Rh6CG396300

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012579
Physical Location & Seq
Reverse (-)
58331792 .. 58332781
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG396300.1

Sequence Viewer

Length: 534 bp
ATGGCTGACGACGCTCACAAACGTCAGGTTTTTGCTGTGATTGAATTTCTTGACGCAACTCATTGTCATGAAACTGCTCGCACGTACGCTAGCTGGAAAAAGAAACGGGCTATTTCTTCAACCTGGCTTATTTTGAACACTGCTTTGTGCGGGGATATATATTTCGAAGAGGCTGAGGACTACCTCGCTGGCTTTCTTCCAAGTATCCACGGTAATGTCTACTCCGTCAATGCTTACTTCGAGTTAAACAGGCAGAAGTTTCTGGCGGTGCTTGATGAGAACGACCATACTGAGGCGCAAATAATCATTGACGAAGATCTCAGACCCTTTGAGCGATACCACCCCAATCTGGTTGTTTCTGCAAGCGAGTTAGCAAGTTTGAATGATTTCCGGACTCATGAAGCGTTCGCGGATTATGGAATTCCTGAAGAGGAGAGAATGGAGAGGCTGGGGTTCGTGAGAACCAATTTGGAGGTGAATCCTCTTCTCGTCGGAAAGATTCAATATCTCCCACCAACACCTCCTCAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

177

Amino Acids

20.32

Weight (kDa)

4.93

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 55 - 166 1.8e-19 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 3 cut(s) 150, 266, 410
AcsI RAATTY 2 cut(s) 44, 420
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 292, 349
AgsI TTSAA 5 cut(s) 44, 120, 136, 382, 503
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 2 cut(s) 93, 530
AluI AGCT 2 cut(s) 93, 530
Aor13HI TCCGGA 1 cut(s) 390
ApoI RAATTY 2 cut(s) 44, 420
Asp700I GAANNNNTTC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 124
BciVI GTATCC 1 cut(s) 215
BfaI CTAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 215
BglII AGATCT 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BmtI GCTAGC 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 349
BseAI TCCGGA 1 cut(s) 390
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 292, 349
BseMII CTCAG 3 cut(s) 165, 282, 334
BseRI GAGGAG 2 cut(s) 446, 513
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 391
BsiWI CGTACG 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 292, 349
Bsp119I TTCGAA 1 cut(s) 165
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 3 cut(s) 150, 266, 410
BspCNI CTCAG 3 cut(s) 166, 283, 333
BspEI TCCGGA 1 cut(s) 390
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 2 cut(s) 67, 397
BspOI GCTAGC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 3 cut(s) 162, 423, 489
BstBAI YACGTR 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 79, 91, 190, 364
BstDEI CTNAG 3 cut(s) 174, 291, 320
BstDSI CCRYGG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstUI CGCG 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 4 cut(s) 79, 91, 190, 364
CciI TCATGA 2 cut(s) 67, 397
CfoI GCGC 1 cut(s) 298
CseI GACGC 2 cut(s) 20, 62
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 68, 398
CviJI RGCY 8 cut(s) 5, 93, 110, 127, 173, 192, 448, 530
CviKI_1 RGCY 8 cut(s) 5, 93, 110, 127, 173, 192, 448, 530
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 174, 291, 320
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 3 cut(s) 162, 423, 489
EarI CTCTTC 3 cut(s) 162, 423, 489
Eco57I CTGAAG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 71, 401
FaiI YATR 6 cut(s) 69, 158, 160, 288, 399, 417
FatI CATG 2 cut(s) 67, 397
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 219
FspBI CTAG 1 cut(s) 90
GlaI GCGC 1 cut(s) 297
GsaI CCCAGC 1 cut(s) 452
HapII CCGG 1 cut(s) 391
HgaI GACGC 2 cut(s) 20, 62
HhaI GCGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 71, 401
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 3 cut(s) 394, 478, 499
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 323, 494
Hpy188III TCNNGA 6 cut(s) 50, 68, 391, 398, 425, 457
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 2 cut(s) 14, 494
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 22, 83
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 174, 291, 320
HpySE526I ACGT 2 cut(s) 22, 83
Hsp92II CATG 2 cut(s) 71, 401
HspAI GCGC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 390
Kzo9I GATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 90
MaeII ACGT 2 cut(s) 22, 83
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 6 cut(s) 108, 179, 188, 326, 440, 476
MflI RGATCY 1 cut(s) 316
MluCI AATT 3 cut(s) 44, 420, 466
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 472
MroI TCCGGA 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 2 cut(s) 66, 213
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 316
NheI GCTAGC 1 cut(s) 89
NlaIII CATG 2 cut(s) 71, 401
NspV TTCGAA 1 cut(s) 165
PagI TCATGA 2 cut(s) 67, 397
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 2 cut(s) 478, 499
Pfl23II CGTACG 1 cut(s) 84
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Ppu21I YACGTR 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 122
PspLI CGTACG 1 cut(s) 84
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 2 cut(s) 66, 213
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 124
SetI ASST 9 cut(s) 25, 30, 86, 95, 125, 186, 477, 523, 532
SfuI TTCGAA 1 cut(s) 165
SmiMI CAYNNNNRTG 2 cut(s) 66, 213
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 3 cut(s) 44, 420, 466
SsiI CCGC 3 cut(s) 150, 266, 410
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 25, 86
TaqI TCGA 2 cut(s) 165, 240
TasI AATT 3 cut(s) 44, 420, 466
TfiI GAWTC 2 cut(s) 478, 499
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 84, 414
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 145
XapI RAATTY 2 cut(s) 44, 420
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.