Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Reverse (-)

23811187 .. 23814095

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0254900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGCCGCATTTCAACTCCAACATCCTCATATTAATTCCCAAGCGAGAAGACGCTGAAAGCATCTCAGACTTTCGTCCAATTGCACTTGCCAACTTCGTGTTCAAGATTATCACAAGAATTGTGGTTGATAGGCTTGGTCCAATAGCTTCTCGTATCATCTCCCCTAACCAAAGCGCCTTTATTAGAGGAAGGTCCATTGTCGATCCCATTGTGTTGACCTCAGAATGTGTGAATCTCCTTGACCAGAAATGCAAATATGGGAATTTAGCTATTAAATTTGATATCCGCAAAGCATTTGACACTTTGGATTGGAATTTTCTTCTTCGTGTCCTCGGTGCCTTTGGGTTTGACGCCGCTTTCGTAAGCTACATTTACACTATTTTGCAATCTGCATATCTATCTGTCAGTGTTAATGGGCAGGCCAATGGATACTTTACATGCTCCAGGGGTGTCCGTCAAGGCGATCCTTTATCTCCATTATTGTTTTGCCTAGCGGAAGAAGTTCTAAGCCGTGGCCTTTCTTCTTTGGTTAATAGAAGGAAGATTAGGACAATTGCAGTGCCATCAAGTGTATCCCCCCCATCCCATGTGTTGTTTGCGGATGATGTTATGATATGCTTTGCCGAGGCAAACCAGAACTTGTGGCTTACTTGGAATACGACTGGGACAACTTCCCTTCATTTATCTCGGTGTTCCCATTTTTATTGGGCATCTTGTTTGCGGATGATGTTATGGTATTTCTTCAAGATATGCTTTGCCGAGGCAAACCAGAACTTGTGGCTTACTTGGAATACGACTGGGACAACTTCCCTTCATTTATCTCGGTGTTCCCATTTTTATTGGGCATCCGGAATCCTAGCATTTGGTTCCAATTGTAGACAAAGTGAGGTGCAAGCTGAGCTCCTGGAAAGCTTCCACATCTATGAATGGCCACAGTATCTTCTAAATAGAGTACAGGGATGGATTAGAAATTTCTTTTGGAATGGTGATCCAATCAAGAGTGGGTCTGCCCTAGTAGCTTGGAGCACAGTTTGCTCTCCAAAATCTCAAGGAGGGTTGGGTTTAAAGAATCTTTTTGCATTGAATAGATCATTGTTATTAAAACGCTATTGGGAGGTGGCTTCAAAGGCGTCTACATCTGCAAGGTTCCTTCATGATCGCTTTCTGCAAGTGGGTTTGCACCCTTGTTCGTACTATAAGAAATCAGCAATATGGCTTGGTTTAAAAAAATTATGGCCGATGCTCCTTGTGAGGGTGCAATGGATCCTGGGAGATGGTTCTACAATAAGGTTTTGGAAGGATAAATGGTTCGGTGAGGAATTAATTCACTCCACAGATTATGAAGAAGAAGTAAGGAAGCTCCTAAATGACAAGGTCTTTCCCCAAGTTGCCCAAGCTATCAGGACAGTCCCAATATCGTCTGAACTTGCCCCAGACCAGCTGCTCTGGACTGAGACATCATCTGGCACTTTGTCATCCAAGGAGGAATACCAGGTTTTGTCTCCTCCCATACCAGCACCTCCTTGGTGTAAGCGGATTTGGCATCAGGCCATTCAGCCACGAAAGAGCATGGTAGCATGGAAAACCTTACTTAATAGAGTTTCTACAGATGAGCGACTTCAGCGTCGTGGTACCAAGCTCTGTTCAAGATGTTATCTTTGCCGGAGACATACTGAAACTACTAACCACTTATTTCTTGAGTGTGTGGTGGCTGCGTCATCTTTGGCTTGGCTCCAGCAAATGTTCAGGCTTCATATTTCTTCAAGTACATCACTGCATGACCTGTTTCTTGATGCTACCCTCTCTACGCTTAATCAATCATCAAAATTGCTATGGTTTATTTCTATCTGCAATTTACTTTGGTGCATGTGGAGTGAACGTAGTAAAAGAAAGTTTGAAGGTGGTGAGTGTTGCCCCTCTAGGTTCAAACAATTTTTCCTATTGTCTCTAAAAGAATCAGCAGGCTTAGCTTTTGTCTCCGCATCTTCTACCTCGAGTCAGGTTCCCATCTTTGGCTACCTGGGCATTTCACCTCTTCTTCCCTCGGCACCCCGCTTCACTCCTGTGATTTGGCAGCCCCCCCCCCAGGAGGCTGGTTTAAAGCTAACTCTAATGGTTCTTACCGAGGTCCCTTATGCTATAGATGCAGAGTTATTGGCTGTGATTGAGGTAATTAAGGTGGCAAAAGAGAGAGACTGGTTTCCTTTGTGGGTAGAAACAGACTCCATGTTGGCATTACAGTACTTTAAAAAGCCAGGCTTGGCACCTTGGAGGCTTCGGGTGAAATGGATGAATAACCTTGCATCCATTAGCCAGTTTCAGGTACACATCTCTCATGTCTTCAGGGAGGGGAATCAAGTCGCAGATAAGCTAGCTAACCACGGTGCCGTGAATAGTGGTTCAGTTTGGTGGGATTCAATCCCTCAATTCCTGTTTAGTTCTTTTGGGCATGATTTTTCTGCTCGTACTACTTACCGGTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

828

Amino Acids

94.49

Weight (kDa)

9.28

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	12 - 212	5.5e-27	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	492 - 572	2e-19	zinc-binding in reverse transcriptase
RVT_3	PF13456	716 - 794	2e-08	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1623
Acc65I	GGTACC	1 cut(s)	1631
AccB1I	GGYRCC	5 cut(s)	335, 1631, 2047, 2263, 2384
AccI	GTMKAC	2 cut(s)	877, 1133
AccIII	TCCGGA	1 cut(s)	848
AciI	CCGC	9 cut(s)	5, 286, 354, 494, 599, 721, 1534, 1980, 2053
AclWI	GGATC	5 cut(s)	197, 458, 983, 1258, 1271
AcoI	YGGCCR	2 cut(s)	929, 1235
AcsI	RAATTY	4 cut(s)	262, 275, 313, 970
AcuI	CTGAAG	2 cut(s)	1604, 2326
AcyI	GRCGYC	2 cut(s)	351, 1130
AfaI	GTAC	7 cut(s)	954, 1193, 1633, 1768, 2243, 2325, 2467
AfiI	CCNNNNNNNGG	5 cut(s)	1252, 2012, 2086, 2089, 2320
AgeI	ACCGGT	1 cut(s)	2475
AjnI	CCWGG	7 cut(s)	443, 903, 1266, 1491, 2019, 2085, 2254
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 961, 993
AleI	CACNNNNGTG	1 cut(s)	2063
AloI	GAACNNNNNNTCC	2 cut(s)	1292, 1324
Alw21I	GWGCWC	2 cut(s)	903, 1028
Alw26I	GTCTC	6 cut(s)	1448, 1506, 1660, 1950, 1981, 2187
AlwI	GGATC	5 cut(s)	197, 458, 983, 1258, 1271
Ama87I	CYCGRG	1 cut(s)	1993
Aor13HI	TCCGGA	1 cut(s)	848
AoxI	GGCC	5 cut(s)	420, 514, 929, 1235, 1548
ApeKI	GCWGC	3 cut(s)	1441, 1712, 2074
ApoI	RAATTY	4 cut(s)	262, 275, 313, 970
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AseI	ATTAAT	2 cut(s)	32, 1322
AsiGI	ACCGGT	1 cut(s)	2475
Asp700I	GAANNNNTTC	2 cut(s)	501, 1323
Asp718I	GGTACC	1 cut(s)	1631
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	137, 192, 2128
AsuHPI	GGTGA	5 cut(s)	998, 1325, 1916, 2022, 2293
AsuNHI	GCTAGC	1 cut(s)	2371
AvaI	CYCGRG	1 cut(s)	1993
AvaII	GGWCC	3 cut(s)	137, 192, 2128
BalI	TGGCCA	1 cut(s)	931
BamHI	GGATCC	1 cut(s)	1263
BanI	GGYRCC	5 cut(s)	335, 1631, 2047, 2263, 2384
