FvH4_5g32470

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
23432417 .. 23437997
5581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32470.t1

Sequence Viewer

Length: 858 bp
ATGGCGAAGACCCAAGTCTCAGACCACCTGGAGCCATGGCACGACCTCCCCGACAAGGTCGTCATGGTCACCGGCGCCTCTTCCGGCCTCGGCCATGACTTCTGTCTCGACTTGGCTAAAGCCGGCTGCCGGATTGTCGCCGCCGCACGCCGCGTCGATCGCCTCCACTCTATCTGTGACGCAATCAACAAACTTTCCACCACCGCGCCGCCTCAGACGAGGGCCTTCGCGGTTGAGCTCGACGTCAGCGCCGACGGCTCTGCTATTCAGAAGTCTGTGCAAAAGGCTTGGGATGCCTTTGGTCGCATCGACGCCCTCATCAACAACGCCGGTGTTAGAGGTACTGTGGCATCTGCATTGGAATTGTCTGAGGAGGAATGGAACAACACGTTAAAGACAAACTTGACAGGCACCTGGTTGGTATCAAAATATGTTTCCCTATGCATGCGTAATGCAGATAAGGGAGGATCAATCATTAATATATCTTCCATTGCTGGTCTTAATCGTGGATATTTGCCTGGAGGTCCAGCATACAATTGCTCAAAGGGTGCCGTAAACACCTTGTCCAAGGTCATGGCTTTGGAGTTGGGGGCTCACAAGATCAGAGTGAATGCAATATCACCTGGGCTGTTCAGATCTGAAATTACAGAAGGTCTTATGCAAAAAGATTGGCTACACAATGTGGCTATGAGAACTGTCCCTTTGAGAACATTTGGCACTTCAGATCCAGCATTGACATCACTAGTTCGTTATTTGATACATGACTCCTCTGAGTATGTCTCGGGAAATATCTACATTGTAGACGCAGGAGCCACTTTGCCAGGGAGGTTTGGGGTTGTGGATGTTGCCCATCACTGA

Protein Analysis

286

Amino Acids

30.55

Weight (kDa)

