Prupe.1G484500_v2.0.a1

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012579
Physical Location & Seq
Forward (+)
40364484 .. 40365554
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G484500.1

Sequence Viewer

Length: 642 bp
ATGGCTGGTACCCATCGTGACTGTATTCTCTCCATAATACAATTTCTCGAGGGAGCTAATTTACATGAATCTGCACGCAAGGTGGAGAGGGAATCAGGATTGTTCTTTAACCTGAACTACTTTGAGGACTGCTTCATCCGGGGAGCATTTCAGAAAGCGGAGGAGTATGTGAGCAGTTTCACAACCGTGCACGACAACCACTGCTCAACTCGTATCATCCACGAGATCCGGTGGCACAAGTTCTTGGAGGCCATGGATAATAAGCGATACGATGATGCAAAGTCCATTCTCGAAGAGTTCAAGGATTTCGAGCGGTATAATCCTAATATAATCGCTCAGATGACTGAGCTATTTGACCTTGAAAAATTCAGGTCATTCGAAGGGCTGCCTGGAGACCCAGAACTAGAGAGAAGGGCAGCATGGGAACATATTAAGAAATACTTGAAGGCCAATCAGCGGTTAGCTGGGAAGCTTCGGTACCAGGTGGGGTCCCCCAATTTTCGTGGTTTTCTACCAGTGATTCCACCAACTCAAGCAGCTCAGTCATCAGCATCAGCTGGATCAGGGCCGCAGGGAAATGGGAATTTGAGGATGATTAATGGGAATCTTCCCTGCTGCTGTCCAAGGAATAGGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

214

Amino Acids

24.52

Weight (kDa)

