Rroxscaffold_7G00170550

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012579
Physical Location & Seq
Forward (+)
10986775 .. 10987498
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170550.1

Sequence Viewer

Length: 366 bp
ATGGCTGATGACGCTCACAAACGTCAGGTTTTTGCTGTGATTGAATTTCTTGACGCAACTCATTGTCATGAAACTGCTCGCACGTACGCTCGAAAAAGAAACGGGCTATTTCTTCAACCTCTGGCTTATTTTGAACACTGCTTTGTGCGGGGATATTTCGAAGAGGCTGAGGACTACCTCGCTGGCTTTCTTCCAAGTATCCACGGTAATGTCTACTCCGTCAATGTTTACTTCGAGTTAAACTGGCAGAAGTTTCTGGCGGTGCCTGATGAGAACGACCATACTGAGGCGCAAATAATCATTGACGAAGATCTCAGACCCTTTGAGCGGTACCACCCCAATCTGGTTGTTTCTGCGAGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

121

Amino Acids

14.17

Weight (kDa)

5.02

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 41 - 114 1.7e-13 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 2 cut(s) 262, 330
AccBSI CCGCTC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 213
AciI CCGC 3 cut(s) 148, 260, 328
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 2 cut(s) 86, 332
AfiI CCNNNNNNNGG 3 cut(s) 286, 327, 343
AgsI TTSAA 3 cut(s) 44, 116, 134
ApoI RAATTY 1 cut(s) 44
Asp718I GGTACC 1 cut(s) 330
AspLEI GCGC 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 159
BanI GGYRCC 2 cut(s) 262, 330
BbvCI CCTCAGC 1 cut(s) 168
BciVI GTATCC 1 cut(s) 209
BfuI GTATCC 1 cut(s) 209
BglII AGATCT 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 264, 332
Bpu10I CCTNAGC 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 327, 343
Bse1I ACTGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 286, 327, 343
BseMII CTCAG 3 cut(s) 159, 276, 328
BseNI ACTGG 1 cut(s) 248
BshNI GGYRCC 2 cut(s) 262, 330
BsiWI CGTACG 1 cut(s) 84
BslI CCNNNNNNNGG 3 cut(s) 286, 327, 343
Bsp119I TTCGAA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 3 cut(s) 148, 260, 328
BspCNI CTCAG 3 cut(s) 160, 277, 327
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 264, 332
BspT104I TTCGAA 1 cut(s) 159
BspT107I GGYRCC 2 cut(s) 262, 330
BsrBI CCGCTC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 79, 184, 358
BstDEI CTNAG 3 cut(s) 168, 285, 314
BstDSI CCRYGG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 79, 184, 358
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 292
CseI GACGC 2 cut(s) 20, 62
Csp6I GTAC 2 cut(s) 85, 331
CviAII CATG 1 cut(s) 68
CviJI RGCY 5 cut(s) 5, 106, 125, 167, 186
CviKI_1 RGCY 5 cut(s) 5, 106, 125, 167, 186
CviQI GTAC 2 cut(s) 85, 331
DdeI CTNAG 3 cut(s) 168, 285, 314
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
FaeI CATG 1 cut(s) 71
FaiI YATR 2 cut(s) 69, 282
FatI CATG 1 cut(s) 67
FauI CCCGC 1 cut(s) 141
FblI GTMKAC 1 cut(s) 213
GlaI GCGC 1 cut(s) 291
HgaI GACGC 2 cut(s) 20, 62
HhaI GCGC 1 cut(s) 292
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 214, 229
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 50, 68
Hpy8I GTNNAC 2 cut(s) 214, 229
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 22, 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 168, 285, 314
HpySE526I ACGT 2 cut(s) 22, 83
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 290
KpnI GGTACC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 11, 107, 168, 229, 242, 279, 329
MaeII ACGT 2 cut(s) 22, 83
MalI GATC 1 cut(s) 312
MbiI CCGCTC 1 cut(s) 328
MboI GATC 1 cut(s) 310
MboII GAAGA 4 cut(s) 104, 173, 182, 320
MflI RGATCY 1 cut(s) 310
MluCI AATT 1 cut(s) 44
MnlI CCTC 5 cut(s) 129, 157, 163, 188, 280
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 2 cut(s) 66, 207
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 2 cut(s) 264, 332
NspV TTCGAA 1 cut(s) 159
PagI TCATGA 1 cut(s) 67
Pfl23II CGTACG 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 84
PspLI CGTACG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 264, 332
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 2 cut(s) 86, 332
RsaNI GTAC 2 cut(s) 85, 331
RseI CAYNNNNRTG 2 cut(s) 66, 207
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 1 cut(s) 310
SetI ASST 5 cut(s) 25, 30, 86, 121, 180
SfuI TTCGAA 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 66, 207
Sse9I AATT 1 cut(s) 44
SsiI CCGC 3 cut(s) 148, 260, 328
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 2 cut(s) 25, 86
TaqI TCGA 3 cut(s) 91, 159, 234
TasI AATT 1 cut(s) 44
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 143
XapI RAATTY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.