Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Reverse (-)

23847575 .. 23851235

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0255400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGACGTCGTTTCTGCACTTCCCTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCTTCCCTCGCAGCTCGCCCCAATCCCACCTCGCTCTCTCAGACCCGTGTTAAATGCAGGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCGCCATAGACGTTGTGGCTGATGTCAGGCCTGAACGGGTTGTGGTATTGGGAGGGAGTGGTTTTGTTGGTTCTGCTATATGTAAGGCTGCGGTGTCCAAAGGCATAGAGGTCGTAGGTGTGAGCAGGTCGGGGCGGCCGACGTACTCCGGTTCATGGATTGATCAGGTTAATTGGGTACCAGGAGACGTTTTTTATGTAAACTGGGATGCAGTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTGGCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTCGTTGCTGTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCGGTGCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTCACAGGAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGCGTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATTTGAGATTCCTTTGGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGTGCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCTGCTCTTGGCTCCACCTGTTAGTGTTGATGATGTTGCGTTTGCTGCAATCAATGCAATAAGAGACGATGACTTCTTCGGCATTTTTACTATTGCACAAATTAAGGAAGCTGCTGAGAAGGTTAGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

297

Amino Acids

31.76

Weight (kDa)

6.2

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	66 - 221	1.1e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	70 - 197	2.2e-09	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	105, 273
Acc65I	GGTACC	1 cut(s)	334
AccB1I	GGYRCC	2 cut(s)	158, 334
AccII	CGCG	1 cut(s)	54
AciI	CCGC	4 cut(s)	52, 54, 248, 292
AclWI	GGATC	1 cut(s)	687
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	705
AcyI	GRCGYC	2 cut(s)	5, 159
AfaI	GTAC	4 cut(s)	119, 302, 336, 372
AfiI	CCNNNNNNNGG	2 cut(s)	312, 611
AgsI	TTSAA	2 cut(s)	151, 399
AjnI	CCWGG	2 cut(s)	337, 628
AleI	CACNNNNGTG	1 cut(s)	389
AluBI	AGCT	4 cut(s)	71, 578, 726, 872
AluI	AGCT	4 cut(s)	71, 578, 726, 872
Alw26I	GTCTC	2 cut(s)	336, 819
AlwI	GGATC	1 cut(s)	687
AoxI	GGCC	3 cut(s)	185, 293, 381
ApeKI	GCWGC	6 cut(s)	68, 245, 417, 473, 806, 872
ApoI	RAATTY	1 cut(s)	705
AseI	ATTAAT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	705
Asp718I	GGTACC	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	56, 381
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	158, 334
BbvI	GCAGC	6 cut(s)	80, 232, 429, 460, 793, 859
BccI	CCATC	1 cut(s)	653
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	2 cut(s)	339, 630
BciVI	GTATCC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	336, 819
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	162
BfuAI	ACCTGC	2 cut(s)	105, 273
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	7 cut(s)	69, 246, 293, 418, 474, 807, 873
BlsI	GCNGC	7 cut(s)	70, 247, 294, 419, 475, 808, 874
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	2 cut(s)	339, 630
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	56, 381
BmiI	GGNNCC	4 cut(s)	160, 336, 382, 774
BmrFI	CCNGG	2 cut(s)	339, 630
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	3 cut(s)	355, 420, 764
BmuI	ACTGGG	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BsaAI	YACGTR	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	2 cut(s)	5, 159
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 611
Bse1I	ACTGG	2 cut(s)	365, 695
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	339, 630
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	370, 755
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	312, 611
BseMII	CTCAG	3 cut(s)	110, 711, 867
BseNI	ACTGG	2 cut(s)	365, 695
BseX3I	CGGCCG	1 cut(s)	293
BseXI	GCAGC	6 cut(s)	80, 232, 429, 460, 793, 859
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	187, 295, 383
BshNI	GGYRCC	2 cut(s)	158, 334
BsiEI	CGRYCG	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	156, 306
BslI	CCNNNNNNNGG	2 cut(s)	312, 611
BsmAI	GTCTC	2 cut(s)	336, 819
BsmBI	CGTCTC	2 cut(s)	336, 819
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	187, 295, 383
Bsp143I	GATC	4 cut(s)	319, 507, 679, 760
BspACI	CCGC	4 cut(s)	52, 54, 248, 292
BspANI	GGCC	3 cut(s)	187, 295, 383
BspCNI	CTCAG	3 cut(s)	109, 712, 868
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	4 cut(s)	160, 336, 382, 774
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	2 cut(s)	105, 273
BspPI	GGATC	1 cut(s)	687
BspT107I	GGYRCC	2 cut(s)	158, 334
BsrI	ACTGG	2 cut(s)	365, 695
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	319, 507, 679, 760
BssNI	GRCGYC	2 cut(s)	5, 159
Bst2UI	CCWGG	2 cut(s)	339, 630
Bst6I	CTCTTC	2 cut(s)	42, 753
BstACI	GRCGYC	2 cut(s)	5, 159
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	73, 130
BstDEI	CTNAG	3 cut(s)	96, 720, 876
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	370, 755
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	4 cut(s)	322, 510, 682, 763
BstMAI	GTCTC	2 cut(s)	336, 819
BstMBI	GATC	4 cut(s)	319, 507, 679, 760
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 470, 806, 815
BstNI	CCWGG	2 cut(s)	339, 630
BstSCI	CCNGG	2 cut(s)	337, 628
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	6 cut(s)	80, 232, 429, 460, 793, 859