7.71

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 221 4.4e-51 short chain dehydrogenase
KR PF08659 21 - 168 1.1e-08 KR domain
adh_short_C2 PF13561 25 - 272 2.8e-45 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AatII GACGTC 1 cut(s) 246
AccB1I GGYRCC 3 cut(s) 74, 410, 548
AccI GTMKAC 1 cut(s) 801
AccII CGCG 3 cut(s) 153, 206, 230
AciI CCGC 6 cut(s) 141, 144, 151, 204, 209, 230
AclWI GGATC 2 cut(s) 475, 719
AcoI YGGCCR 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 705
AcyI GRCGYC 3 cut(s) 75, 243, 312
AdeI CACNNNGTG 1 cut(s) 682
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 2 cut(s) 55, 129
AflIII ACRYGT 1 cut(s) 387
AhlI ACTAGT 1 cut(s) 742
AjnI CCWGG 5 cut(s) 27, 413, 517, 622, 820
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 22, 110, 784
AlwI GGATC 2 cut(s) 475, 719
Ama87I CYCGRG 1 cut(s) 781
AoxI GGCC 3 cut(s) 85, 91, 222
ApeKI GCWGC 1 cut(s) 126
AseI ATTAAT 1 cut(s) 477
AspLEI GCGC 3 cut(s) 77, 208, 251
AspS9I GGNCC 2 cut(s) 222, 524
AsuHPI GGTGA 2 cut(s) 61, 612
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 1 cut(s) 524
BanI GGYRCC 3 cut(s) 74, 410, 548
BanII GRGCYC 2 cut(s) 240, 595
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 113
BceAI ACGGC 2 cut(s) 271, 536
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 5 cut(s) 29, 415, 519, 624, 822
BcoDI GTCTC 3 cut(s) 22, 110, 784
BcuI ACTAGT 1 cut(s) 742
BfaI CTAG 1 cut(s) 743
BfoI RGCGCY 2 cut(s) 78, 252
BglII AGATCT 1 cut(s) 635
BisI GCNGC 5 cut(s) 127, 141, 144, 151, 209
BlsI GCNGC 5 cut(s) 128, 142, 145, 152, 210
Bme1390I CCNGG 5 cut(s) 29, 415, 519, 624, 822
Bme18I GGWCC 1 cut(s) 524
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 2 cut(s) 222, 524
BmiI GGNNCC 5 cut(s) 33, 76, 412, 550, 811
BmrFI CCNGG 5 cut(s) 29, 415, 519, 624, 822
BmsI GCATC 3 cut(s) 283, 315, 359
BoxI GACNNNNGTC 2 cut(s) 14, 102
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 764, 796
BpmI CTGGAG 2 cut(s) 50, 540
BsaHI GRCGYC 3 cut(s) 75, 243, 312
BsaJI CCNNGG 5 cut(s) 35, 88, 567, 623, 821
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 129
Bse118I RCCGGY 3 cut(s) 71, 122, 329
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 5 cut(s) 29, 415, 519, 624, 822
BseDI CCNNGG 5 cut(s) 35, 88, 567, 623, 821
BseGI GGATG 2 cut(s) 298, 847
BseLI CCNNNNNNNGG 2 cut(s) 55, 129
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 4 cut(s) 33, 227, 360, 762
BseRI GAGGAG 2 cut(s) 386, 757
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 3 cut(s) 153, 206, 230
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 3 cut(s) 87, 93, 224
BshNI GGYRCC 3 cut(s) 74, 410, 548
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 5 cut(s) 72, 84, 123, 130, 330
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 2 cut(s) 55, 129
BsmAI GTCTC 3 cut(s) 22, 110, 784
BsmFI GGGAC 1 cut(s) 683
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 3 cut(s) 87, 93, 224
BsoBI CYCGRG 1 cut(s) 781
Bsp1286I GDGCHC 2 cut(s) 240, 595
Bsp143I GATC 5 cut(s) 157, 467, 600, 635, 724
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 6 cut(s) 141, 144, 151, 204, 209, 230
BspANI GGCC 3 cut(s) 87, 93, 224
BspCNI CTCAG 4 cut(s) 32, 226, 361, 763
BspFNI CGCG 3 cut(s) 153, 206, 230
BspLI GGNNCC 5 cut(s) 33, 76, 412, 550, 811
BspPI GGATC 2 cut(s) 475, 719
BspT107I GGYRCC 3 cut(s) 74, 410, 548
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 3 cut(s) 71, 122, 329
BssAI RCCGGY 3 cut(s) 71, 122, 329
BssECI CCNNGG 5 cut(s) 35, 88, 567, 623, 821
