Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012579

Physical Location & Seq

Genomic Coordinates Reverse (-)

57665186 .. 57677566

Gene Structure 12381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG383600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTGCCTTGTCAGTCTTGTTGGAGGGCACAACTAAAAGGTCTCAGGAATCAGTATCTGTTCCTGAACTTCCAAAGGCTCCAAAAGTGGCAAGCGGTCCAAAGGTATCGGAGTTAAAAGCCAAGGTAGAAGCTGAGCAGCATGCTCTTCGCCGATTGCGGATGTGCCTCAGAGATGTTTGCAATAGAATTCTATACGATAAGAGGTTTAGTGGTTTTCACTATCCTGTCTTGGATGAGGATGCTCCAAACTATCGCTCAATTATCCAAAATCCTATGGATGTTGCAACTCTGCTGCAGCGTGTTGACTCTGGGCTGTATATTACATGTTTAGCATTCCTGCAAGATGTTGATCTTATAGTTTCTAATGCAAAGAGGCTGGAAAAAGAAACGGGCTATTTCTTCAACCTGGCTTATTTTGAACACTGCTTTGTGCGGGGATATTTCGAAGAGGCTGAGAACTACCTCGCTGGCTTTCTTCCAATTATCCCTGGTAATGTCTACTCCGTCAATGTTTACTTCGAGTTAAACTGGCAGAAGTTTCTAGCGGTGCTTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

187

Amino Acids

21.38

Weight (kDa)

5.7

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	64 - 130	1.8e-11	Bromodomain
TPR1-like_2nd	PF21889	136 - 186	1.1e-08	TPR1-like, CTLH-containing domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28620 FvH4_2g28630
prunus_persica	Prupe.1G484500_v2.0.a1
pyrus_communis	pycom08g13020 pycom15g11630
rosa_laevigata	RLG00000011602
rosa_multiflora	Rmu_sc0004989.1_g000004 Rmu_sc0004989.1_g000008
rosa_roxburghii	Rroxscaffold_7G00170540 Rroxscaffold_7G00170550
rosa_rugosa	Rorug06G0271700
rosa_samantha	Rh6AG383000 Rh6BG391300 Rh6BG391400 Rh6CG396300 Rh6CG396400 Rh6DG383600 Rh6DG383800
rosa_wichuraiana	Rw6G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	4 cut(s)	96, 160, 436, 548
AcsI	RAATTY	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	406, 422
AjnI	CCWGG	2 cut(s)	408, 490
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	59
ApeKI	GCWGC	4 cut(s)	5, 139, 295, 298
ApoI	RAATTY	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	98
AsuII	TTCGAA	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	151, 282, 310
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	410, 492
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	4 cut(s)	6, 140, 296, 299
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	4 cut(s)	7, 141, 297, 300
Bme1390I	CCNGG	2 cut(s)	410, 492
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	410, 492
BmsI	GCATC	1 cut(s)	232
Bpu1102I	GCTNAGC	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	123, 490
Bse1I	ACTGG	1 cut(s)	536
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	410, 492
BseDI	CCNNGG	2 cut(s)	123, 490
BseGI	GGATG	4 cut(s)	168, 241, 247, 286
BseJI	GATNNNNATC	1 cut(s)	351
BseMII	CTCAG	4 cut(s)	59, 126, 184, 447
BseNI	ACTGG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	151, 282, 310
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	352
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	4 cut(s)	96, 160, 436, 548
BspCNI	CTCAG	4 cut(s)	58, 127, 183, 448
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	153
BspT104I	TTCGAA	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	123, 490
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	410, 492
Bst6I	CTCTTC	2 cut(s)	153, 444
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	3 cut(s)	94, 144, 472
BstDEI	CTNAG	4 cut(s)	45, 135, 170, 456
BstF5I	GGATG	4 cut(s)	168, 241, 247, 286
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	352
BstNI	CCWGG	2 cut(s)	410, 492
BstNSI	RCATGY	2 cut(s)	146, 330
BstSCI	CCNGG	2 cut(s)	408, 490
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	151, 282, 310
BtsCI	GGATG	4 cut(s)	168, 241, 247, 286
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	94, 144, 472
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	98
CviAII	CATG	2 cut(s)	143, 327
DdeI	CTNAG	4 cut(s)	45, 135, 170, 456
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	153, 444
EarI	CTCTTC	2 cut(s)	153, 444
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	408, 490
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	146, 330
FaiI	YATR	6 cut(s)	144, 196, 278, 321, 328, 359
FatI	CATG	2 cut(s)	142, 326
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	6, 140, 296, 299
FokI	GGATG	4 cut(s)	175, 248, 254, 293
Fsp4HI	GCNGC	4 cut(s)	6, 140, 296, 299
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	4 cut(s)	6, 140, 296, 299
Hin1II	CATG	2 cut(s)	146, 330
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	50, 308
Hpy166II	GTNNAC	3 cut(s)	307, 502, 517
Hpy188I	TCNGA	2 cut(s)	112, 173
Hpy188III	TCNNGA	2 cut(s)	47, 65
Hpy8I	GTNNAC	3 cut(s)	307, 502, 517
HpyCH4V	TGCA	5 cut(s)	183, 287, 298, 343, 371
HpyF3I	CTNAG	4 cut(s)	45, 135, 170, 456
Hsp92II	CATG	2 cut(s)	146, 330
Kzo9I	GATC	1 cut(s)	352
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	85, 250
Lsp1109I	GCAGC	3 cut(s)	151, 282, 310
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	545
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	4 cut(s)	140, 394, 461, 470
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	3 cut(s)	189, 261, 483
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	7 cut(s)	19, 179, 198, 232, 369, 445, 476
MseI	TTAA	2 cut(s)	116, 527
MspR9I	CCNGG	2 cut(s)	410, 492
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	410, 492
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	146, 330
NlaIV	GGNNCC	1 cut(s)	81
NspI	RCATGY	2 cut(s)	146, 330
NspV	TTCGAA	1 cut(s)	447
PaeI	GCATGC	1 cut(s)	146
PciI	ACATGT	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	153
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	7, 141, 297, 300
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PscI	ACATGT	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	408, 490
PspGI	CCWGG	2 cut(s)	408, 490
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	116, 527
SatI	GCNGC	4 cut(s)	6, 140, 296, 299
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	410, 492
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	7 cut(s)	44, 108, 129, 136, 209, 411, 468
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	447
SinI	GGWCC	1 cut(s)	98
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	3 cut(s)	189, 261, 483
SsiI	CCGC	4 cut(s)	96, 160, 436, 548
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	2 cut(s)	408, 490
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	2 cut(s)	447, 522
TasI	AATT	3 cut(s)	189, 261, 483
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	116, 527
Tru9I	TTAA	2 cut(s)	116, 527
TscAI	CASTG	1 cut(s)	431
TseI	GCWGC	4 cut(s)	5, 139, 295, 298
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	2 cut(s)	146, 330
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.