Prupe.1G459500_v2.0.a1

peptidyl-tRNA hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010251
Physical Location & Seq
Forward (+)
38470137 .. 38471579
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G459500.1

Sequence Viewer

Length: 558 bp
ATGGCGTGCCTTGTGGCGCCACTTCGTTGCACCTCCTCCCACTCCCATCTCACGCTCTCTTTCTCAATCTCAAAACCTCCAATTGGTTTTGGGGCCAAACTCTCTTCCAACGCGGCCGTTCCCACGAGTCGACTCGTCCGAAACTCGATGAGTCAACCCGCCGCCGAAGCCAACTCGGACACCTCGAAATCCGAGACCCCCCCGGACGTCCTGGTTCAATACGTGGTGCTCCGCCGTGACCTAATCGACACGTGGCCGACGGGGAGCGTGGTCACACAGGGCTGCCATGCCTCTGTATCCGCCATTTGGTCCCACAAAGACGACCCTCACACCCTCCAGTACTGCAGCCCAGAAAATATCGACTCTATGCACAAGGTTACTCTTGAGGTGAAAGGAGAACCCCAGATATTGAACTTGTCCGAGAAGCTCACAGCTGGTGGCATAGCACACAAACTGTGGATTGAACAACCCGAAAACTACCCAACTTGTCTCGCCACAAAACCTTACCCCAAATCCGTGGTGTCGGCATATTTTAAAAAGTTGAAACTCTGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

186

Amino Acids

20.17

Weight (kDa)