8.21

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 8, 477
AccB1I GGYRCC 2 cut(s) 8, 477
AccBSI CCGCTC 1 cut(s) 313
AciI CCGC 4 cut(s) 158, 313, 457, 569
AclWI GGATC 2 cut(s) 220, 568
AcsI RAATTY 2 cut(s) 365, 583
AfaI GTAC 2 cut(s) 10, 479
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 3 cut(s) 301, 362, 445
AjnI CCWGG 2 cut(s) 388, 480
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 6 cut(s) 56, 349, 464, 472, 539, 557
AluI AGCT 6 cut(s) 56, 349, 464, 472, 539, 557
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 387
Alw44I GTGCAC 1 cut(s) 188
AlwI GGATC 2 cut(s) 220, 568
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 3 cut(s) 249, 447, 566
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 4 cut(s) 385, 416, 536, 615
ApoI RAATTY 2 cut(s) 365, 583
AseI ATTAAT 1 cut(s) 597
Asp718I GGTACC 2 cut(s) 8, 477
AspS9I GGNCC 2 cut(s) 489, 566
AsuC2I CCSGG 1 cut(s) 140
AsuII TTCGAA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 2 cut(s) 8, 477
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 372, 428, 548, 602
BccI CCATC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 390, 482
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 404
BisI GCNGC 5 cut(s) 386, 417, 537, 569, 616
BlsI GCNGC 5 cut(s) 387, 418, 538, 570, 617
Bme1390I CCNGG 3 cut(s) 140, 390, 482
Bme18I GGWCC 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 489, 566
BmiI GGNNCC 4 cut(s) 10, 479, 490, 491
BmrFI CCNGG 3 cut(s) 140, 390, 482
BmsI GCATC 2 cut(s) 265, 560
BpmI CTGGAG 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 139, 252, 623
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 515
BseBI CCWGG 2 cut(s) 390, 482
BseDI CCNNGG 3 cut(s) 139, 252, 623
BseGI GGATG 3 cut(s) 135, 216, 597
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMII CTCAG 3 cut(s) 336, 350, 554
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 4 cut(s) 372, 428, 548, 602
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 3 cut(s) 251, 449, 568
BshNI GGYRCC 2 cut(s) 8, 477
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 139, 229
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 3 cut(s) 251, 449, 568
Bso31I GGTCTC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 225, 560
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 4 cut(s) 158, 313, 457, 569
BspANI GGCC 3 cut(s) 251, 449, 568
BspCNI CTCAG 3 cut(s) 337, 349, 553
BspLI GGNNCC 4 cut(s) 10, 479, 490, 491
BspPI GGATC 2 cut(s) 220, 568
BspT104I TTCGAA 1 cut(s) 378
BspT107I GGYRCC 2 cut(s) 8, 477
BspTNI GGTCTC 1 cut(s) 387
BsrBI CCGCTC 1 cut(s) 313
BsrI ACTGG 1 cut(s) 515
BssECI CCNNGG 3 cut(s) 139, 252, 623
BssMI GATC 2 cut(s) 225, 560
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 252, 623
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 390, 482
Bst4CI ACNGT 2 cut(s) 23, 187
Bst6I CTCTTC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 336, 345, 540
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 135, 216, 597
BstKTI GATC 2 cut(s) 228, 563
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 225, 560
BstNI CCWGG 2 cut(s) 390, 482
BstSCI CCNGG 3 cut(s) 138, 388, 480
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 372, 428, 548, 602
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 3 cut(s) 251, 449, 568
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 135, 216, 597
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 199, 522
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 489, 566
CsiI ACCWGGT 1 cut(s) 480
Csp6I GTAC 2 cut(s) 9, 478
CspCI CAANNNNNGTGG 2 cut(s) 484, 519
CviAII CATG 3 cut(s) 65, 253, 420
CviQI GTAC 2 cut(s) 9, 478
DdeI CTNAG 3 cut(s) 336, 345, 540
DpnI GATC 2 cut(s) 227, 562
DpnII GATC 2 cut(s) 225, 560
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 252, 623
Eco31I GGTCTC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 489
EcoRII CCWGG 2 cut(s) 388, 480
EcoT14I CCWWGG 2 cut(s) 252, 623
ErhI CCWWGG 2 cut(s) 252, 623
FaeI CATG 3 cut(s) 68, 256, 423
FaiI YATR 8 cut(s) 35, 66, 168, 254, 318, 329, 421, 429
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 64, 252, 419
Fnu4HI GCNGC 5 cut(s) 386, 417, 537, 569, 616
FokI GGATG 3 cut(s) 122, 203, 604
Fsp4HI GCNGC 5 cut(s) 386, 417, 537, 569, 616
FspBI CTAG 1 cut(s) 404
GluI GCNGC 5 cut(s) 386, 417, 537, 569, 616
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 3 cut(s) 251, 449, 568
HapII CCGG 2 cut(s) 139, 229
Hin1II CATG 3 cut(s) 68, 256, 423
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 4 cut(s) 68, 92, 520, 604
HpaII CCGG 2 cut(s) 139, 229
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 153, 339
Hpy188III TCNNGA 4 cut(s) 17, 47, 96, 290
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 374, 405, 439
HpyCH4III ACNGT 2 cut(s) 23, 187
HpyCH4V TGCA 3 cut(s) 74, 190, 278
HpyF3I CTNAG 3 cut(s) 336, 345, 540
Hsp92II CATG 3 cut(s) 68, 256, 423
KflI GGGWCCC 1 cut(s) 489
KpnI GGTACC 2 cut(s) 12, 481
Kzo9I GATC 2 cut(s) 225, 560
LmnI GCTCC 2 cut(s) 53, 143
Lsp1109I GCAGC 4 cut(s) 372, 428, 548, 602
LweI GCATC 2 cut(s) 265, 560
MabI ACCWGGT 1 cut(s) 480
MaeI CTAG 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 227, 562
MbiI CCGCTC 1 cut(s) 313
MboI GATC 2 cut(s) 225, 560
MboII GAAGA 2 cut(s) 305, 599
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 5 cut(s) 41, 58, 365, 496, 583
MnlI CCTC 7 cut(s) 43, 81, 118, 154, 241, 582, 627
MseI TTAA 3 cut(s) 108, 432, 597
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 2 cut(s) 457, 557
MspI CCGG 2 cut(s) 139, 229
MspR9I CCNGG 3 cut(s) 140, 390, 482
MvaI CCWGG 2 cut(s) 390, 482
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 225, 560
NlaIII CATG 3 cut(s) 68, 256, 423
NlaIV GGNNCC 4 cut(s) 10, 479, 490, 491
NmuCI GTSAC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 47
PfeI GAWTC 4 cut(s) 68, 92, 520, 604
PkrI GCNGC 5 cut(s) 387, 418, 538, 570, 617
PpuMI RGGWCCY 1 cut(s) 489
PshBI ATTAAT 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 388, 480
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 2 cut(s) 388, 480
PspN4I GGNNCC 4 cut(s) 10, 479, 490, 491
PspPI GGNCC 2 cut(s) 489, 566
PspPPI RGGWCCY 1 cut(s) 489
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 10, 479
RsaNI GTAC 2 cut(s) 9, 478
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 3 cut(s) 108, 432, 597
SatI GCNGC 5 cut(s) 386, 417, 537, 569, 616
Sau3AI GATC 2 cut(s) 225, 560
Sau96I GGNCC 2 cut(s) 489, 566
ScrFI CCNGG 3 cut(s) 140, 390, 482
SduI GDGCHC 1 cut(s) 192
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 2 cut(s) 265, 560
Sfr274I CTCGAG 1 cut(s) 47
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 47, 531
SmoI CTYRAG 2 cut(s) 47, 531
Sse9I AATT 5 cut(s) 41, 58, 365, 496, 583
SsiI CCGC 4 cut(s) 158, 313, 457, 569
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 3 cut(s) 138, 388, 480
StyI CCWWGG 2 cut(s) 252, 623
TaaI ACNGT 2 cut(s) 23, 187
TaqI TCGA 4 cut(s) 48, 291, 309, 378
TasI AATT 5 cut(s) 41, 58, 365, 496, 583
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 4 cut(s) 68, 92, 520, 604
Tru1I TTAA 3 cut(s) 108, 432, 597
Tru9I TTAA 3 cut(s) 108, 432, 597
TscAI CASTG 2 cut(s) 206, 522
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 4 cut(s) 385, 416, 536, 615
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 81, 124
TspRI CASTG 2 cut(s) 206, 522
VneI GTGCAC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 489
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 2 cut(s) 365, 583
XhoI CTCGAG 1 cut(s) 47
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.