BanII	GRGCYC	1 cut(s)	903
BbsI	GAAGAC	2 cut(s)	54, 2332
Bbv12I	GWGCWC	2 cut(s)	903, 1028
BbvI	GCAGC	3 cut(s)	1428, 1699, 2086
BccI	CCATC	5 cut(s)	571, 589, 954, 1268, 2015
BceAI	ACGGC	2 cut(s)	495, 2372
BciT130I	CCWGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
BciVI	GTATCC	2 cut(s)	422, 583
BcoDI	GTCTC	6 cut(s)	1448, 1506, 1660, 1950, 1981, 2187
BfaI	CTAG	5 cut(s)	491, 857, 1013, 1920, 2372
BfmI	CTRYAG	2 cut(s)	1605, 2139
BfoI	RGCGCY	1 cut(s)	177
BfuI	GTATCC	2 cut(s)	422, 583
BisI	GCNGC	5 cut(s)	5, 354, 1442, 1713, 2075
BlpI	GCTNAGC	2 cut(s)	897, 1966
BlsI	GCNGC	5 cut(s)	6, 355, 1443, 1714, 2076
BmcAI	AGTACT	1 cut(s)	2243
Bme1390I	CCNGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
Bme18I	GGWCC	3 cut(s)	137, 192, 2128
BmeT110I	CYCGRG	1 cut(s)	1993
BmgT120I	GGNCC	3 cut(s)	137, 192, 2128
BmrFI	CCNGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
BmrI	ACTGGG	2 cut(s)	672, 807
BmsI	GCATC	9 cut(s)	69, 719, 854, 1230, 1552, 1783, 1991, 2134, 2312
BmtI	GCTAGC	1 cut(s)	2375
BmuI	ACTGGG	2 cut(s)	672, 807
BoxI	GACNNNNGTC	1 cut(s)	72
BpiI	GAAGAC	2 cut(s)	54, 2332
BpmI	CTGGAG	2 cut(s)	427, 1718
Bpu1102I	GCTNAGC	2 cut(s)	897, 1966
BpuEI	CTTGAG	2 cut(s)	1032, 1718
BsaHI	GRCGYC	2 cut(s)	351, 1130
BsaWI	WCCGGW	2 cut(s)	848, 2475
BsaXI	ACNNNNNCTCC	2 cut(s)	1864, 1894
Bsc4I	CCNNNNNNNGG	5 cut(s)	1252, 2012, 2086, 2089, 2320
Bse118I	RCCGGY	1 cut(s)	2475
Bse1I	ACTGG	4 cut(s)	667, 802, 2201, 2314
Bse3DI	GCAATG	1 cut(s)	1265
BseAI	TCCGGA	1 cut(s)	848
BseBI	CCWGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
BseGI	GGATG	9 cut(s)	21, 581, 607, 729, 845, 965, 1475, 2295, 2303
BseLI	CCNNNNNNNGG	5 cut(s)	1252, 2012, 2086, 2089, 2320
BseMI	GCAATG	1 cut(s)	1265
BseMII	CTCAG	4 cut(s)	78, 234, 888, 1443
BseNI	ACTGG	4 cut(s)	667, 802, 2201, 2314
BseRI	GAGGAG	1 cut(s)	1494
BseXI	GCAGC	3 cut(s)	1428, 1699, 2086
BshFI	GGCC	5 cut(s)	422, 516, 931, 1237, 1550
BshNI	GGYRCC	5 cut(s)	335, 1631, 2047, 2263, 2384
BshTI	ACCGGT	1 cut(s)	2475
BsiHKAI	GWGCWC	2 cut(s)	903, 1028
BsiHKCI	CYCGRG	1 cut(s)	1993
BsiSI	CCGG	3 cut(s)	849, 1663, 2476
BslFI	GGGAC	4 cut(s)	679, 814, 1394, 2114
BslI	CCNNNNNNNGG	5 cut(s)	1252, 2012, 2086, 2089, 2320
BsmAI	GTCTC	6 cut(s)	1448, 1506, 1660, 1950, 1981, 2187
BsmFI	GGGAC	4 cut(s)	679, 814, 1394, 2114