BssMI GATC 5 cut(s) 157, 467, 600, 635, 724
BssNI GRCGYC 3 cut(s) 75, 243, 312
BssT1I CCWWGG 2 cut(s) 35, 567
Bst2UI CCWGG 5 cut(s) 29, 415, 519, 624, 822
Bst4CI ACNGT 2 cut(s) 346, 697
Bst6I CTCTTC 1 cut(s) 85
BstACI GRCGYC 3 cut(s) 75, 243, 312
BstC8I GCNNGC 3 cut(s) 124, 148, 446
BstDEI CTNAG 4 cut(s) 19, 213, 369, 771
BstDSI CCRYGG 1 cut(s) 35
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 2 cut(s) 298, 847
BstFNI CGCG 3 cut(s) 153, 206, 230
BstH2I RGCGCY 2 cut(s) 78, 252
BstHHI GCGC 3 cut(s) 77, 208, 251
BstKTI GATC 5 cut(s) 160, 470, 603, 638, 727
BstMAI GTCTC 3 cut(s) 22, 110, 784
BstMBI GATC 5 cut(s) 157, 467, 600, 635, 724
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 159, 255, 293
BstNI CCWGG 5 cut(s) 29, 415, 519, 624, 822
BstNSI RCATGY 1 cut(s) 448
BstPAI GACNNNNGTC 2 cut(s) 14, 102
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 5 cut(s) 27, 413, 517, 622, 820
BstUI CGCG 3 cut(s) 153, 206, 230
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 635, 724
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 2 cut(s) 635, 724
BsuRI GGCC 3 cut(s) 87, 93, 224
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 298, 847
BtsIMutI CAGTG 1 cut(s) 853
Cac8I GCNNGC 3 cut(s) 124, 148, 446
CfoI GCGC 3 cut(s) 77, 208, 251
Cfr10I RCCGGY 3 cut(s) 71, 122, 329
Cfr13I GGNCC 2 cut(s) 222, 524
CseI GACGC 4 cut(s) 142, 188, 320, 812
CsiI ACCWGGT 1 cut(s) 413
Csp6I GTAC 1 cut(s) 342
CviAII CATG 6 cut(s) 36, 64, 95, 445, 574, 761
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 4 cut(s) 19, 213, 369, 771
DinI GGCGCC 1 cut(s) 76
DpnI GATC 5 cut(s) 159, 469, 602, 637, 726
DpnII GATC 5 cut(s) 157, 467, 600, 635, 724
DraIII CACNNNGTG 1 cut(s) 682
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 35, 567
Eco24I GRGCYC 2 cut(s) 240, 595
Eco47I GGWCC 1 cut(s) 524
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 705
Eco88I CYCGRG 1 cut(s) 781
Eco91I GGTNACC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 222
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 5 cut(s) 27, 413, 517, 622, 820
EcoT14I CCWWGG 2 cut(s) 35, 567
EcoT22I ATGCAT 1 cut(s) 446
EcoT38I GRGCYC 2 cut(s) 240, 595
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
ErhI CCWWGG 2 cut(s) 35, 567
FaeI CATG 6 cut(s) 39, 67, 98, 448, 577, 764
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 683
FatI CATG 6 cut(s) 35, 63, 94, 444, 573, 760
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 5 cut(s) 127, 141, 144, 151, 209
FokI GGATG 2 cut(s) 305, 854
FriOI GRGCYC 2 cut(s) 240, 595
Fsp4HI GCNGC 5 cut(s) 127, 141, 144, 151, 209
FspBI CTAG 1 cut(s) 743
GlaI GCGC 3 cut(s) 76, 207, 250
GluI GCNGC 5 cut(s) 127, 141, 144, 151, 209
GsuI CTGGAG 2 cut(s) 50, 540
HaeII RGCGCY 2 cut(s) 78, 252
HaeIII GGCC 3 cut(s) 87, 93, 224
HapII CCGG 5 cut(s) 72, 84, 123, 130, 330
HgaI GACGC 4 cut(s) 142, 188, 320, 812
HhaI GCGC 3 cut(s) 77, 208, 251
Hin1I GRCGYC 3 cut(s) 75, 243, 312
Hin1II CATG 6 cut(s) 39, 67, 98, 448, 577, 764
Hin6I GCGC 3 cut(s) 75, 206, 249
HinP1I GCGC 3 cut(s) 75, 206, 249
HinfI GANTC 1 cut(s) 764
HpaII CCGG 5 cut(s) 72, 84, 123, 130, 330
HphI GGTGA 2 cut(s) 61, 612
Hpy166II GTNNAC 2 cut(s) 556, 802
Hpy188I TCNGA 9 cut(s) 22, 216, 270, 370, 605, 635, 640, 724, 772
Hpy188III TCNNGA 2 cut(s) 107, 783
Hpy8I GTNNAC 2 cut(s) 556, 802
Hpy99I CGWCG 4 cut(s) 158, 245, 257, 314
HpyAV CCTTC 2 cut(s) 235, 644
HpyCH4III ACNGT 2 cut(s) 346, 697
HpyCH4IV ACGT 2 cut(s) 243, 389
HpyCH4V TGCA 6 cut(s) 280, 356, 444, 455, 614, 661
