Rh6BG391400

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012579
Physical Location & Seq
Reverse (-)
61934916 .. 61935878
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG391400.1

Sequence Viewer

Length: 678 bp
ATGGCTGTTTCCAACACACAGAGAGATGCGATTGACTCTATTGTTCAATATCTCGATAGAATCAACCTGAGGCAATCCGCAAGAATGCTGGAGCGTGAATCTGGTTTATTCTTCAATCTAGCTTATTTTGAAGACTGTTTTGTTCGTGGAGCCTTTGAAGCCGCTGAGGACTACATGATGGGATTCACCGGAGTCCATGACAACATATTTTCAATAAATGTTGTTTTTGAGCTCCGGTGGCACAAGTTCCTGGCCACCCTAAGCGAAAATCATCGTGAGGAGGCGCGAGTCATCATCCGCGAAAAACTTCAACCATTGGGGATCTACAACCAAGAGTTGGTTGGCTTCGCTACTTATCTAGTGAATATGCATAACTTCAGGATGCATGAAGCTTTTTTTTACTACGGGGATCCAGAGTACCACAGGAGGGAGAGGGTGGAGTTCATTAGGGTGAACTTGGAGTCCAATCCTCTATTGTTTGGGAAAATTCGGTATCCCATTCTCAACGTGAATAATGCAGTCATCGTACCACCTCAAGTTCCAACAGCTCTAGCAGTTCCTGCCGCTTCACTAATTCCAATTCCAGCACCTCGAGCAGCTCCCGGGCCATTAGCATTACCGGGACCGAGGAATTTTAGTGTTACTCCGAGCTGGTTTCCTAGAACTCGGAGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

225

Amino Acids

25.95

Weight (kDa)