8.72

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10700 AT5G10700
fragaria_vesca FvH4_2g36680
malus_domestica MD08G1127800.v1.1 MD15G1107200.v1.1
prunus_persica Prupe.1G459500_v2.0.a1
pyrus_communis pycom08g10680 pycom15g09800
rosa_chinensis RchiOBHm_Chr1g0366021 RchiOBHm_Chr6g0305051
rosa_laevigata RLG00000010923
rosa_multiflora Rmu_sc0017427.1_g000001
rosa_roxburghii Rroxscaffold_7G00163200
rosa_rugosa Rorug06G0337000
rosa_samantha Rh1AG334900 Rh6AG448600 Rh6BG452300 Rh6CG462300 Rh6DG449200
rosa_wichuraiana Rw1G029710 Rw6G039080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 130
AccII CGCG 1 cut(s) 113
AciI CCGC 5 cut(s) 113, 159, 162, 232, 300
AcoI YGGCCR 2 cut(s) 114, 254
AcvI CACGTG 1 cut(s) 252
AcyI GRCGYC 2 cut(s) 17, 207
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 83, 306
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 4 cut(s) 218, 412, 464, 544
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 427, 434
AluI AGCT 2 cut(s) 427, 434
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 188, 494
AoxI GGCC 3 cut(s) 93, 114, 254
ApeKI GCWGC 2 cut(s) 282, 345
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 93, 309
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 309
BanI GGYRCC 1 cut(s) 16
BauI CACGAG 1 cut(s) 124
BbrPI CACGTG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 269, 357
BccI CCATC 1 cut(s) 54
BceAI ACGGC 2 cut(s) 101, 219
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 188, 494
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 20
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 4 cut(s) 114, 162, 283, 346
BlsI GCNGC 4 cut(s) 115, 163, 284, 347
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 203, 212
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 93, 309
BmiI GGNNCC 3 cut(s) 18, 94, 311
BmrFI CCNGG 2 cut(s) 203, 212
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 203
BsaAI YACGTR 2 cut(s) 223, 252
BsaHI GRCGYC 2 cut(s) 17, 207
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 201, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 306
Bse1I ACTGG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 201, 516
BseLI CCNNNNNNNGG 2 cut(s) 83, 306
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 25
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 269, 357
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 95, 116, 256
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 83, 306
BsmAI GTCTC 2 cut(s) 188, 494
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 3 cut(s) 95, 116, 256
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 231
BspACI CCGC 5 cut(s) 113, 159, 162, 232, 300
BspANI GGCC 3 cut(s) 95, 116, 256
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 3 cut(s) 18, 94, 311
BspMAI CTGCAG 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 201, 516
BssNI GRCGYC 2 cut(s) 17, 207
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 2 cut(s) 17, 207
BstBAI YACGTR 2 cut(s) 223, 252
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstMAI GTCTC 2 cut(s) 188, 494
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 201, 210
BstSFI CTRYAG 1 cut(s) 343
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 269, 357
BstXI CCANNNNNNTGG 1 cut(s) 517
BstZI CGGCCG 1 cut(s) 114
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 3 cut(s) 95, 116, 256
BtgI CCRYGG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 93, 309
Csp6I GTAC 1 cut(s) 340
CviAII CATG 1 cut(s) 287
CviJI RGCY 8 cut(s) 95, 116, 170, 256, 282, 348, 427, 434
CviKI_1 RGCY 8 cut(s) 95, 116, 170, 256, 282, 348, 427, 434
CviQI GTAC 1 cut(s) 340
DinI GGCGCC 1 cut(s) 18
DraI TTTAAA 1 cut(s) 535
EaeI YGGCCR 2 cut(s) 114, 254
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 2 cut(s) 221, 289
EclXI CGGCCG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 309
Eco52I CGGCCG 1 cut(s) 114
Eco72I CACGTG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 288, 368, 443, 529
FaqI GGGAC 1 cut(s) 295
FatI CATG 1 cut(s) 286
FauI CCCGC 1 cut(s) 166
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 114, 162, 283, 346
Fsp4HI GCNGC 4 cut(s) 114, 162, 283, 346
GlaI GCGC 1 cut(s) 18
GluI GCNGC 4 cut(s) 114, 162, 283, 346
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 3 cut(s) 95, 116, 256
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 2 cut(s) 17, 207
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 2 cut(s) 131, 155
HindII GTYRAC 2 cut(s) 131, 155
HinfI GANTC 4 cut(s) 127, 132, 151, 362
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 131, 155
Hpy188I TCNGA 4 cut(s) 140, 178, 193, 421
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 2 cut(s) 131, 155
Hpy99I CGWCG 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 3 cut(s) 207, 222, 251
HpyCH4V TGCA 3 cut(s) 30, 345, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpySE526I ACGT 3 cut(s) 207, 222, 251
Hsp92I GRCGYC 2 cut(s) 17, 207
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 17
KasI GGCGCC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 234, 264
LpnPI CCDG 8 cut(s) 197, 216, 224, 263, 350, 363, 416, 420
Lsp1109I GCAGC 2 cut(s) 269, 357
MaeII ACGT 3 cut(s) 207, 222, 251
MaeIII GTNAC 3 cut(s) 236, 271, 376
MboII GAAGA 1 cut(s) 96
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 81
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 4 cut(s) 126, 136, 160, 356
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 8 cut(s) 43, 46, 87, 193, 301, 336, 344, 379
MseI TTAA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 203, 212
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 167
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 1 cut(s) 203
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 3 cut(s) 18, 94, 311
NmuCI GTSAC 2 cut(s) 236, 271
PcsI WCGNNNNNNNCGW 2 cut(s) 136, 182
PkrI GCNGC 4 cut(s) 115, 163, 284, 347
PleI GAGTC 4 cut(s) 126, 135, 159, 356
PluTI GGCGCC 1 cut(s) 20
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 4 cut(s) 126, 135, 159, 356
Ppu21I YACGTR 2 cut(s) 223, 252
Psp6I CCWGG 1 cut(s) 210
PspCI CACGTG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 18, 94, 311
PspPI GGNCC 2 cut(s) 93, 309
PstI CTGCAG 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SalI GTCGAC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 4 cut(s) 114, 162, 283, 346
Sau96I GGNCC 2 cut(s) 93, 309
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 4 cut(s) 126, 136, 160, 356
ScrFI CCNGG 2 cut(s) 203, 212
SduI GDGCHC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 343
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 1 cut(s) 81
SsiI CCGC 5 cut(s) 113, 159, 162, 232, 300
SspDI GGCGCC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 201, 210
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 3 cut(s) 210, 225, 254
TaqI TCGA 5 cut(s) 130, 146, 185, 246, 360
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 339
TauI GCSGC 2 cut(s) 116, 164
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 2 cut(s) 236, 271
TseI GCWGC 2 cut(s) 282, 345
Tsp45I GTSAC 2 cut(s) 236, 271
TspGWI ACGGA 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 130
ZraI GACGTC 1 cut(s) 208
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.