Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Forward (+)

23505250 .. 23506510

Gene Structure 1261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGCAATCATCAAACTGTATTGAAGCAATTGGAGCCATGGTGTGAACTTAAAGATAAAGTGGTTCTTGTGACAGGTGCTTCCTCTGGTATAGGGAGAGAGATCTGTCTTGATCTATGCAAAGCTGGTTGTAAGATTGTAGCAGCAGCTCGTCGTGTTGATCGTCTCAACTCTCTCTGTTCTGAAATCAACAGCTTTGGTGCTATCGGAGTCCAAGCCGTAGCACTTGAGCTAGACGTTTCATCAGAAGCAGACACTATTCGAAAAGCGGTTAAAGAAGCTTGGGAAACCTTTGGAAAGATCGATGTTTTGATCAATAATGCCGGAATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAAGAAGAATGGGACAAAGTCTTTAGAACCAACTTAACCGGATCTTGGTTAATATCCAAATACGTCTGCCTTTTGATGCGTGACGCTGAGCGCGGGGGCTCGGTGATTAACGTCTCGTCGATCTCTGGGCTTCATCGCGGTTTGTTGCGCGGTGGACTAGCGTATGCTTGTTCCAAAGGTGGTGTTGACACCATGACGAGGATGATGGCTATTGAGTTAGCTGTTTATAAGATCAGAGTGAACTCGATCGCACCGGGGATTTTCAGGTCAGAGATCACACAAGGTCTTTTCCAGAAAGAGTGGCTCAAGAAGGTTACGGAAAAGGTTGTACCATTAAAGATGCAACAGACTGTGGATCCGGGGCTTACATCTCTTGTTCGCTATCTCATTCACGATTCTTCTCAATATGTCACCGGGAATACATACATTGTCGATTCCGGAACTACACTGCCCGGTGTGCCCATTTTTTCTTCTCTTTCTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

282

Amino Acids

30.74

Weight (kDa)

