Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Reverse (-)

52259405 .. 52263459

Gene Structure 4055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1420800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGAATCCTCATCGATTGTCGGACAACCTGGAGCCCTGGAGCCACCTCCACGGCAAAGTCGTCATGGTTACCGGCGCTTCCTCTGGCCTCGGCCGCGAGTTGTGCTTAGACTTAGCTAAAGCCGGCTGCAGAATCGTAGCCGCCGCTCGCCGCATCGACCGCCTTCAGTCCGTGTGCGATCAAATCAACCAGCTCTCCATCACCGCTCCTTCTTCATCATCTTCTGTTGCTGATAGTGGGACTGGTGGAGGCCCGAGGGCTGTGGCCGTGGAGCTGGATGTCAGCGCCGATGGCCCAGCTATCGAGAAGTCTGTGAACAAGGCTTGGGACGCGTTTGGGCTCATCGATGCCCTTGTTAACAATGCCGGTATTAGAGGTAATGTGAGTTCTGCATTGGACCTGTCTGAGGAGGAATGGAATCATGTTTTCAGGACAAATTTAACGGGTTCCTGGTTGGTATCAAAGTTTGTTGCTATACGCATGCGAGATGCTGATCAGGGAGGGTCAATCGTCAATATATCTTCCATTGCTGGTCTTAATCGTGGATATTTGCCTGGAGCTACAGCATACAATTGTTCAAAGGCTGGTGTAAACACCTTAACAAAGACTATGGCTATGGAGCTGGGGGTACACAAAATCAGAGTGAATGCAATATCACCTGGACTTTTCAGATCGGAAATTACGGAGCGTCTAATGGAAAAAGACTGGCTGCACAATGTGGCTATGAAAACTGCCCCTTTAAGAACATTTGGCACTTCAGATCCAGCATTGACATCGCTAGTTCGATATTTGGTACATGACTCTTCTGAATATGTCTCTGGCAACATTTATATTGTTGATGCAGGAGCCACCTTGCCGGGTGTTCCTATTTTCTCTTCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

296

Amino Acids

31.4

Weight (kDa)

