Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004989.1

Orthogroup ID

OG0012579

Physical Location & Seq

Genomic Coordinates Reverse (-)

26120 .. 27165

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004989.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggctgatgacgacgctcacaaacgtcaggtttttgttgtgattgaatttcttgacgcaactcattgtcatgaaactgctcgcacgctggaaaaagaaacgcgctatttcttcaacctggcttattttgaacaccgctttgtgcggggatatatatttcgaagaggctgcggatcggactacctcgctggctttcttccaagtatccacgataatgtctactccgtcaatgttaacttcgagttaaacaggcagaagtttctggcggtgcttgatgaaccctttgagcgataccaccccaatctggttgtttctgcaagcgagttagcgagtttgaatgattttcggactcatgaagcgtttgcggattatgggattcctgaagaggagagaatggagaggctggggttcgtgagaaccaatttggaggtgaatcctcttctcgtcggaaagattcaatatcccccaccaacacctcctcaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 ko04140 map04137 map04140

Pfam Domains

Protein Families

WD40

Protein Analysis

162

Amino Acids

18.87

Weight (kDa)

5.46

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28620 FvH4_2g28630
prunus_persica	Prupe.1G484500_v2.0.a1
pyrus_communis	pycom08g13020 pycom15g11630
rosa_laevigata	RLG00000011602
rosa_multiflora	Rmu_sc0004989.1_g000004 Rmu_sc0004989.1_g000008
rosa_roxburghii	Rroxscaffold_7G00170540 Rroxscaffold_7G00170550
rosa_rugosa	Rorug06G0271700
rosa_samantha	Rh6AG383000 Rh6BG391300 Rh6BG391400 Rh6CG396300 Rh6CG396400 Rh6DG383600 Rh6DG383800
rosa_wichuraiana	Rw6G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	103
AciI	CCGC	5 cut(s)	136, 145, 171, 266, 365
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	5 cut(s)	47, 115, 131, 337, 458
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	485
AluI	AGCT	1 cut(s)	485
AlwI	GGATC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	442
AsuII	TTCGAA	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	401, 468
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	5 cut(s)	136, 145, 171, 266, 365
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	2 cut(s)	70, 352
BspPI	GGATC	1 cut(s)	181
BspT104I	TTCGAA	1 cut(s)	160
BssMI	GATC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	119
Bst6I	CTCTTC	3 cut(s)	157, 378, 444
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	4 cut(s)	82, 86, 190, 319
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	215
Cac8I	GCNNGC	4 cut(s)	82, 86, 190, 319
CciI	TCATGA	2 cut(s)	70, 352
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	2 cut(s)	23, 65
CviAII	CATG	2 cut(s)	71, 353
CviJI	RGCY	6 cut(s)	5, 122, 168, 192, 403, 485
CviKI_1	RGCY	6 cut(s)	5, 122, 168, 192, 403, 485
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	3 cut(s)	157, 378, 444
EarI	CTCTTC	3 cut(s)	157, 378, 444
Eco57I	CTGAAG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	74, 356
FaiI	YATR	5 cut(s)	72, 153, 155, 354, 372
FatI	CATG	2 cut(s)	70, 352
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	169
GsaI	CCCAGC	1 cut(s)	407
HgaI	GACGC	2 cut(s)	23, 65
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	74, 356
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	4 cut(s)	349, 376, 433, 454
HpaI	GTTAAC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	220, 235
Hpy188I	TCNGA	3 cut(s)	178, 348, 449
Hpy188III	TCNNGA	5 cut(s)	53, 71, 353, 380, 412
Hpy8I	GTNNAC	2 cut(s)	220, 235
Hpy99I	CGWCG	2 cut(s)	17, 449
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	74, 356
HspAI	GCGC	1 cut(s)	103
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	155
MaeII	ACGT	1 cut(s)	25
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	5 cut(s)	103, 174, 188, 395, 431
MluCI	AATT	2 cut(s)	47, 421
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	8 cut(s)	158, 194, 379, 393, 421, 447, 486, 489
MseI	TTAA	2 cut(s)	234, 245
MslI	CAYNNNNRTG	2 cut(s)	69, 213
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	103
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	74, 356
NspV	TTCGAA	1 cut(s)	160
PagI	TCATGA	2 cut(s)	70, 352
PfeI	GAWTC	3 cut(s)	376, 433, 454
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	117
RseI	CAYNNNNRTG	2 cut(s)	69, 213
SaqAI	TTAA	2 cut(s)	234, 245
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	7 cut(s)	28, 33, 120, 186, 432, 478, 487
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	69, 213
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
Sse9I	AATT	2 cut(s)	47, 421
SsiI	CCGC	5 cut(s)	136, 145, 171, 266, 365
StyD4I	CCNGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	160, 240
TasI	AATT	2 cut(s)	47, 421
TfiI	GAWTC	3 cut(s)	376, 433, 454
Tru1I	TTAA	2 cut(s)	234, 245
Tru9I	TTAA	2 cut(s)	234, 245
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	3 cut(s)	87, 291, 369
TspGWI	ACGGA	1 cut(s)	214
XapI	RAATTY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.