BsnI	GGCC	5 cut(s)	422, 516, 931, 1237, 1550
BsoBI	CYCGRG	1 cut(s)	1993
Bsp1286I	GDGCHC	2 cut(s)	903, 1028
Bsp13I	TCCGGA	1 cut(s)	848
Bsp143I	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
Bsp1720I	GCTNAGC	2 cut(s)	897, 1966
BspACI	CCGC	9 cut(s)	5, 286, 354, 494, 599, 721, 1534, 1980, 2053
BspANI	GGCC	5 cut(s)	422, 516, 931, 1237, 1550
BspCNI	CTCAG	4 cut(s)	77, 233, 889, 1444
BspEI	TCCGGA	1 cut(s)	848
BspHI	TCATGA	1 cut(s)	1153
BspOI	GCTAGC	1 cut(s)	2375
BspPI	GGATC	5 cut(s)	197, 458, 983, 1258, 1271
BspT107I	GGYRCC	5 cut(s)	335, 1631, 2047, 2263, 2384
BsrDI	GCAATG	1 cut(s)	1265
BsrFI	RCCGGY	1 cut(s)	2475
BsrI	ACTGG	4 cut(s)	667, 802, 2201, 2314
BssAI	RCCGGY	1 cut(s)	2475
BssMI	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
BssNI	GRCGYC	2 cut(s)	351, 1130
BssT1I	CCWWGG	3 cut(s)	1479, 1523, 2267
Bst2UI	CCWGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
Bst4CI	ACNGT	5 cut(s)	936, 1030, 1408, 2241, 2384
Bst6I	CTCTTC	1 cut(s)	2040
BstACI	GRCGYC	2 cut(s)	351, 1130
BstAPI	GCANNNNNTGC	1 cut(s)	1032
BstC8I	GCNNGC	4 cut(s)	420, 894, 1963, 2373
BstDEI	CTNAG	7 cut(s)	64, 220, 506, 897, 1452, 1966, 2484
BstDSI	CCRYGG	2 cut(s)	511, 2380
BstF5I	GGATG	9 cut(s)	21, 581, 607, 729, 845, 965, 1475, 2295, 2303
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	6 cut(s)	205, 466, 991, 1091, 1159, 1266
BstMAI	GTCTC	6 cut(s)	1448, 1506, 1660, 1950, 1981, 2187
BstMBI	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
BstMWI	GCNNNNNNNGC	9 cut(s)	898, 1016, 1032, 1127, 1540, 1621, 1967, 2022, 2144
BstNI	CCWGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
BstNSI	RCATGY	2 cut(s)	441, 1870
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	7 cut(s)	443, 903, 1266, 1491, 2019, 2085, 2254
BstSFI	CTRYAG	2 cut(s)	1605, 2139
BstV1I	GCAGC	3 cut(s)	1428, 1699, 2086
BstV2I	GAAGAC	2 cut(s)	54, 2332
BstX2I	RGATCY	1 cut(s)	1263
BstXI	CCANNNNNNTGG	1 cut(s)	2093
BstYI	RGATCY	1 cut(s)	1263
BsuI	GTATCC	2 cut(s)	422, 583
BsuRI	GGCC	5 cut(s)	422, 516, 931, 1237, 1550
BtgI	CCRYGG	2 cut(s)	511, 2380
BtsCI	GGATG	9 cut(s)	21, 581, 607, 729, 845, 965, 1475, 2295, 2303
BtsI	GCAGTG	2 cut(s)	564, 1772
BtsIMutI	CAGTG	3 cut(s)	412, 564, 1772
Cac8I	GCNNGC	4 cut(s)	420, 894, 1963, 2373
CciI	TCATGA	1 cut(s)	1153
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	2475
