RLG00000010923

Peptidyl-tRNA hydrolase PTH2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010251
Physical Location & Seq
Forward (+)
5441731 .. 5442587
857 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010923

Sequence Viewer

Length: 408 bp
ATGTCTCAACCGGCCTCGGAAGCCAATCCGGACACCTCGAAACCCGAGACCCCCGACGTCCTCGTTCAGTACGTGGTGCTCCGGCGAGACCTAATCGACACGTGGCCGCTGGGCAGTGTGGTAACACAGGGCTGCCATGCCTCCGTCTCCGCCATCTGGTCCCACAAAGACGACCCACACACGCTCCAGTATTGTAGCCCTGAAAATATCGATTCTATGCATAAGGTCACTCTTGAGGTGAAGGGAGAACCTCAGATCTTGAACTTGTCTGATAAGCTCAAAGCTGGTGGCATAGAGCACAAACTGTGGATTGAGCAACCTGAGAATTTTCCAACTTGTCTCGCTACGAAACCTTACCCCAAATCCATGGTATCTTCGTATTTTAAAAAGTTGAAGCTCTGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

136

Amino Acids

15.13

Weight (kDa)

6.5

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 22 - 134 9.5e-25 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10700 AT5G10700
fragaria_vesca FvH4_2g36680
malus_domestica MD08G1127800.v1.1 MD15G1107200.v1.1
prunus_persica Prupe.1G459500_v2.0.a1
pyrus_communis pycom08g10680 pycom15g09800
rosa_chinensis RchiOBHm_Chr1g0366021 RchiOBHm_Chr6g0305051
rosa_laevigata RLG00000010923
rosa_multiflora Rmu_sc0017427.1_g000001
rosa_roxburghii Rroxscaffold_7G00163200
rosa_rugosa Rorug06G0337000
rosa_samantha Rh1AG334900 Rh6AG448600 Rh6BG452300 Rh6CG462300 Rh6DG449200
rosa_wichuraiana Rw1G029710 Rw6G039080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 2 cut(s) 107, 150
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 1 cut(s) 325
AcvI CACGTG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 2 cut(s) 262, 394
AluBI AGCT 3 cut(s) 277, 284, 397
AluI AGCT 3 cut(s) 277, 284, 397
Alw21I GWGCWC 2 cut(s) 81, 300
Alw26I GTCTC 5 cut(s) 9, 41, 81, 151, 344
Ama87I CYCGRG 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 2 cut(s) 12, 104
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 159
BbrPI CACGTG 1 cut(s) 102
Bbv12I GWGCWC 2 cut(s) 81, 300
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 5 cut(s) 9, 41, 81, 151, 344
BglII AGATCT 1 cut(s) 255
BisI GCNGC 2 cut(s) 107, 133
BlsI GCNGC 2 cut(s) 108, 134
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 210
BsaAI YACGTR 2 cut(s) 73, 102
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 2 cut(s) 41, 81
BsaJI CCNNGG 2 cut(s) 15, 366
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 15, 366
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 266, 312
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 109
BshFI GGCC 2 cut(s) 14, 106
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 81, 300
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 3 cut(s) 11, 29, 82
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 5 cut(s) 9, 41, 81, 151, 344
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 2 cut(s) 14, 106
Bso31I GGTCTC 2 cut(s) 41, 81
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 81, 300
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 2 cut(s) 107, 150
BspANI GGCC 2 cut(s) 14, 106
BspCNI CTCAG 2 cut(s) 265, 313
BspDI ATCGAT 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 161
BspTNI GGTCTC 2 cut(s) 41, 81
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 15, 366
BssMI GATC 1 cut(s) 255
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 306
BstACI GRCGYC 1 cut(s) 57
BstBAI YACGTR 2 cut(s) 73, 102
BstDEI CTNAG 2 cut(s) 252, 321
BstDSI CCRYGG 1 cut(s) 366
BstKTI GATC 1 cut(s) 258
BstMAI GTCTC 5 cut(s) 9, 41, 81, 151, 344
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 2 cut(s) 14, 106
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 1 cut(s) 70
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 2 cut(s) 137, 367
CviJI RGCY 8 cut(s) 14, 23, 106, 132, 198, 277, 284, 397
CviKI_1 RGCY 8 cut(s) 14, 23, 106, 132, 198, 277, 284, 397
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 252, 321
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
DraI TTTAAA 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 104
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 2 cut(s) 41, 81
Eco47I GGWCC 1 cut(s) 159
Eco72I CACGTG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 140, 370
FaiI YATR 5 cut(s) 138, 218, 222, 293, 368
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 136, 366
Fnu4HI GCNGC 2 cut(s) 107, 133
Fsp4HI GCNGC 2 cut(s) 107, 133
GluI GCNGC 2 cut(s) 107, 133
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 14, 106
HapII CCGG 3 cut(s) 11, 29, 82
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 140, 370
HinfI GANTC 1 cut(s) 212
HpaII CCGG 3 cut(s) 11, 29, 82
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 19, 255, 271
Hpy188III TCNNGA 3 cut(s) 29, 233, 259
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 3 cut(s) 57, 72, 101
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 252, 321
HpySE526I ACGT 3 cut(s) 57, 72, 101
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 140, 370
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 84, 189
Lsp1109I GCAGC 1 cut(s) 119
MaeII ACGT 3 cut(s) 57, 72, 101
MaeIII GTNAC 2 cut(s) 121, 226
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 366
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 2 cut(s) 81, 300
MluCI AATT 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 6 cut(s) 25, 46, 71, 151, 229, 261
Mph1103I ATGCAT 1 cut(s) 222
MroI TCCGGA 1 cut(s) 28
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 3 cut(s) 11, 29, 82
MwoI GCNNNNNNNGC 1 cut(s) 20
NcoI CCATGG 1 cut(s) 366
NdeII GATC 1 cut(s) 255
NlaIII CATG 2 cut(s) 140, 370
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 108, 134
PmaCI CACGTG 1 cut(s) 102
PmlI CACGTG 1 cut(s) 102
Ppu21I YACGTR 2 cut(s) 73, 102
PspCI CACGTG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 107, 133
Sau3AI GATC 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 159
SduI GDGCHC 2 cut(s) 81, 300
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 325
SsiI CCGC 2 cut(s) 107, 150
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 3 cut(s) 60, 75, 104
TaqI TCGA 3 cut(s) 38, 96, 210
TasI AATT 1 cut(s) 325
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 325
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.