7.93

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 39 - 162 2.6e-22 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AccII CGCG 2 cut(s) 286, 300
AciI CCGC 4 cut(s) 78, 162, 298, 564
AclWI GGATC 3 cut(s) 329, 404, 417
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 486, 631
AcuI CTGAAG 1 cut(s) 361
AfaI GTAC 2 cut(s) 419, 528
AfiI CCNNNNNNNGG 2 cut(s) 337, 427
AgsI TTSAA 6 cut(s) 47, 115, 131, 158, 213, 311
AjnI CCWGG 1 cut(s) 249
AloI GAACNNNNNNTCC 2 cut(s) 446, 478
AluBI AGCT 6 cut(s) 122, 232, 392, 548, 599, 651
AluI AGCT 6 cut(s) 122, 232, 392, 548, 599, 651
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 3 cut(s) 329, 404, 417
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 2 cut(s) 591, 602
AoxI GGCC 2 cut(s) 252, 605
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 2 cut(s) 486, 631
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 605, 623, 672
AsuC2I CCSGG 3 cut(s) 603, 604, 621
AsuHPI GGTGA 2 cut(s) 178, 463
AvaI CYCGRG 2 cut(s) 591, 602
AvaII GGWCC 2 cut(s) 623, 672
AxyI CCTNAGG 1 cut(s) 68
BalI TGGCCA 1 cut(s) 254
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 608
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 504
BcnI CCSGG 3 cut(s) 603, 604, 621
BfaI CTAG 4 cut(s) 119, 359, 551, 660
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 3 cut(s) 162, 564, 597
BlsI GCNGC 3 cut(s) 163, 565, 598
Bme1390I CCNGG 4 cut(s) 251, 603, 604, 621
Bme18I GGWCC 2 cut(s) 623, 672
BmeT110I CYCGRG 2 cut(s) 591, 602
BmgT120I GGNCC 3 cut(s) 605, 623, 672
BmiI GGNNCC 3 cut(s) 151, 411, 624
BmrFI CCNGG 4 cut(s) 251, 603, 604, 621
BmsI GCATC 2 cut(s) 16, 372
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 2 cut(s) 165, 260
BpuEI CTTGAG 1 cut(s) 519
BpuMI CCSGG 3 cut(s) 603, 604, 621
BsaJI CCNNGG 2 cut(s) 602, 626
BsaWI WCCGGW 2 cut(s) 188, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 427
Bse21I CCTNAGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 602, 626
BseGI GGATG 2 cut(s) 294, 387
BseLI CCNNNNNNNGG 2 cut(s) 337, 427
BseMII CTCAG 2 cut(s) 59, 156
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 608
Bsh1236I CGCG 2 cut(s) 286, 300
BshFI GGCC 2 cut(s) 254, 607
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 2 cut(s) 591, 602
BsiSI CCGG 4 cut(s) 189, 235, 603, 620
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 2 cut(s) 337, 427
BsmFI GGGAC 1 cut(s) 636
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 2 cut(s) 254, 607
BsoBI CYCGRG 2 cut(s) 591, 602
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 321, 409
BspACI CCGC 4 cut(s) 78, 162, 298, 564
BspANI GGCC 2 cut(s) 254, 607
BspCNI CTCAG 2 cut(s) 60, 157
BspFNI CGCG 2 cut(s) 286, 300
BspLI GGNNCC 3 cut(s) 151, 411, 624
BspPI GGATC 3 cut(s) 329, 404, 417
BssECI CCNNGG 2 cut(s) 602, 626
BssMI GATC 2 cut(s) 321, 409
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 560
BstDEI CTNAG 3 cut(s) 68, 165, 260
BstF5I GGATG 2 cut(s) 294, 387
BstFNI CGCG 2 cut(s) 286, 300
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 324, 412
BstMBI GATC 2 cut(s) 321, 409
BstMWI GCNNNNNNNGC 4 cut(s) 158, 238, 560, 593
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 249, 601, 602, 619
BstUI CGCG 2 cut(s) 286, 300
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 321, 409
BstYI RGATCY 2 cut(s) 321, 409
Bsu36I CCTNAGG 1 cut(s) 68
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 254, 607
BtsCI GGATG 2 cut(s) 294, 387
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 605, 623, 672
Cfr9I CCCGGG 1 cut(s) 602
Csp6I GTAC 2 cut(s) 418, 527
CviAII CATG 3 cut(s) 175, 197, 386
CviQI GTAC 2 cut(s) 418, 527
DdeI CTNAG 3 cut(s) 68, 165, 260
DpnI GATC 2 cut(s) 323, 411
DpnII GATC 2 cut(s) 321, 409
EaeI YGGCCR 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 623, 672
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 361
Eco81I CCTNAGG 1 cut(s) 68
Eco88I CYCGRG 2 cut(s) 591, 602
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 672
EcoRII CCWGG 1 cut(s) 249
EcoT22I ATGCAT 2 cut(s) 372, 387