6.38

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	20 - 235	1.3e-47	short chain dehydrogenase
KR	PF08659	22 - 203	7.8e-08	KR domain
adh_short_C2	PF13561	27 - 285	8.2e-42	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	149, 209
AccII	CGCG	2 cut(s)	99, 335
AciI	CCGC	6 cut(s)	97, 144, 147, 154, 163, 207
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	2 cut(s)	94, 267
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	152, 744
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	633, 798
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	582
AjnI	CCWGG	5 cut(s)	30, 38, 452, 556, 661
AluBI	AGCT	6 cut(s)	119, 196, 277, 302, 563, 625
AluI	AGCT	6 cut(s)	119, 196, 277, 302, 563, 625
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	1 cut(s)	758
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	5 cut(s)	88, 94, 253, 267, 295
ApeKI	GCWGC	2 cut(s)	129, 712
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	2 cut(s)	80, 290
AspS9I	GGNCC	3 cut(s)	254, 296, 400
AsuC2I	CCSGG	1 cut(s)	861
AsuHPI	GGTGA	2 cut(s)	196, 651
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	39, 345
BbvI	GCAGC	2 cut(s)	116, 699
BccI	CCATC	2 cut(s)	209, 287
BceAI	ACGGC	2 cut(s)	70, 254
BcgI	CGANNNNNNTGC	2 cut(s)	759, 793
BciT130I	CCWGG	5 cut(s)	32, 40, 454, 558, 663
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	2 cut(s)	130, 564
BfoI	RGCGCY	2 cut(s)	81, 291
BisI	GCNGC	6 cut(s)	97, 130, 144, 147, 154, 713
BlsI	GCNGC	6 cut(s)	98, 131, 145, 148, 155, 714
Bme1390I	CCNGG	6 cut(s)	32, 40, 454, 558, 663, 861
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	254, 296, 400
BmiI	GGNNCC	4 cut(s)	36, 44, 451, 850
BmrFI	CCNGG	6 cut(s)	32, 40, 454, 558, 663, 861
BmsI	GCATC	4 cut(s)	165, 340, 481, 832
BpmI	CTGGAG	3 cut(s)	53, 61, 579
BpuMI	CCSGG	1 cut(s)	861
Bsa29I	ATCGAT	2 cut(s)	16, 348
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	5 cut(s)	38, 52, 91, 257, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	3 cut(s)	74, 125, 368
Bse1I	ACTGG	2 cut(s)	250, 713
Bse3DI	GCAATG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	5 cut(s)	32, 40, 454, 558, 663
BseCI	ATCGAT	2 cut(s)	16, 348
BseDI	CCNNGG	5 cut(s)	38, 52, 91, 257, 270
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	250, 713
BseRI	GAGGAG	1 cut(s)	425
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	116, 699
BseYI	CCCAGC	2 cut(s)	298, 625
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	99, 335
Bsh1285I	CGRYCG	2 cut(s)	97, 163
BshFI	GGCC	5 cut(s)	90, 96, 255, 269, 297
BshVI	ATCGAT	2 cut(s)	16, 348
BsiEI	CGRYCG	2 cut(s)	97, 163
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	4 cut(s)	75, 126, 369, 860
BslFI	GGGAC	2 cut(s)	256, 344
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	823
BsmFI	GGGAC	2 cut(s)	256, 344
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	5 cut(s)	90, 96, 255, 269, 297
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	39, 345
Bsp143I	GATC	4 cut(s)	181, 496, 674, 763
BspACI	CCGC	6 cut(s)	97, 144, 147, 154, 163, 207
BspANI	GGCC	5 cut(s)	90, 96, 255, 269, 297
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	2 cut(s)	16, 348
BspFNI	CGCG	2 cut(s)	99, 335
BspLI	GGNNCC	4 cut(s)	36, 44, 451, 850
BspMAI	CTGCAG	1 cut(s)	134
BspPI	GGATC	1 cut(s)	758
BsrBI	CCGCTC	2 cut(s)	149, 209
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	3 cut(s)	74, 125, 368
BsrI	ACTGG	2 cut(s)	250, 713
BssAI	RCCGGY	3 cut(s)	74, 125, 368
BssECI	CCNNGG	5 cut(s)	38, 52, 91, 257, 270
BssMI	GATC	4 cut(s)	181, 496, 674, 763
Bst2UI	CCWGG	5 cut(s)	32, 40, 454, 558, 663
Bst6I	CTCTTC	2 cut(s)	811, 883
BstC8I	GCNNGC	3 cut(s)	127, 151, 485
BstDEI	CTNAG	3 cut(s)	109, 115, 408
BstDSI	CCRYGG	2 cut(s)	52, 270
BstEII	GGTNACC	1 cut(s)	70
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	2 cut(s)	99, 335
BstH2I	RGCGCY	2 cut(s)	81, 291
BstHHI	GCGC	2 cut(s)	80, 290
BstKTI	GATC	4 cut(s)	184, 499, 677, 766
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	4 cut(s)	181, 496, 674, 763
BstMCI	CGRYCG	2 cut(s)	97, 163
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 105, 162, 294, 332
BstNI	CCWGG	5 cut(s)	32, 40, 454, 558, 663
BstNSI	RCATGY	1 cut(s)	487
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	6 cut(s)	30, 38, 452, 556, 661, 859
BstSFI	CTRYAG	2 cut(s)	130, 564
BstUI	CGCG	2 cut(s)	99, 335
BstV1I	GCAGC	2 cut(s)	116, 699
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BstZI	CGGCCG	1 cut(s)	94
Bsu15I	ATCGAT	2 cut(s)	16, 348
BsuRI	GGCC	5 cut(s)	90, 96, 255, 269, 297
BsuTUI	ATCGAT	2 cut(s)	16, 348
BtgI	CCRYGG	2 cut(s)	52, 270
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	127, 151, 485
CfoI	GCGC	2 cut(s)	80, 290
Cfr10I	RCCGGY	3 cut(s)	74, 125, 368
Cfr13I	GGNCC	3 cut(s)	254, 296, 400
ClaI	ATCGAT	2 cut(s)	16, 348
CseI	GACGC	2 cut(s)	341, 680
Csp6I	GTAC	2 cut(s)	632, 797
CviAII	CATG	4 cut(s)	67, 425, 484, 800
CviQI	GTAC	2 cut(s)	632, 797
