Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013298

Physical Location & Seq

Genomic Coordinates Reverse (-)

44963725 .. 44970078

Gene Structure 6354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G550200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGTAATCGATTTACTTGCATGTCAAAGAAGGATACTAAAGATATTGGATCCAGAAGCAAGAGAGTAAATCGCTCACAGAGGAAACTGCTGGCTGAGGAAGAGTTCTTGCACAGGCAAGCTCTGTCTATGGCTCTTCATCAGCACCAATTGTCTCAGAGGTTTGACGGATCCATGTCTAGAAGAATTGGGTCCACAAGCTCTAGGAGACTCGCTGATCCATTCGCTAATGGGAAGCAGGTACCAGAATCTTTGGAGAATATTAAAACAAAAAAATTTATTCTGGTACATGGAGAAGGGTTTGGAGCATGGTGTTGGTACAAAACAATTGCTCTACTAGAGGAAGCAGGATTGCTTCCGGTTACCTTTGATCTCAAGGGTTCTGGTATTGATCTTACAGATACTAACTCTGTTGCTACGCTGGCAGAATATTCAAAACCATTGATTGAATATCTAGAAAATCTTGAAGAGGATGAAAAGGTTATCTTGGTTGGTCACAGTAATGGAGGTGCCTGTGTTTCTTATGCACTAGAGCACTTTTCGCAGAAAATTTCAAAAGCAATTTTCATCTGTGCTACTATGGTGTCTGATGGCCAGAGACCGTTTGATGTGTTCGCTGAAGAGCTTGGTTCTGCAGAACAATTTATGCAAGGGTCAAAGTTTTTGATTCATGGGAATGGAAAAGACAAGCCTCCTACAGGATTCATGTTTGAGAAAGAGCAGATGAAAGGGTTATATTTCAATCAATCTCCTGCAAAGGATGTTGCTCTGGCCATGGTTTCCATGAGACCTATCCCACTAGGCCCAATCATGGAAAAACTGTCATTGTCACCCAAAAACTATGGAACTAGCCGGCGGTTCTTCATTCAAACATTAGATGATCGGGCACTTTCCCCAGATGTCCAAGAAAAGCTAGTGAGGGAAAACCCCCCAGAGGGAGTGTTCAAGATAAAAGGCAGTGACCACTGCCCATTCTTCTCAAAGCCACAATCACTGCACAAAATGTTGGTGGAAATTGCTCAGATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

344

Amino Acids

38.44

Weight (kDa)