Cfr13I	GGNCC	3 cut(s)	137, 192, 2128
CseI	GACGC	5 cut(s)	59, 359, 1119, 1613, 1704
CsiI	ACCWGGT	1 cut(s)	1491
Csp6I	GTAC	7 cut(s)	953, 1192, 1632, 1767, 2242, 2324, 2466
CspAI	ACCGGT	1 cut(s)	2475
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviQI	GTAC	7 cut(s)	953, 1192, 1632, 1767, 2242, 2324, 2466
DdeI	CTNAG	7 cut(s)	64, 220, 506, 897, 1452, 1966, 2484
DpnI	GATC	6 cut(s)	204, 465, 990, 1090, 1158, 1265
DpnII	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
DraI	TTTAAA	4 cut(s)	1065, 1224, 2100, 2248
DrdI	GACNNNNNNGTC	1 cut(s)	1623
DseDI	GACNNNNNNGTC	1 cut(s)	1623
EaeI	YGGCCR	2 cut(s)	929, 1235
Eam1104I	CTCTTC	1 cut(s)	2040
EarI	CTCTTC	1 cut(s)	2040
Ecl136II	GAGCTC	1 cut(s)	901
Eco130I	CCWWGG	3 cut(s)	1479, 1523, 2267
Eco24I	GRGCYC	1 cut(s)	903
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	3 cut(s)	137, 192, 2128
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	2 cut(s)	1604, 2326
Eco88I	CYCGRG	1 cut(s)	1993
EcoICRI	GAGCTC	1 cut(s)	901
EcoO109I	RGGNCCY	1 cut(s)	2128
EcoRII	CCWGG	7 cut(s)	443, 903, 1266, 1491, 2019, 2085, 2254
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	3 cut(s)	1479, 1523, 2267
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	3 cut(s)	1479, 1523, 2267
FalI	AAGNNNNNCTT	4 cut(s)	737, 769, 2243, 2275
FaqI	GGGAC	4 cut(s)	679, 814, 1394, 2114
FauI	CCCGC	1 cut(s)	2060
FblI	GTMKAC	2 cut(s)	877, 1133
Fnu4HI	GCNGC	5 cut(s)	5, 354, 1442, 1713, 2075
FokI	GGATG	9 cut(s)	8, 568, 614, 736, 832, 972, 1462, 2290, 2302
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	5 cut(s)	5, 354, 1442, 1713, 2075
FspBI	CTAG	5 cut(s)	491, 857, 1013, 1920, 2372
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	5 cut(s)	5, 354, 1442, 1713, 2075
GsuI	CTGGAG	2 cut(s)	427, 1718
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	5 cut(s)	422, 516, 931, 1237, 1550
HapII	CCGG	3 cut(s)	849, 1663, 2476
HgaI	GACGC	5 cut(s)	59, 359, 1119, 1613, 1704
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	351, 1130
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	910
HinfI	GANTC	8 cut(s)	232, 852, 1069, 1955, 1996, 2222, 2353, 2414
HpaII	CCGG	3 cut(s)	849, 1663, 2476
HphI	GGTGA	5 cut(s)	998, 1325, 1916, 2022, 2293
Hpy166II	GTNNAC	5 cut(s)	216, 878, 1134, 1877, 2326
Hpy188I	TCNGA	3 cut(s)	67, 223, 1423