DdeI	CTNAG	3 cut(s)	109, 115, 408
DpnI	GATC	4 cut(s)	183, 498, 676, 765
DpnII	GATC	4 cut(s)	181, 496, 674, 763
DraIII	CACNNNGTG	1 cut(s)	721
EaeI	YGGCCR	2 cut(s)	94, 267
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	811, 883
EarI	CTCTTC	2 cut(s)	811, 883
EclXI	CGGCCG	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	39, 345
Eco47I	GGWCC	1 cut(s)	400
Eco52I	CGGCCG	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	152, 744
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO65I	GGTNACC	1 cut(s)	70
EcoRII	CCWGG	5 cut(s)	30, 38, 452, 556, 661
EcoT38I	GRGCYC	2 cut(s)	39, 345
FaeI	CATG	4 cut(s)	70, 428, 487, 803
FaqI	GGGAC	2 cut(s)	256, 344
FatI	CATG	4 cut(s)	66, 424, 483, 799
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	6 cut(s)	97, 130, 144, 147, 154, 713
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	39, 345
Fsp4HI	GCNGC	6 cut(s)	97, 130, 144, 147, 154, 713
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	2 cut(s)	79, 289
GluI	GCNGC	6 cut(s)	97, 130, 144, 147, 154, 713
GsaI	CCCAGC	2 cut(s)	302, 629
GsuI	CTGGAG	3 cut(s)	53, 61, 579
HaeII	RGCGCY	2 cut(s)	81, 291
HaeIII	GGCC	5 cut(s)	90, 96, 255, 269, 297
HapII	CCGG	4 cut(s)	75, 126, 369, 860
HgaI	GACGC	2 cut(s)	341, 680
HhaI	GCGC	2 cut(s)	80, 290
Hin1II	CATG	4 cut(s)	70, 428, 487, 803
Hin6I	GCGC	2 cut(s)	78, 288
HinP1I	GCGC	2 cut(s)	78, 288
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	7, 135, 421, 803
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	4 cut(s)	75, 126, 369, 860
HphI	GGTGA	2 cut(s)	196, 651
Hpy166II	GTNNAC	4 cut(s)	319, 361, 595, 634
Hpy188I	TCNGA	8 cut(s)	25, 409, 644, 674, 679, 763, 811, 887
Hpy188III	TCNNGA	2 cut(s)	307, 433
Hpy8I	GTNNAC	4 cut(s)	319, 361, 595, 634
HpyAV	CCTTC	2 cut(s)	176, 222
HpyCH4V	TGCA	5 cut(s)	132, 395, 653, 715, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 105, 162, 294, 332
HpyF3I	CTNAG	3 cut(s)	109, 115, 408
Hsp92II	CATG	4 cut(s)	70, 428, 487, 803
HspAI	GCGC	2 cut(s)	78, 288
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	181, 496, 674, 763
LmnI	GCTCC	8 cut(s)	34, 42, 214, 274, 560, 622, 688, 848
Lsp1109I	GCAGC	2 cut(s)	116, 699
LweI	GCATC	4 cut(s)	165, 340, 481, 832
MaeI	CTAG	1 cut(s)	782
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	183, 498, 676, 765
MbiI	CCGCTC	2 cut(s)	149, 209
MboI	GATC	4 cut(s)	181, 496, 674, 763
MboII	GAAGA	5 cut(s)	207, 216, 516, 798, 870
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	2 cut(s)	39, 345
MluCI	AATT	3 cut(s)	439, 574, 681
MluI	ACGCGT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	797
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	5 cut(s)	360, 443, 540, 602, 743
MspI	CCGG	4 cut(s)	75, 126, 369, 860
MspR9I	CCNGG	6 cut(s)	32, 40, 454, 558, 663, 861
MunI	CAATTG	1 cut(s)	574
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	5 cut(s)	32, 40, 454, 558, 663
MvnI	CGCG	2 cut(s)	99, 335
MwoI	GCNNNNNNNGC	5 cut(s)	96, 105, 162, 294, 332
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	861
NdeII	GATC	4 cut(s)	181, 496, 674, 763
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	4 cut(s)	70, 428, 487, 803
NlaIV	GGNNCC	4 cut(s)	36, 44, 451, 850
NmeAIII	GCCGAG	1 cut(s)	72
NspI	RCATGY	1 cut(s)	487
PaeI	GCATGC	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	655
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	7, 135, 421
PkrI	GCNGC	6 cut(s)	98, 131, 145, 148, 155, 714
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
Psp6I	CCWGG	5 cut(s)	30, 38, 452, 556, 661
PspEI	GGTNACC	1 cut(s)	70
PspFI	CCCAGC	2 cut(s)	298, 625
PspGI	CCWGG	5 cut(s)	30, 38, 452, 556, 661
PspN4I	GGNNCC	4 cut(s)	36, 44, 451, 850
PspPI	GGNCC	3 cut(s)	254, 296, 400
PsrI	GAACNNNNNNTAC	2 cut(s)	373, 405
PstI	CTGCAG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	2 cut(s)	633, 798
RsaNI	GTAC	2 cut(s)	632, 797
SaqAI	TTAA	5 cut(s)	360, 443, 540, 602, 743
SatI	GCNGC	6 cut(s)	97, 130, 144, 147, 154, 713
Sau3AI	GATC	4 cut(s)	181, 496, 674, 763
Sau96I	GGNCC	3 cut(s)	254, 296, 400
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	6 cut(s)	32, 40, 454, 558, 663, 861
SduI	GDGCHC	2 cut(s)	39, 345
SfaNI	GCATC	4 cut(s)	165, 340, 481, 832
SfcI	CTRYAG	2 cut(s)	130, 564
SinI	GGWCC	1 cut(s)	400
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	3 cut(s)	439, 574, 681
SsiI	CCGC	6 cut(s)	97, 144, 147, 154, 163, 207
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	6 cut(s)	30, 38, 452, 556, 661, 859
TaqI	TCGA	5 cut(s)	16, 159, 306, 348, 787
TasI	AATT	3 cut(s)	439, 574, 681
TauI	GCSGC	4 cut(s)	99, 146, 149, 156
TfiI	GAWTC	3 cut(s)	7, 135, 421
Tru1I	TTAA	5 cut(s)	360, 443, 540, 602, 743
Tru9I	TTAA	5 cut(s)	360, 443, 540, 602, 743
TseI	GCWGC	2 cut(s)	129, 712
TspDTI	ATGAA	2 cut(s)	207, 743
TspGWI	ACGGA	2 cut(s)	163, 701
VpaK11BI	GGWCC	1 cut(s)	400
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	487
XspI	CTAG	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.