8.62

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	22 - 223	3e-53	short chain dehydrogenase
KR	PF08659	24 - 188	3.9e-12	KR domain
adh_short_C2	PF13561	28 - 272	4e-47	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AccII	CGCG	3 cut(s)	456, 501, 513
AccIII	TCCGGA	1 cut(s)	800
AciI	CCGC	4 cut(s)	269, 456, 501, 513
AclWI	GGATC	3 cut(s)	412, 713, 726
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	2 cut(s)	408, 561
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	6 cut(s)	125, 149, 195, 232, 281, 584
AluI	AGCT	6 cut(s)	125, 149, 195, 232, 281, 584
Alw26I	GTCTC	2 cut(s)	170, 481
AlwI	GGATC	3 cut(s)	412, 713, 726
Aor13HI	TCCGGA	1 cut(s)	800
ApeKI	GCWGC	2 cut(s)	143, 146
AspLEI	GCGC	2 cut(s)	456, 513
AsuC2I	CCSGG	4 cut(s)	618, 723, 778, 816
AsuHPI	GGTGA	2 cut(s)	478, 766
AsuII	TTCGAA	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	825
BamHI	GGATCC	1 cut(s)	718
BanII	GRGCYC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	155, 158
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	4 cut(s)	618, 723, 778, 816
BcoDI	GTCTC	2 cut(s)	170, 481
BfaI	CTAG	2 cut(s)	233, 521
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	2 cut(s)	144, 147
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	2 cut(s)	145, 148
Bme1390I	CCNGG	4 cut(s)	618, 723, 778, 816
BmiI	GGNNCC	2 cut(s)	36, 720
BmrFI	CCNGG	4 cut(s)	618, 723, 778, 816
BmsI	GCATC	2 cut(s)	429, 693
Bpu1102I	GCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	262
BpuEI	CTTGAG	2 cut(s)	248, 653
BpuMI	CCSGG	4 cut(s)	618, 723, 778, 816
Bsa29I	ATCGAT	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	38, 617, 722
BsaWI	WCCGGW	2 cut(s)	401, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 561
Bse3DI	GCAATG	1 cut(s)	343
BseAI	TCCGGA	1 cut(s)	800
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	38, 617, 722
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	408, 561
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	2 cut(s)	155, 158
Bsh1236I	CGCG	3 cut(s)	456, 501, 513
Bsh1285I	CGRYCG	1 cut(s)	612
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	612
BsiSI	CCGG	7 cut(s)	324, 402, 617, 722, 777, 801, 816
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	408, 561
BsmAI	GTCTC	2 cut(s)	170, 481
BsmBI	CGTCTC	2 cut(s)	170, 481
BsmFI	GGGAC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	464, 825
Bsp13I	TCCGGA	1 cut(s)	800
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	4 cut(s)	269, 456, 501, 513
BspCNI	CTCAG	1 cut(s)	442
BspDI	ATCGAT	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	800
BspFNI	CGCG	3 cut(s)	456, 501, 513
BspLI	GGNNCC	2 cut(s)	36, 720
BspPI	GGATC	3 cut(s)	412, 713, 726
BspT104I	TTCGAA	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	38, 617, 722
BssT1I	CCWWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	19, 715
BstBI	TTCGAA	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	570
BstFNI	CGCG	3 cut(s)	456, 501, 513
BstHHI	GCGC	2 cut(s)	456, 513
BstMAI	GTCTC	2 cut(s)	170, 481
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 820
BstSCI	CCNGG	4 cut(s)	616, 721, 776, 814
BstSLI	GKGCMC	1 cut(s)	825
BstUI	CGCG	3 cut(s)	456, 501, 513
BstV1I	GCAGC	2 cut(s)	155, 158
BstX2I	RGATCY	3 cut(s)	102, 404, 718
BstYI	RGATCY	3 cut(s)	102, 404, 718
Bsu15I	ATCGAT	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	482
BtsCI	GGATG	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	809
BtsIMutI	CAGTG	1 cut(s)	809
CfoI	GCGC	2 cut(s)	456, 513
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	2 cut(s)	39, 556
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	38
Esp3I	CGTCTC	2 cut(s)	170, 481
FaeI	CATG	2 cut(s)	42, 559
FaiI	YATR	8 cut(s)	40, 92, 118, 528, 557, 591, 771, 787
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	38, 555
FauI	CCCGC	1 cut(s)	449
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	144, 147
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	144, 147
FspBI	CTAG	2 cut(s)	233, 521
GlaI	GCGC	2 cut(s)	455, 512
GluI	GCNGC	2 cut(s)	144, 147
HapII	CCGG	7 cut(s)	324, 402, 617, 722, 777, 801, 816
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	2 cut(s)	456, 513
Hin1II	CATG	2 cut(s)	42, 559
Hin6I	GCGC	2 cut(s)	454, 511
HinP1I	GCGC	2 cut(s)	454, 511
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	4 cut(s)	210, 327, 758, 797
HpaII	CCGG	7 cut(s)	324, 402, 617, 722, 777, 801, 816
HphI	GGTGA	2 cut(s)	478, 766
Hpy166II	GTNNAC	4 cut(s)	47, 518, 550, 604
Hpy188I	TCNGA	7 cut(s)	184, 209, 247, 332, 364, 599, 634
Hpy188III	TCNNGA	5 cut(s)	110, 655, 670, 755, 801
Hpy8I	GTNNAC	4 cut(s)	47, 518, 550, 604
Hpy99I	CGWCG	2 cut(s)	156, 484
HpyAV	CCTTC	1 cut(s)	667
HpyCH4III	ACNGT	2 cut(s)	19, 715
HpyCH4IV	ACGT	3 cut(s)	237, 426, 474
HpyCH4V	TGCA	2 cut(s)	120, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 820
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	3 cut(s)	237, 426, 474
Hsp92II	CATG	2 cut(s)	42, 559
HspAI	GCGC	2 cut(s)	454, 511
Kpn2I	TCCGGA	1 cut(s)	800
Ksp22I	TGATCA	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	2 cut(s)	155, 158
LweI	GCATC	2 cut(s)	429, 693
MaeI	CTAG	2 cut(s)	233, 521
MaeII	ACGT	3 cut(s)	237, 426, 474
MaeIII	GTNAC	4 cut(s)	70, 443, 676, 772
MboII	GAAGA	4 cut(s)	377, 380, 753, 825
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	3 cut(s)	102, 404, 718
MhlI	GDGCHC	2 cut(s)	464, 825
MluCI	AATT	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	94, 326, 555
MroI	TCCGGA	1 cut(s)	800
MseI	TTAA	6 cut(s)	51, 273, 398, 413, 471, 698
MspI	CCGG	7 cut(s)	324, 402, 617, 722, 777, 801, 816
MspR9I	CCNGG	4 cut(s)	618, 723, 778, 816
MunI	CAATTG	1 cut(s)	29
MvnI	CGCG	3 cut(s)	456, 501, 513
MwoI	GCNNNNNNNGC	2 cut(s)	34, 820
NciI	CCSGG	4 cut(s)	618, 723, 778, 816
NcoI	CCATGG	1 cut(s)	38
NlaIII	CATG	2 cut(s)	42, 559
NlaIV	GGNNCC	2 cut(s)	36, 720
NmuCI	GTSAC	3 cut(s)	70, 443, 772
NspV	TTCGAA	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	327, 758, 797
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	145, 148
Ple19I	CGATCG	1 cut(s)	612
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	36, 720
PsuI	RGATCY	3 cut(s)	102, 404, 718
PsyI	GACNNNGTC	1 cut(s)	380
PvuI	CGATCG	1 cut(s)	612
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SaqAI	TTAA	6 cut(s)	51, 273, 398, 413, 471, 698
SatI	GCNGC	2 cut(s)	144, 147
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	4 cut(s)	618, 723, 778, 816
SduI	GDGCHC	2 cut(s)	464, 825
SfaNI	GCATC	2 cut(s)	429, 693
SfuI	TTCGAA	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	227, 668
SmoI	CTYRAG	2 cut(s)	227, 668
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	4 cut(s)	269, 456, 501, 513
SspMI	CTAG	2 cut(s)	233, 521
StyD4I	CCNGG	4 cut(s)	616, 721, 776, 814
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	19, 715
TaiI	ACGT	3 cut(s)	240, 429, 477
TaqI	TCGA	6 cut(s)	262, 303, 347, 482, 608, 795
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	327, 758, 797
Tru1I	TTAA	6 cut(s)	51, 273, 398, 413, 471, 698
Tru9I	TTAA	6 cut(s)	51, 273, 398, 413, 471, 698
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	3 cut(s)	70, 443, 772
TseI	GCWGC	2 cut(s)	143, 146
Tsp45I	GTSAC	3 cut(s)	70, 443, 772
TspDTI	ATGAA	2 cut(s)	231, 485
TspGWI	ACGGA	2 cut(s)	695, 834
TspRI	CASTG	1 cut(s)	816
Tth111I	GACNNNGTC	1 cut(s)	380
XspI	CTAG	2 cut(s)	233, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.