Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004989.1

Orthogroup ID

OG0012579

Physical Location & Seq

Genomic Coordinates Reverse (-)

45691 .. 46653

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004989.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggctgtttccaacatacagagagatgcgattgactctattgttcaatatctcgatagaatcaacctgaggcaatccgcaagaatgtacgcggactgttttgttcgtggagcctttgaagccgctgaggactacatgatgggcttcaccggagtccatgacaacatattttcaataaatgttgtttttgagctccgaaatcatcgtgaggaggcgcgagtcatcatccgcgaaaaacttcaaccattggggatctacaaccaagagttggttggcttcgctacttatctagtgaatatgcataacttcaggatgcatgaagcttttttttactacggggatccagagtaccacaggagggagagggtagagttcattagggtgaacttggagtccaatcctctattgtttgggaaaattcggtatcccattcccaacgtgaataatgcagtcatcgtaccacctcaagttccaacagctctagcagttcctgccacttcactaattccaattccagcacctcgagcagctccccggccattagcgttaccgggaccgaggaattttagtgttactccgaggtggtttcctagaactcggaggacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 ko04140 map04137 map04140

Pfam Domains

Protein Families

WD40

Protein Analysis

202

Amino Acids

23.34

Weight (kDa)

9.6

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28620 FvH4_2g28630
prunus_persica	Prupe.1G484500_v2.0.a1
pyrus_communis	pycom08g13020 pycom15g11630
rosa_laevigata	RLG00000011602
rosa_multiflora	Rmu_sc0004989.1_g000004 Rmu_sc0004989.1_g000008
rosa_roxburghii	Rroxscaffold_7G00170540 Rroxscaffold_7G00170550
rosa_rugosa	Rorug06G0271700
rosa_samantha	Rh6AG383000 Rh6BG391300 Rh6BG391400 Rh6CG396300 Rh6CG396400 Rh6DG383600 Rh6DG383800
rosa_wichuraiana	Rw6G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccII	CGCG	3 cut(s)	92, 217, 231
AciI	CCGC	4 cut(s)	78, 92, 123, 229
AclWI	GGATC	3 cut(s)	260, 335, 348
AcoI	YGGCCR	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	417, 562
AcuI	CTGAAG	1 cut(s)	292
AfaI	GTAC	3 cut(s)	89, 350, 459
AfiI	CCNNNNNNNGG	2 cut(s)	268, 358
AgsI	TTSAA	4 cut(s)	47, 119, 174, 242
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	4 cut(s)	193, 323, 479, 530
AluI	AGCT	4 cut(s)	193, 323, 479, 530
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	3 cut(s)	260, 335, 348
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	417, 562
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	554, 603
AsuC2I	CCSGG	2 cut(s)	535, 552
AsuHPI	GGTGA	2 cut(s)	139, 394
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	2 cut(s)	554, 603
AxyI	CCTNAGG	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	435
BcnI	CCSGG	2 cut(s)	535, 552
BfaI	CTAG	3 cut(s)	290, 482, 591
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	2 cut(s)	123, 528
BlsI	GCNGC	2 cut(s)	124, 529
Bme1390I	CCNGG	2 cut(s)	535, 552
Bme18I	GGWCC	2 cut(s)	554, 603
BmeT110I	CYCGRG	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	554, 603
BmiI	GGNNCC	3 cut(s)	112, 342, 555
BmrFI	CCNGG	2 cut(s)	535, 552
BmsI	GCATC	2 cut(s)	16, 303
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	450
BpuMI	CCSGG	2 cut(s)	535, 552
BsaJI	CCNNGG	3 cut(s)	533, 557, 578
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 358
Bse21I	CCTNAGG	1 cut(s)	68
BseDI	CCNNGG	3 cut(s)	533, 557, 578
BseGI	GGATG	2 cut(s)	225, 318
BseLI	CCNNNNNNNGG	2 cut(s)	268, 358
BseMII	CTCAG	2 cut(s)	59, 117
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	539
Bsh1236I	CGCG	3 cut(s)	92, 217, 231
BshFI	GGCC	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	3 cut(s)	150, 535, 551
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	268, 358
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	252, 340
BspACI	CCGC	4 cut(s)	78, 92, 123, 229
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	2 cut(s)	60, 118
BspFNI	CGCG	3 cut(s)	92, 217, 231
BspLI	GGNNCC	3 cut(s)	112, 342, 555
BspPI	GGATC	3 cut(s)	260, 335, 348
BssECI	CCNNGG	3 cut(s)	533, 557, 578
BssMI	GATC	2 cut(s)	252, 340
Bst4CI	ACNGT	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	68, 126
BstF5I	GGATG	2 cut(s)	225, 318
BstFNI	CGCG	3 cut(s)	92, 217, 231
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	255, 343
BstMBI	GATC	2 cut(s)	252, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 491, 524
BstSCI	CCNGG	2 cut(s)	533, 550
BstUI	CGCG	3 cut(s)	92, 217, 231
BstV1I	GCAGC	1 cut(s)	539