Hpy8I	GTNNAC	5 cut(s)	216, 878, 1134, 1877, 2326
Hpy99I	CGWCG	1 cut(s)	1629
HpyAV	CCTTC	7 cut(s)	183, 531, 686, 821, 1160, 1291, 1892
HpyCH4III	ACNGT	5 cut(s)	936, 1030, 1408, 2241, 2384
HpyCH4IV	ACGT	1 cut(s)	1879
HpyF10VI	GCNNNNNNNGC	9 cut(s)	898, 1016, 1032, 1127, 1540, 1621, 1967, 2022, 2144
HpyF3I	CTNAG	7 cut(s)	64, 220, 506, 897, 1452, 1966, 2484
HpySE526I	ACGT	1 cut(s)	1879
Hsp92I	GRCGYC	2 cut(s)	351, 1130
HspAI	GCGC	1 cut(s)	174
Kpn2I	TCCGGA	1 cut(s)	848
KpnI	GGTACC	1 cut(s)	1635
Kzo9I	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
LmnI	GCTCC	6 cut(s)	446, 906, 1023, 1248, 1365, 1737
Lsp1109I	GCAGC	3 cut(s)	1428, 1699, 2086
LweI	GCATC	9 cut(s)	69, 719, 854, 1230, 1552, 1783, 1991, 2134, 2312
MabI	ACCWGGT	1 cut(s)	1491
MaeI	CTAG	5 cut(s)	491, 857, 1013, 1920, 2372
MaeII	ACGT	1 cut(s)	1879
MalI	GATC	6 cut(s)	204, 465, 990, 1090, 1158, 1265
MboI	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
MfeI	CAATTG	3 cut(s)	78, 552, 871
MflI	RGATCY	1 cut(s)	1263
MhlI	GDGCHC	2 cut(s)	903, 1028
MlsI	TGGCCA	1 cut(s)	931
MluNI	TGGCCA	1 cut(s)	931
MlyI	GAGTC	2 cut(s)	2005, 2216
MmeI	TCCRAC	1 cut(s)	42
Mox20I	TGGCCA	1 cut(s)	931
MroI	TCCGGA	1 cut(s)	848
MroXI	GAANNNNTTC	2 cut(s)	501, 1323
MscI	TGGCCA	1 cut(s)	931
MslI	CAYNNNNRTG	2 cut(s)	921, 2063
Msp20I	TGGCCA	1 cut(s)	931
MspA1I	CMGCKG	1 cut(s)	1441
MspI	CCGG	3 cut(s)	849, 1663, 2476
MspR9I	CCNGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
MunI	CAATTG	3 cut(s)	78, 552, 871
MvaI	CCWGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
MwoI	GCNNNNNNNGC	9 cut(s)	898, 1016, 1032, 1127, 1540, 1621, 1967, 2022, 2144
NdeII	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
NheI	GCTAGC	1 cut(s)	2371
NmeAIII	GCCGAG	3 cut(s)	649, 784, 2024
NspI	RCATGY	2 cut(s)	441, 1870
OliI	CACNNNNGTG	1 cut(s)	2063
PaeR7I	CTCGAG	1 cut(s)	1993
PagI	TCATGA	1 cut(s)	1153
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdmI	GAANNNNTTC	2 cut(s)	501, 1323
PfeI	GAWTC	6 cut(s)	232, 852, 1069, 1955, 2353, 2414
PflFI	GACNNNGTC	1 cut(s)	1373
PfoI	TCCNGGA	1 cut(s)	903
PinAI	ACCGGT	1 cut(s)	2475
PkrI	GCNGC	5 cut(s)	6, 355, 1443, 1714, 2076
PleI	GAGTC	2 cut(s)	2004, 2216
PpsI	GAGTC	2 cut(s)	2004, 2216
PpuMI	RGGWCCY	1 cut(s)	2128
PshAI	GACNNNNGTC	1 cut(s)	72
PshBI	ATTAAT	2 cut(s)	32, 1322