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 3 cut(s) 178, 200, 389
FaiI YATR 6 cut(s) 176, 198, 206, 368, 372, 387
FaqI GGGAC 1 cut(s) 636
FatI CATG 3 cut(s) 174, 196, 385
Fnu4HI GCNGC 3 cut(s) 162, 564, 597
FokI GGATG 2 cut(s) 281, 394
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 3 cut(s) 162, 564, 597
FspBI CTAG 4 cut(s) 119, 359, 551, 660
GlaI GCGC 1 cut(s) 285
GluI GCNGC 3 cut(s) 162, 564, 597
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 2 cut(s) 254, 607
HapII CCGG 4 cut(s) 189, 235, 603, 620
HhaI GCGC 1 cut(s) 286
Hin1II CATG 3 cut(s) 178, 200, 389
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 7 cut(s) 35, 60, 98, 183, 192, 288, 461
HpaII CCGG 4 cut(s) 189, 235, 603, 620
HphI GGTGA 2 cut(s) 178, 463
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 2 cut(s) 648, 669
Hpy188III TCNNGA 4 cut(s) 53, 275, 379, 413
Hpy8I GTNNAC 1 cut(s) 454
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 3 cut(s) 370, 385, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 238, 560, 593
HpyF3I CTNAG 3 cut(s) 68, 165, 260
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 3 cut(s) 178, 200, 389
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 2 cut(s) 321, 409
LmnI GCTCC 4 cut(s) 91, 149, 237, 604
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 2 cut(s) 16, 372
MaeI CTAG 4 cut(s) 119, 359, 551, 660
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 640
MalI GATC 2 cut(s) 323, 411
MboI GATC 2 cut(s) 321, 409
MboII GAAGA 2 cut(s) 103, 143
MflI RGATCY 2 cut(s) 321, 409
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 4 cut(s) 486, 573, 579, 631
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 4 cut(s) 29, 201, 297, 470
MmeI TCCRAC 2 cut(s) 36, 566
Mox20I TGGCCA 1 cut(s) 254
Mph1103I ATGCAT 2 cut(s) 372, 387
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 4 cut(s) 189, 235, 603, 620
MspR9I CCNGG 4 cut(s) 251, 603, 604, 621
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 2 cut(s) 286, 300
MwoI GCNNNNNNNGC 4 cut(s) 158, 238, 560, 593
NciI CCSGG 3 cut(s) 603, 604, 621
NdeII GATC 2 cut(s) 321, 409
NlaIII CATG 3 cut(s) 178, 200, 389
NlaIV GGNNCC 3 cut(s) 151, 411, 624
NsiI ATGCAT 2 cut(s) 372, 387
PaeR7I CTCGAG 1 cut(s) 591
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 3 cut(s) 60, 98, 183
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 3 cut(s) 163, 565, 598
PleI GAGTC 4 cut(s) 29, 200, 296, 469
PpsI GAGTC 4 cut(s) 29, 200, 296, 469
PpuMI RGGWCCY 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 151, 411, 624
PspPI GGNCC 3 cut(s) 605, 623, 672
PspPPI RGGWCCY 1 cut(s) 672
PspXI VCTCGAGB 1 cut(s) 591
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 2 cut(s) 321, 409
RsaI GTAC 2 cut(s) 419, 528
RsaNI GTAC 2 cut(s) 418, 527
RseI CAYNNNNRTG 1 cut(s) 449
SacI GAGCTC 1 cut(s) 234
SatI GCNGC 3 cut(s) 162, 564, 597
Sau3AI GATC 2 cut(s) 321, 409
Sau96I GGNCC 3 cut(s) 605, 623, 672
SchI GAGTC 4 cut(s) 29, 201, 297, 470
ScrFI CCNGG 4 cut(s) 251, 603, 604, 621
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 2 cut(s) 16, 372
Sfr274I CTCGAG 1 cut(s) 591
SinI GGWCC 2 cut(s) 623, 672
SlaI CTCGAG 1 cut(s) 591
SmaI CCCGGG 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 534, 591
SmoI CTYRAG 2 cut(s) 534, 591
Sse9I AATT 4 cut(s) 486, 573, 579, 631
SsiI CCGC 4 cut(s) 78, 162, 298, 564
SspMI CTAG 4 cut(s) 119, 359, 551, 660
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 4 cut(s) 249, 601, 602, 619
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 510
TaqI TCGA 2 cut(s) 54, 592
TaqII GACCGA 1 cut(s) 640
TasI AATT 4 cut(s) 486, 573, 579, 631
TauI GCSGC 2 cut(s) 164, 566
TfiI GAWTC 3 cut(s) 60, 98, 183
TseI GCWGC 1 cut(s) 596
TspDTI ATGAA 2 cut(s) 402, 433
TspMI CCCGGG 1 cut(s) 602
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 2 cut(s) 623, 672
XapI RAATTY 2 cut(s) 486, 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 591
XmaI CCCGGG 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 4 cut(s) 119, 359, 551, 660
Zsp2I ATGCAT 2 cut(s) 372, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.