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 255, 293
HpyF3I CTNAG 4 cut(s) 19, 213, 369, 771
HpySE526I ACGT 2 cut(s) 243, 389
Hsp92I GRCGYC 3 cut(s) 75, 243, 312
Hsp92II CATG 6 cut(s) 39, 67, 98, 448, 577, 764
HspAI GCGC 3 cut(s) 75, 206, 249
KasI GGCGCC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 5 cut(s) 157, 467, 600, 635, 724
LmnI GCTCC 2 cut(s) 31, 809
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 3 cut(s) 283, 315, 359
MabI ACCWGGT 1 cut(s) 413
MaeI CTAG 1 cut(s) 743
MaeII ACGT 2 cut(s) 243, 389
MaeIII GTNAC 2 cut(s) 67, 176
MalI GATC 5 cut(s) 159, 469, 602, 637, 726
MboI GATC 5 cut(s) 157, 467, 600, 635, 724
MboII GAAGA 3 cut(s) 19, 72, 477
MfeI CAATTG 1 cut(s) 535
MflI RGATCY 2 cut(s) 635, 724
MhlI GDGCHC 2 cut(s) 240, 595
MluCI AATT 3 cut(s) 362, 535, 642
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 1 cut(s) 758
Mph1103I ATGCAT 1 cut(s) 446
MroNI GCCGGC 1 cut(s) 122
MseI TTAA 3 cut(s) 392, 477, 501
MspI CCGG 5 cut(s) 72, 84, 123, 130, 330
MspR9I CCNGG 5 cut(s) 29, 415, 519, 624, 822
MunI CAATTG 1 cut(s) 535
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 5 cut(s) 29, 415, 519, 624, 822
MvnI CGCG 3 cut(s) 153, 206, 230
MwoI GCNNNNNNNGC 3 cut(s) 159, 255, 293
NaeI GCCGGC 1 cut(s) 124
NarI GGCGCC 1 cut(s) 75
NcoI CCATGG 1 cut(s) 35
NdeII GATC 5 cut(s) 157, 467, 600, 635, 724
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 6 cut(s) 39, 67, 98, 448, 577, 764
NlaIV GGNNCC 5 cut(s) 33, 76, 412, 550, 811
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 67, 176
NsiI ATGCAT 1 cut(s) 446
NspI RCATGY 1 cut(s) 448
PaeI GCATGC 1 cut(s) 448
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 249
PctI GAATGC 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 5 cut(s) 128, 142, 145, 152, 210
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 1 cut(s) 758
PluTI GGCGCC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 758
PshAI GACNNNNGTC 2 cut(s) 14, 102
PshBI ATTAAT 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 5 cut(s) 27, 413, 517, 622, 820
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 5 cut(s) 27, 413, 517, 622, 820
PspN4I GGNNCC 5 cut(s) 33, 76, 412, 550, 811
PspPI GGNCC 2 cut(s) 222, 524
PsuI RGATCY 2 cut(s) 635, 724
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 392, 477, 501
SatI GCNGC 5 cut(s) 127, 141, 144, 151, 209
Sau3AI GATC 5 cut(s) 157, 467, 600, 635, 724
Sau96I GGNCC 2 cut(s) 222, 524
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 5 cut(s) 29, 415, 519, 624, 822
SduI GDGCHC 2 cut(s) 240, 595
SexAI ACCWGGT 1 cut(s) 413
SfaNI GCATC 3 cut(s) 283, 315, 359
SfoI GGCGCC 1 cut(s) 76
SgrAI CRCCGGYG 2 cut(s) 71, 329
SinI GGWCC 1 cut(s) 524
SpeI ACTAGT 1 cut(s) 742
SphI GCATGC 1 cut(s) 448
Sse9I AATT 3 cut(s) 362, 535, 642
SsiI CCGC 6 cut(s) 141, 144, 151, 204, 209, 230
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 5 cut(s) 27, 413, 517, 622, 820
StyI CCWWGG 2 cut(s) 35, 567
TaaI ACNGT 2 cut(s) 346, 697
TaiI ACGT 2 cut(s) 246, 392
TaqI TCGA 4 cut(s) 108, 156, 240, 309
TasI AATT 3 cut(s) 362, 535, 642
TauI GCSGC 4 cut(s) 143, 146, 153, 211
Tru1I TTAA 3 cut(s) 392, 477, 501
Tru9I TTAA 3 cut(s) 392, 477, 501
TseFI GTSAC 2 cut(s) 67, 176
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 2 cut(s) 67, 176
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 524
VspI ATTAAT 1 cut(s) 477
XceI RCATGY 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 1 cut(s) 743
ZraI GACGTC 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.