Psp124BI	GAGCTC	1 cut(s)	903
Psp5II	RGGWCCY	1 cut(s)	2128
Psp6I	CCWGG	7 cut(s)	443, 903, 1266, 1491, 2019, 2085, 2254
PspGI	CCWGG	7 cut(s)	443, 903, 1266, 1491, 2019, 2085, 2254
PspPI	GGNCC	3 cut(s)	137, 192, 2128
PspPPI	RGGWCCY	1 cut(s)	2128
PspXI	VCTCGAGB	1 cut(s)	1993
PsuI	RGATCY	1 cut(s)	1263
PsyI	GACNNNGTC	1 cut(s)	1373
PvuII	CAGCTG	1 cut(s)	1441
RsaI	GTAC	7 cut(s)	954, 1193, 1633, 1768, 2243, 2325, 2467
RsaNI	GTAC	7 cut(s)	953, 1192, 1632, 1767, 2242, 2324, 2466
RseI	CAYNNNNRTG	2 cut(s)	921, 2063
SacI	GAGCTC	1 cut(s)	903
SatI	GCNGC	5 cut(s)	5, 354, 1442, 1713, 2075
Sau3AI	GATC	6 cut(s)	202, 463, 988, 1088, 1156, 1263
Sau96I	GGNCC	3 cut(s)	137, 192, 2128
ScaI	AGTACT	1 cut(s)	2243
SchI	GAGTC	2 cut(s)	2005, 2216
ScrFI	CCNGG	7 cut(s)	445, 905, 1268, 1493, 2021, 2087, 2256
SduI	GDGCHC	2 cut(s)	903, 1028
SexAI	ACCWGGT	1 cut(s)	1491
SfaNI	GCATC	9 cut(s)	69, 719, 854, 1230, 1552, 1783, 1991, 2134, 2312
SfcI	CTRYAG	2 cut(s)	1605, 2139
Sfr274I	CTCGAG	1 cut(s)	1993
SinI	GGWCC	3 cut(s)	137, 192, 2128
SlaI	CTCGAG	1 cut(s)	1993
SmiMI	CAYNNNNRTG	2 cut(s)	921, 2063
SmlI	CTYRAG	3 cut(s)	1047, 1697, 1993
SmoI	CTYRAG	3 cut(s)	1047, 1697, 1993
SsiI	CCGC	9 cut(s)	5, 286, 354, 494, 599, 721, 1534, 1980, 2053
SspMI	CTAG	5 cut(s)	491, 857, 1013, 1920, 2372
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	7 cut(s)	443, 903, 1266, 1491, 2019, 2085, 2254
StyI	CCWWGG	3 cut(s)	1479, 1523, 2267
TaaI	ACNGT	5 cut(s)	936, 1030, 1408, 2241, 2384
TaiI	ACGT	1 cut(s)	1882
TaqI	TCGA	2 cut(s)	201, 1994
TatI	WGTACW	3 cut(s)	952, 1766, 2241
TauI	GCSGC	2 cut(s)	7, 356
TfiI	GAWTC	6 cut(s)	232, 852, 1069, 1955, 2353, 2414
TscAI	CASTG	3 cut(s)	412, 564, 1779
TseI	GCWGC	3 cut(s)	1441, 1712, 2074
TspDTI	ATGAA	7 cut(s)	668, 803, 939, 1142, 1356, 1742, 2306
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	3 cut(s)	412, 564, 1779
Tth111I	GACNNNGTC	1 cut(s)	1373
VpaK11BI	GGWCC	3 cut(s)	137, 192, 2128
VspI	ATTAAT	2 cut(s)	32, 1322
XapI	RAATTY	4 cut(s)	262, 275, 313, 970
XceI	RCATGY	2 cut(s)	441, 1870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1521
XhoI	CTCGAG	1 cut(s)	1993
XmiI	GTMKAC	2 cut(s)	877, 1133
XmnI	GAANNNNTTC	2 cut(s)	501, 1323
XspI	CTAG	5 cut(s)	491, 857, 1013, 1920, 2372
ZrmI	AGTACT	1 cut(s)	2243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.