BstX2I	RGATCY	2 cut(s)	252, 340
BstYI	RGATCY	2 cut(s)	252, 340
Bsu36I	CCTNAGG	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	225, 318
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	554, 603
Csp6I	GTAC	3 cut(s)	88, 349, 458
CviAII	CATG	3 cut(s)	136, 158, 317
CviQI	GTAC	3 cut(s)	88, 349, 458
DdeI	CTNAG	2 cut(s)	68, 126
DpnI	GATC	2 cut(s)	254, 342
DpnII	GATC	2 cut(s)	252, 340
EaeI	YGGCCR	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	554, 603
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	603
EcoT22I	ATGCAT	2 cut(s)	303, 318
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	3 cut(s)	139, 161, 320
FaiI	YATR	7 cut(s)	17, 137, 159, 167, 299, 303, 318
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	3 cut(s)	135, 157, 316
Fnu4HI	GCNGC	2 cut(s)	123, 528
FokI	GGATG	2 cut(s)	212, 325
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	123, 528
FspBI	CTAG	3 cut(s)	290, 482, 591
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	123, 528
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	3 cut(s)	150, 535, 551
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	139, 161, 320
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	5 cut(s)	35, 60, 153, 219, 392
HpaII	CCGG	3 cut(s)	150, 535, 551
HphI	GGTGA	2 cut(s)	139, 394
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	197, 579, 600
Hpy188III	TCNNGA	4 cut(s)	53, 206, 310, 344
Hpy8I	GTNNAC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	3 cut(s)	301, 316, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 491, 524
HpyF3I	CTNAG	2 cut(s)	68, 126
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	139, 161, 320
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	252, 340
LmnI	GCTCC	3 cut(s)	110, 198, 535
LpnPI	CCDG	9 cut(s)	80, 163, 295, 340, 357, 504, 528, 548, 564
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	2 cut(s)	16, 303
MaeI	CTAG	3 cut(s)	290, 482, 591
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	546, 571
MalI	GATC	2 cut(s)	254, 342
MboI	GATC	2 cut(s)	252, 340
MflI	RGATCY	2 cut(s)	252, 340
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	417, 504, 510, 562
MlyI	GAGTC	4 cut(s)	29, 162, 228, 401
MmeI	TCCRAC	2 cut(s)	36, 497
Mph1103I	ATGCAT	2 cut(s)	303, 318
MroXI	GAANNNNTTC	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	3 cut(s)	150, 535, 551
MspR9I	CCNGG	2 cut(s)	535, 552
MvnI	CGCG	3 cut(s)	92, 217, 231
MwoI	GCNNNNNNNGC	3 cut(s)	119, 491, 524
NciI	CCSGG	2 cut(s)	535, 552
NdeII	GATC	2 cut(s)	252, 340
NlaIII	CATG	3 cut(s)	139, 161, 320
NlaIV	GGNNCC	3 cut(s)	112, 342, 555
NsiI	ATGCAT	2 cut(s)	303, 318
PaeR7I	CTCGAG	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	124, 529
PleI	GAGTC	4 cut(s)	29, 161, 227, 400
PpsI	GAGTC	4 cut(s)	29, 161, 227, 400
PpuMI	RGGWCCY	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	112, 342, 555
PspPI	GGNCC	2 cut(s)	554, 603
PspPPI	RGGWCCY	1 cut(s)	603
PspXI	VCTCGAGB	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	252, 340
RsaI	GTAC	3 cut(s)	89, 350, 459
RsaNI	GTAC	3 cut(s)	88, 349, 458
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	123, 528
Sau3AI	GATC	2 cut(s)	252, 340
Sau96I	GGNCC	2 cut(s)	554, 603
SchI	GAGTC	4 cut(s)	29, 162, 228, 401
ScrFI	CCNGG	2 cut(s)	535, 552
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	16, 303
Sfr274I	CTCGAG	1 cut(s)	522
SinI	GGWCC	2 cut(s)	554, 603
SlaI	CTCGAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	465, 522
SmoI	CTYRAG	2 cut(s)	465, 522
Sse9I	AATT	4 cut(s)	417, 504, 510, 562
SsiI	CCGC	4 cut(s)	78, 92, 123, 229
SspMI	CTAG	3 cut(s)	290, 482, 591
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	533, 550
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	54, 523
TaqII	GACCGA	1 cut(s)	571
TasI	AATT	4 cut(s)	417, 504, 510, 562
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	2 cut(s)	333, 364
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	554, 603
XapI	RAATTY	2 cut(s)	417, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XhoI	CTCGAG	1 cut(s)	522
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	3 cut(s)	290, 482, 591
Zsp2I	ATGCAT	2 cut(s)	303, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.