8.66

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33990 AT4G09900
fragaria_vesca	FvH4_5g32490
malus_domestica	MD08G1216700.v1.1 MD15G1403900.v1.1
prunus_persica	Prupe.1G550200_v2.0.a1
pyrus_communis	pycom08g18760 pycom15g36120
rosa_chinensis	RchiOBHm_Chr7g0229071
rosa_laevigata	RLG00000001533
rosa_multiflora	Rmu_sc0000271.1_g000022
rosa_roxburghii	Rroxscaffold_3G00230770
rosa_rugosa	Rorug07G0255400
rosa_samantha	Rh7AG406500 Rh7BG385900 Rh7CG424300 Rh7DG400800
rosa_wichuraiana	Rw7G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	2 cut(s)	241, 509
AciI	CCGC	1 cut(s)	856
AclWI	GGATC	5 cut(s)	45, 58, 165, 178, 212
AcoI	YGGCCR	2 cut(s)	592, 771
AcsI	RAATTY	2 cut(s)	275, 549
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	3 cut(s)	243, 288, 320
AfiI	CCNNNNNNNGG	4 cut(s)	698, 811, 934, 935
AgsI	TTSAA	7 cut(s)	435, 449, 467, 555, 742, 869, 946
AluBI	AGCT	4 cut(s)	122, 201, 625, 913
AluI	AGCT	4 cut(s)	122, 201, 625, 913
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	4 cut(s)	159, 202, 592, 781
AlwI	GGATC	5 cut(s)	45, 58, 165, 178, 212
AoxI	GGCC	3 cut(s)	592, 771, 802
ApoI	RAATTY	2 cut(s)	275, 549
Asp718I	GGTACC	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	192, 803
AsuHPI	GGTGA	1 cut(s)	822
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	889
BalI	TGGCCA	2 cut(s)	594, 773
BamHI	GGATCC	2 cut(s)	50, 170
BanI	GGYRCC	2 cut(s)	241, 509
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	584
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	28
BcoDI	GTCTC	4 cut(s)	159, 202, 592, 781
BfaI	CTAG	8 cut(s)	180, 204, 338, 455, 530, 800, 849, 914
BfmI	CTRYAG	2 cut(s)	633, 696
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 803
BmiI	GGNNCC	5 cut(s)	52, 172, 193, 243, 511
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	10
BsaI	GGTCTC	2 cut(s)	592, 781
BsaJI	CCNNGG	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	4 cut(s)	698, 811, 934, 935
Bse118I	RCCGGY	1 cut(s)	852
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	2 cut(s)	478, 766
BseLI	CCNNNNNNNGG	4 cut(s)	698, 811, 934, 935
BseMII	CTCAG	2 cut(s)	87, 170
BseSI	GKGCMC	1 cut(s)	889
BsgI	GTGCAG	1 cut(s)	980
BshFI	GGCC	3 cut(s)	594, 773, 804
BshNI	GGYRCC	2 cut(s)	241, 509
BshVI	ATCGAT	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	359, 853
BslI	CCNNNNNNNGG	4 cut(s)	698, 811, 934, 935
BsmAI	GTCTC	4 cut(s)	159, 202, 592, 781
BsnI	GGCC	3 cut(s)	594, 773, 804
Bso31I	GGTCTC	2 cut(s)	592, 781
Bsp1286I	GDGCHC	2 cut(s)	537, 889
Bsp143I	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	1 cut(s)	856
BspANI	GGCC	3 cut(s)	594, 773, 804
BspCNI	CTCAG	2 cut(s)	88, 169
BspDI	ATCGAT	1 cut(s)	10
BspLI	GGNNCC	5 cut(s)	52, 172, 193, 243, 511
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	5 cut(s)	45, 58, 165, 178, 212
BspQI	GCTCTTC	2 cut(s)	141, 615
BspT107I	GGYRCC	2 cut(s)	241, 509
BspTNI	GGTCTC	2 cut(s)	592, 781
BsrFI	RCCGGY	1 cut(s)	852
BssAI	RCCGGY	1 cut(s)	852
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
BssT1I	CCWWGG	1 cut(s)	774
Bst4CI	ACNGT	3 cut(s)	500, 603, 822
Bst6I	CTCTTC	4 cut(s)	96, 141, 462, 615
BstC8I	GCNNGC	4 cut(s)	93, 120, 423, 854
BstDEI	CTNAG	3 cut(s)	96, 156, 1020
BstDSI	CCRYGG	1 cut(s)	774
BstEII	GGTNACC	1 cut(s)	361
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	2 cut(s)	478, 766
BstKTI	GATC	6 cut(s)	53, 173, 220, 373, 394, 883
BstMAI	GTCTC	4 cut(s)	159, 202, 592, 781
BstMBI	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 541
BstNSI	RCATGY	1 cut(s)	25
BstPI	GGTNACC	1 cut(s)	361
BstSFI	CTRYAG	2 cut(s)	633, 696
BstSLI	GKGCMC	1 cut(s)	889
BstX2I	RGATCY	2 cut(s)	50, 170
BstYI	RGATCY	2 cut(s)	50, 170
Bsu15I	ATCGAT	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	594, 773, 804
BsuTUI	ATCGAT	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	774
BtsCI	GGATG	2 cut(s)	478, 766
BtsI	GCAGTG	3 cut(s)	964, 964, 992
BtsIMutI	CAGTG	3 cut(s)	964, 964, 992
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	4 cut(s)	93, 120, 423, 854
Cfr10I	RCCGGY	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	192, 803
ClaI	ATCGAT	1 cut(s)	10
Csp6I	GTAC	3 cut(s)	242, 287, 319
CviAII	CATG	9 cut(s)	22, 175, 290, 309, 671, 706, 775, 784, 811
CviQI	GTAC	3 cut(s)	242, 287, 319
DdeI	CTNAG	3 cut(s)	96, 156, 1020
DpnI	GATC	6 cut(s)	52, 172, 219, 372, 393, 882
DpnII	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
