut(s)	1885
FblI	GTMKAC	2 cut(s)	1200, 3268
FokI	GGATG	8 cut(s)	904, 1296, 1334, 1616, 1859, 2136, 2573, 2693
FriOI	GRGCYC	2 cut(s)	57, 989
FspBI	CTAG	6 cut(s)	878, 1107, 1511, 2390, 2978, 3014
GlaI	GCGC	4 cut(s)	995, 1712, 1928, 2062
GsuI	CTGGAG	2 cut(s)	2166, 2268
HapII	CCGG	8 cut(s)	157, 359, 935, 997, 1072, 1436, 1476, 2500
HgaI	GACGC	2 cut(s)	1092, 2835
HhaI	GCGC	4 cut(s)	996, 1713, 1929, 2063
Hin1I	GRCGYC	1 cut(s)	1103
Hin6I	GCGC	4 cut(s)	994, 1711, 1927, 2061
HinP1I	GCGC	4 cut(s)	994, 1711, 1927, 2061
HincII	GTYRAC	3 cut(s)	556, 620, 1289
HindII	GTYRAC	3 cut(s)	556, 620, 1289
HindIII	AAGCTT	3 cut(s)	412, 535, 1148
HpaII	CCGG	8 cut(s)	157, 359, 935, 997, 1072, 1436, 1476, 2500
HphI	GGTGA	7 cut(s)	130, 465, 862, 1132, 1288, 1537, 2768
HpyCH4III	ACNGT	8 cut(s)	319, 399, 1120, 1469, 2547, 2699, 2774, 3365
HpyCH4IV	ACGT	2 cut(s)	921, 1489
HpySE526I	ACGT	2 cut(s)	921, 1489
Hsp92I	GRCGYC	1 cut(s)	1103
HspAI	GCGC	4 cut(s)	994, 1711, 1927, 2061
Kpn2I	TCCGGA	1 cut(s)	1435
KroI	GCCGGC	2 cut(s)	358, 996
KroNI	GCCGGC	2 cut(s)	360, 998
Ksp22I	TGATCA	1 cut(s)	1885
LmnI	GCTCC	5 cut(s)	429, 874, 937, 2605, 2635
MaeI	CTAG	6 cut(s)	878, 1107, 1511, 2390, 2978, 3014
MaeII	ACGT	2 cut(s)	921, 1489
MaeIII	GTNAC	5 cut(s)	850, 1276, 2265, 2492, 2768
MfeI	CAATTG	1 cut(s)	1412
MflI	RGATCY	3 cut(s)	650, 2988, 3219
MhlI	GDGCHC	5 cut(s)	57, 434, 977, 989, 1022
MlyI	GAGTC	6 cut(s)	298, 1234, 1277, 1294, 1949, 3056
MmeI	TCCRAC	2 cut(s)	1056, 2966
Mph1103I	ATGCAT	1 cut(s)	3287
MroI	TCCGGA	1 cut(s)	1435
MroNI	GCCGGC	2 cut(s)	358, 996
MseI	TTAA	8 cut(s)	35, 366, 677, 1563, 1764, 2367, 2475, 3400
MslI	CAYNNNNRTG	5 cut(s)	848, 865, 1478, 2679, 3078
MspA1I	CMGCKG	4 cut(s)	113, 406, 2357, 2525
MspI	CCGG	8 cut(s)	157, 359, 935, 997, 1072, 1436, 1476, 2500
MunI	CAATTG	1 cut(s)	1412
Mva1269I	GAATGC	2 cut(s)	2572, 2804
MvaI	CCWGG	8 cut(s)	1419, 1431, 1502, 1542, 1547, 2184, 2955, 3134
MvnI	CGCG	3 cut(s)	730, 1695, 2061
NaeI	GCCGGC	2 cut(s)	360, 998
NciI	CCSGG	2 cut(s)	158, 2501
NcoI	CCATGG	1 cut(s)	2850
NdeI	CATATG	1 cut(s)	1890
NgoMIV	GCCGGC	2 cut(s)	358, 996
NlaIV	GGNNCC	5 cut(s)	1409, 1583, 1639, 1686, 2578
NmeAIII	GCCGAG	2 cut(s)	1854, 2611
NmuCI	GTSAC	4 cut(s)	850, 1276, 2492, 2768
NruI	TCGCGA	1 cut(s)	1695
NsiI	ATGCAT	1 cut(s)	3287
NspI	RCATGY	4 cut(s)	1660, 2389, 3151, 3289
OliI	CACNNNNGTG	1 cut(s)	1478
PaeI	GCATGC	1 cut(s)	2389
PaeR7I	CTCGAG	1 cut(s)	2397
PceI	AGGCCT	2 cut(s)	2047, 3141
PcsI	WCGNNNNNNNCGW	1 cut(s)	1244
PctI	GAATGC	2 cut(s)	2572, 2804
PdiI	GCCGGC	2 cut(s)	360, 998
PfeI	GAWTC	6 cut(s)	686, 1024, 1439, 1449, 2301, 2669
Pfl23II	CGTACG	1 cut(s)	2699
PflMI	CCANNNNNTGG	3 cut(s)	76, 2034, 2954
PfoI	TCCNGGA	2 cut(s)	156, 2182
PinAI	ACCGGT	1 cut(s)	1475