BstX2I	RGATCY	1 cut(s)	679
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	679
BstZI	CGGCCG	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	187, 295, 383
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	370, 755
BtsI	GCAGTG	2 cut(s)	384, 396
BtsIMutI	CAGTG	3 cut(s)	384, 396, 702
BveI	ACCTGC	2 cut(s)	105, 273
Cac8I	GCNNGC	2 cut(s)	73, 130
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	56, 381
Cfr42I	CCGCGG	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	4 cut(s)	118, 301, 335, 371
CviAII	CATG	2 cut(s)	312, 518
CviQI	GTAC	4 cut(s)	118, 301, 335, 371
DdeI	CTNAG	3 cut(s)	96, 720, 876
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	4 cut(s)	321, 509, 681, 762
DpnII	GATC	4 cut(s)	319, 507, 679, 760
EaeI	YGGCCR	1 cut(s)	293
EagI	CGGCCG	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	42, 753
EarI	CTCTTC	2 cut(s)	42, 753
EclXI	CGGCCG	1 cut(s)	293
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	705
EcoRII	CCWGG	2 cut(s)	337, 628
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
Esp3I	CGTCTC	2 cut(s)	336, 819
FaeI	CATG	2 cut(s)	315, 521
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FatI	CATG	2 cut(s)	311, 517
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	7 cut(s)	69, 246, 293, 418, 474, 807, 873
FokI	GGATG	2 cut(s)	377, 742
Fsp4HI	GCNGC	7 cut(s)	69, 246, 293, 418, 474, 807, 873
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	7 cut(s)	69, 246, 293, 418, 474, 807, 873
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	187, 295, 383
HapII	CCGG	2 cut(s)	156, 306
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	5, 159
Hin1II	CATG	2 cut(s)	315, 521
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	581, 670
HpaII	CCGG	2 cut(s)	156, 306
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	99, 586, 684, 760
Hpy188III	TCNNGA	2 cut(s)	505, 552
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	10, 301
HpyAV	CCTTC	4 cut(s)	51, 69, 646, 874
HpyCH4IV	ACGT	5 cut(s)	5, 168, 299, 345, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 470, 806, 815
HpyF3I	CTNAG	3 cut(s)	96, 720, 876
HpySE526I	ACGT	5 cut(s)	5, 168, 299, 345, 712
Hsp92I	GRCGYC	2 cut(s)	5, 159
Hsp92II	CATG	2 cut(s)	315, 521
HspAI	GCGC	1 cut(s)	159
KasI	GGCGCC	1 cut(s)	158
KpnI	GGTACC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	319
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	319, 507, 679, 760
LmnI	GCTCC	1 cut(s)	778
Lsp1109I	GCAGC	6 cut(s)	80, 232, 429, 460, 793, 859
LweI	GCATC	3 cut(s)	355, 420, 764
MabI	ACCWGGT	1 cut(s)	628
MaeII	ACGT	5 cut(s)	5, 168, 299, 345, 712
MalI	GATC	4 cut(s)	321, 509, 681, 762
MboI	GATC	4 cut(s)	319, 507, 679, 760
MboII	GAAGA	4 cut(s)	29, 36, 740, 829
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	679
MluCI	AATT	5 cut(s)	151, 328, 402, 705, 861
Mly113I	GGCGCC	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	5 cut(s)	108, 327, 441, 623, 864
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	2 cut(s)	156, 306
MspR9I	CCNGG	2 cut(s)	339, 630
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	2 cut(s)	339, 630
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	138, 470, 806, 815
NarI	GGCGCC	1 cut(s)	159
NdeII	GATC	4 cut(s)	319, 507, 679, 760
NlaIII	CATG	2 cut(s)	315, 521
NlaIV	GGNNCC	4 cut(s)	160, 336, 382, 774
OliI	CACNNNNGTG	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	581, 670
PkrI	GCNGC	7 cut(s)	70, 247, 294, 419, 475, 808, 874
PluTI	GGCGCC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	713
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	337, 628
PspGI	CCWGG	2 cut(s)	337, 628
PspN4I	GGNNCC	4 cut(s)	160, 336, 382, 774
PspPI	GGNCC	2 cut(s)	56, 381
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	4 cut(s)	119, 302, 336, 372
RsaNI	GTAC	4 cut(s)	118, 301, 335, 371
RseI	CAYNNNNRTG	1 cut(s)	389
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	5 cut(s)	108, 327, 441, 623, 864
SatI	GCNGC	7 cut(s)	69, 246, 293, 418, 474, 807, 873
Sau3AI	GATC	4 cut(s)	319, 507, 679, 760
Sau96I	GGNCC	2 cut(s)	56, 381
ScaI	AGTACT	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	339, 630
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	3 cut(s)	355, 420, 764
SfcI	CTRYAG	1 cut(s)	387
SfoI	GGCGCC	1 cut(s)	160
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	5 cut(s)	151, 328, 402, 705, 861
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	4 cut(s)	52, 54, 248, 292
SspDI	GGCGCC	1 cut(s)	158
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	337, 628
TaiI	ACGT	5 cut(s)	8, 171, 302, 348, 715
TaqI	TCGA	1 cut(s)	657
TasI	AATT	5 cut(s)	151, 328, 402, 705, 861
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	2 cut(s)	581, 670
Tru1I	TTAA	5 cut(s)	108, 327, 441, 623, 864
Tru9I	TTAA	5 cut(s)	108, 327, 441, 623, 864
TscAI	CASTG	3 cut(s)	391, 396, 702
TseI	GCWGC	6 cut(s)	68, 245, 417, 473, 806, 872
TspDTI	ATGAA	3 cut(s)	300, 537, 625
TspRI	CASTG	3 cut(s)	391, 396, 702
VpaK11BI	GGWCC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	1 cut(s)	705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	705
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.