EaeI	YGGCCR	2 cut(s)	592, 771
Eam1104I	CTCTTC	4 cut(s)	96, 141, 462, 615
EarI	CTCTTC	4 cut(s)	96, 141, 462, 615
Eco130I	CCWWGG	1 cut(s)	774
Eco31I	GGTCTC	2 cut(s)	592, 781
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	639
Eco91I	GGTNACC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO65I	GGTNACC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	9 cut(s)	25, 178, 293, 312, 674, 709, 778, 787, 814
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	9 cut(s)	21, 174, 289, 308, 670, 705, 774, 783, 810
FokI	GGATG	2 cut(s)	485, 773
FspBI	CTAG	8 cut(s)	180, 204, 338, 455, 530, 800, 849, 914
HaeIII	GGCC	3 cut(s)	594, 773, 804
HapII	CCGG	2 cut(s)	359, 853
Hin1II	CATG	9 cut(s)	25, 178, 293, 312, 674, 709, 778, 787, 814
HinfI	GANTC	5 cut(s)	210, 248, 667, 702, 1024
HpaII	CCGG	2 cut(s)	359, 853
HphI	GGTGA	1 cut(s)	822
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	159, 589, 1023
Hpy188III	TCNNGA	5 cut(s)	54, 180, 455, 464, 946
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	25, 290
HpyCH4III	ACNGT	3 cut(s)	500, 603, 822
HpyCH4V	TGCA	7 cut(s)	21, 112, 527, 635, 649, 755, 997
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 541
HpyF3I	CTNAG	3 cut(s)	96, 156, 1020
Hsp92II	CATG	9 cut(s)	25, 178, 293, 312, 674, 709, 778, 787, 814
KpnI	GGTACC	1 cut(s)	245
KroI	GCCGGC	1 cut(s)	852
KroNI	GCCGGC	1 cut(s)	854
Kzo9I	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
LguI	GCTCTTC	2 cut(s)	141, 615
LmnI	GCTCC	1 cut(s)	305
MaeI	CTAG	8 cut(s)	180, 204, 338, 455, 530, 800, 849, 914
MaeIII	GTNAC	4 cut(s)	361, 494, 828, 959
MalI	GATC	6 cut(s)	52, 172, 219, 372, 393, 882
MboI	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
MboII	GAAGA	7 cut(s)	113, 128, 195, 479, 632, 853, 967
MfeI	CAATTG	2 cut(s)	149, 327
MflI	RGATCY	2 cut(s)	50, 170
MhlI	GDGCHC	2 cut(s)	537, 889
MlsI	TGGCCA	2 cut(s)	594, 773
MluCI	AATT	8 cut(s)	149, 186, 275, 327, 549, 561, 641, 1014
MluNI	TGGCCA	2 cut(s)	594, 773
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	9 cut(s)	75, 91, 153, 334, 463, 500, 702, 912, 928
Mox20I	TGGCCA	2 cut(s)	594, 773
MroNI	GCCGGC	1 cut(s)	852
MscI	TGGCCA	2 cut(s)	594, 773
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	501, 675
Msp20I	TGGCCA	2 cut(s)	594, 773
MspI	CCGG	2 cut(s)	359, 853
MunI	CAATTG	2 cut(s)	149, 327
MwoI	GCNNNNNNNGC	2 cut(s)	422, 541
NaeI	GCCGGC	1 cut(s)	854
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
NgoMIV	GCCGGC	1 cut(s)	852
NlaIII	CATG	9 cut(s)	25, 178, 293, 312, 674, 709, 778, 787, 814
NlaIV	GGNNCC	5 cut(s)	52, 172, 193, 243, 511
NmuCI	GTSAC	3 cut(s)	494, 828, 959
NspI	RCATGY	1 cut(s)	25
PciSI	GCTCTTC	2 cut(s)	141, 615
PdiI	GCCGGC	1 cut(s)	854
PfeI	GAWTC	4 cut(s)	248, 667, 702, 1024
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	361
PspN4I	GGNNCC	5 cut(s)	52, 172, 193, 243, 511
PspPI	GGNCC	2 cut(s)	192, 803
PstI	CTGCAG	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	50, 170
RsaI	GTAC	3 cut(s)	243, 288, 320
RsaNI	GTAC	3 cut(s)	242, 287, 319
RseI	CAYNNNNRTG	2 cut(s)	501, 675
SapI	GCTCTTC	2 cut(s)	141, 615
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	6 cut(s)	50, 170, 217, 370, 391, 880
Sau96I	GGNCC	2 cut(s)	192, 803
SchI	GAGTC	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	537, 889
SfcI	CTRYAG	2 cut(s)	633, 696
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	501, 675
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	8 cut(s)	149, 186, 275, 327, 549, 561, 641, 1014
SsiI	CCGC	1 cut(s)	856
SspI	AATATT	2 cut(s)	262, 431
SspMI	CTAG	8 cut(s)	180, 204, 338, 455, 530, 800, 849, 914
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	3 cut(s)	500, 603, 822
TaqI	TCGA	1 cut(s)	10
TasI	AATT	8 cut(s)	149, 186, 275, 327, 549, 561, 641, 1014
TfiI	GAWTC	4 cut(s)	248, 667, 702, 1024
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	3 cut(s)	964, 971, 999
TseFI	GTSAC	3 cut(s)	494, 828, 959
Tsp45I	GTSAC	3 cut(s)	494, 828, 959
TspDTI	ATGAA	7 cut(s)	128, 489, 556, 659, 694, 740, 853
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	3 cut(s)	964, 971, 999
VpaK11BI	GGWCC	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	2 cut(s)	275, 549
XbaI	TCTAGA	2 cut(s)	179, 454
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	8 cut(s)	180, 204, 338, 455, 530, 800, 849, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.