Rw7G033730

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
49774220 .. 49790752
16533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G033730.1

Sequence Viewer

Length: 783 bp
ATGGCGAAGCAAGTCTCTGATCACCTGGAGCCATGGCGCGACCTACCCGACAAGGTCGTCATGGTCACCGGCGCCTCTTCCGGCCTCGGCCGTGACTTCTGTTTGGATTTGGCCAAAGCCGGCTGCCGGATTGTCGCCTCTGCTCGCCGCGTCGACCGCCTCCAGTCTGTCTGTGTCTCTGTGATGAAATCAACCATCTCTCCACCGCTCCGCCGCAACCGAGGGCCGTCGCGGTCGAGCTCGACGTCAGCGCCGACGGCTCTGCTATTCAGAAGTAATGTGGCGTCTCCATTGGAAATGTCTGAGGAGGAGTGGAACAGCACTTTCAAGACAAACTTGACTGGCACCTGGTTGGTGTCAAAATATGTTTCTCTATGCATGCGTGATGCAGGTAAGGGAGGATCAATCATTAATATATCTTCCATTTCTGGTCTTGATCGTGGATCTGTGCCTGGAGGTTTAGCCTACAATTGCTCAAGGGCTGGCGTAAACACCTTGACAAAGGTCATGGCTGTGGAGTTGGGGGTACACAAGATCAGAGTGAATGCAATATCACCTGGGCTTTTCAGATCTGAAATTACAGAGGGTCTTATGCAAAAAGATTGGCTACACAATGTGGCTATGAGGACTGTCCCTTTGAGAACATATGGCACTTCAGATCCAGCATTGACATCACTAGCTCGTTATTTGATACATGACTCCTCTGAATATGTCTCGGGCAATATTTACATTGTAGACGCAGGAGTCACCTTGCCAGGTGTCCCTATTTTCTCTTCCCTTTGA

Protein Analysis

260

Amino Acids

28.02

Weight (kDa)