PleI	GAGTC	6 cut(s)	298, 1234, 1276, 1294, 1948, 3055
PmaCI	CACGTG	1 cut(s)	1490
PmlI	CACGTG	1 cut(s)	1490
PpsI	GAGTC	6 cut(s)	298, 1234, 1276, 1294, 1948, 3055
Ppu21I	YACGTR	2 cut(s)	922, 1490
PshAI	GACNNNNGTC	1 cut(s)	1342
Psp124BI	GAGCTC	1 cut(s)	989
Psp6I	CCWGG	8 cut(s)	1417, 1429, 1500, 1540, 1545, 2182, 2953, 3132
PspCI	CACGTG	1 cut(s)	1490
PspGI	CCWGG	8 cut(s)	1417, 1429, 1500, 1540, 1545, 2182, 2953, 3132
PspLI	CGTACG	1 cut(s)	2699
PspN4I	GGNNCC	5 cut(s)	1409, 1583, 1639, 1686, 2578
PspPI	GGNCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
PstI	CTGCAG	3 cut(s)	583, 2053, 2524
PstNI	CAGNNNCTG	1 cut(s)	2360
PsuI	RGATCY	3 cut(s)	650, 2988, 3219
PvuII	CAGCTG	3 cut(s)	406, 2357, 2525
RruI	TCGCGA	1 cut(s)	1695
RsaI	GTAC	7 cut(s)	314, 379, 734, 920, 929, 1914, 2701
RsaNI	GTAC	7 cut(s)	313, 378, 733, 919, 928, 1913, 2700
RseI	CAYNNNNRTG	5 cut(s)	848, 865, 1478, 2679, 3078
SacI	GAGCTC	1 cut(s)	989
SaqAI	TTAA	8 cut(s)	35, 366, 677, 1563, 1764, 2367, 2475, 3400
Sau96I	GGNCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
SchI	GAGTC	6 cut(s)	298, 1234, 1277, 1294, 1949, 3056
SduI	GDGCHC	5 cut(s)	57, 434, 977, 989, 1022
SfcI	CTRYAG	4 cut(s)	579, 2049, 2520, 3001
Sfr274I	CTCGAG	1 cut(s)	2397
SgrAI	CRCCGGYG	1 cut(s)	1475
SinI	GGWCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
SlaI	CTCGAG	1 cut(s)	2397
SmiMI	CAYNNNNRTG	5 cut(s)	848, 865, 1478, 2679, 3078
SmlI	CTYRAG	5 cut(s)	490, 758, 2004, 2397, 3152
SmoI	CTYRAG	5 cut(s)	490, 758, 2004, 2397, 3152
SphI	GCATGC	1 cut(s)	2389
SseBI	AGGCCT	2 cut(s)	2047, 3141
SsiI	CCGC	9 cut(s)	111, 171, 356, 730, 848, 1219, 1497, 1931, 1976
SspMI	CTAG	6 cut(s)	878, 1107, 1511, 2390, 2978, 3014
SstI	GAGCTC	1 cut(s)	989
StuI	AGGCCT	2 cut(s)	2047, 3141
StyI	CCWWGG	6 cut(s)	180, 559, 951, 1904, 2850, 3162
TaaI	ACNGT	8 cut(s)	319, 399, 1120, 1469, 2547, 2699, 2774, 3365
TaiI	ACGT	2 cut(s)	924, 1492
TaqI	TCGA	6 cut(s)	437, 1570, 1594, 2398, 3144, 3201
TaqII	GACCGA	2 cut(s)	437, 2749
TauI	GCSGC	4 cut(s)	173, 358, 1500, 1979
TfiI	GAWTC	6 cut(s)	686, 1024, 1439, 1449, 2301, 2669
Tru1I	TTAA	8 cut(s)	35, 366, 677, 1563, 1764, 2367, 2475, 3400
Tru9I	TTAA	8 cut(s)	35, 366, 677, 1563, 1764, 2367, 2475, 3400
TseFI	GTSAC	4 cut(s)	850, 1276, 2492, 2768
Tsp45I	GTSAC	4 cut(s)	850, 1276, 2492, 2768
TspGWI	ACGGA	3 cut(s)	1574, 2858, 3040
Van91I	CCANNNNNTGG	3 cut(s)	76, 2034, 2954
VpaK11BI	GGWCC	5 cut(s)	1408, 1433, 1781, 2375, 2732
XagI	CCTNNNNNAGG	2 cut(s)	955, 1854
XapI	RAATTY	3 cut(s)	455, 1804, 2823
XbaI	TCTAGA	2 cut(s)	1106, 1510
XceI	RCATGY	4 cut(s)	1660, 2389, 3151, 3289
XhoI	CTCGAG	1 cut(s)	2397
XmiI	GTMKAC	2 cut(s)	1200, 3268
XspI	CTAG	6 cut(s)	878, 1107, 1511, 2390, 2978, 3014
Zsp2I	ATGCAT	1 cut(s)	3287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.