9.42

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 18 - 58 1.5e-07 short chain dehydrogenase
adh_short_C2 PF13561 97 - 250 1.7e-31 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 98 - 199 1e-23 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 743
AatII GACGTC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 380
AccB1I GGYRCC 2 cut(s) 71, 344
AccBSI CCGCTC 1 cut(s) 208
AccI GTMKAC 2 cut(s) 153, 735
AccII CGCG 3 cut(s) 39, 150, 232
AciI CCGC 6 cut(s) 148, 157, 206, 211, 214, 232
AclWI GGATC 3 cut(s) 409, 451, 653
AcoI YGGCCR 2 cut(s) 88, 111
AcuI CTGAAG 1 cut(s) 639
AcyI GRCGYC 3 cut(s) 72, 245, 284
AdeI CACNNNGTG 1 cut(s) 616
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 5 cut(s) 24, 347, 451, 556, 754
AluBI AGCT 2 cut(s) 240, 680
AluI AGCT 2 cut(s) 240, 680
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 4 cut(s) 19, 181, 291, 718
AlwI GGATC 3 cut(s) 409, 451, 653
Ama87I CYCGRG 1 cut(s) 715
AoxI GGCC 4 cut(s) 82, 88, 111, 224
ApeKI GCWGC 1 cut(s) 123
ArsI GACNNNNNNTTYG 2 cut(s) 619, 651
AseI ATTAAT 1 cut(s) 411
AspLEI GCGC 3 cut(s) 39, 74, 253
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 4 cut(s) 14, 58, 546, 739
AvaI CYCGRG 1 cut(s) 715
BalI TGGCCA 1 cut(s) 113
BanI GGYRCC 2 cut(s) 71, 344
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 203
BceAI ACGGC 3 cut(s) 75, 211, 273
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 5 cut(s) 26, 349, 453, 558, 756
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 4 cut(s) 19, 181, 291, 718
BfaI CTAG 1 cut(s) 677
BfoI RGCGCY 2 cut(s) 75, 254
BfuAI ACCTGC 1 cut(s) 380
BglII AGATCT 1 cut(s) 569
BisI GCNGC 3 cut(s) 124, 148, 214
BlsI GCNGC 3 cut(s) 125, 149, 215
Bme1390I CCNGG 5 cut(s) 26, 349, 453, 558, 756
BmeT110I CYCGRG 1 cut(s) 715
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 3 cut(s) 30, 73, 346
BmrFI CCNGG 5 cut(s) 26, 349, 453, 558, 756
BmsI GCATC 1 cut(s) 376
BoxI GACNNNNGTC 1 cut(s) 503
BpmI CTGGAG 3 cut(s) 47, 146, 474
BpuEI CTTGAG 1 cut(s) 460
BsaHI GRCGYC 3 cut(s) 72, 245, 284
BsaJI CCNNGG 4 cut(s) 32, 85, 220, 557
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 2 cut(s) 68, 119
Bse1I ACTGG 2 cut(s) 163, 346
BseBI CCWGG 5 cut(s) 26, 349, 453, 558, 756
BseDI CCNNGG 4 cut(s) 32, 85, 220, 557
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 163, 346
BseRI GAGGAG 3 cut(s) 320, 323, 691
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 3 cut(s) 39, 150, 232
Bsh1285I CGRYCG 3 cut(s) 91, 157, 236
BshFI GGCC 4 cut(s) 84, 90, 113, 226
BshNI GGYRCC 2 cut(s) 71, 344
BsiEI CGRYCG 3 cut(s) 91, 157, 236
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 715
BsiSI CCGG 4 cut(s) 69, 81, 120, 127
BslFI GGGAC 2 cut(s) 617, 746
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 4 cut(s) 19, 181, 291, 718
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 2 cut(s) 617, 746
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 4 cut(s) 84, 90, 113, 226
BsoBI CYCGRG 1 cut(s) 715
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 6 cut(s) 148, 157, 206, 211, 214, 232
BspANI GGCC 4 cut(s) 84, 90, 113, 226
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 3 cut(s) 39, 150, 232
BspLI GGNNCC 3 cut(s) 30, 73, 346
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 3 cut(s) 409, 451, 653
BspT107I GGYRCC 2 cut(s) 71, 344
BsrBI CCGCTC 1 cut(s) 208
BsrFI RCCGGY 2 cut(s) 68, 119
BsrI ACTGG 2 cut(s) 163, 346
BssAI RCCGGY 2 cut(s) 68, 119
BssECI CCNNGG 4 cut(s) 32, 85, 220, 557
BssMI GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
BssNI GRCGYC 3 cut(s) 72, 245, 284
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 5 cut(s) 26, 349, 453, 558, 756
Bst4CI ACNGT 1 cut(s) 631
Bst6I CTCTTC 2 cut(s) 82, 778
BstACI GRCGYC 3 cut(s) 72, 245, 284
BstC8I GCNNGC 4 cut(s) 121, 145, 380, 484
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 1 cut(s) 32
BstEII GGTNACC 1 cut(s) 64
BstFNI CGCG 3 cut(s) 39, 150, 232
BstH2I RGCGCY 2 cut(s) 75, 254
BstHHI GCGC 3 cut(s) 39, 74, 253
BstKTI GATC 7 cut(s) 22, 404, 439, 446, 537, 572, 661
BstMAI GTCTC 4 cut(s) 19, 181, 291, 718
BstMBI GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
BstMCI CGRYCG 3 cut(s) 91, 157, 236
BstMWI GCNNNNNNNGC 2 cut(s) 156, 257
BstNI CCWGG 5 cut(s) 26, 349, 453, 558, 756
BstNSI RCATGY 1 cut(s) 382
BstPAI GACNNNNGTC 1 cut(s) 503
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 5 cut(s) 24, 347, 451, 556, 754
BstUI CGCG 3 cut(s) 39, 150, 232
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 3 cut(s) 443, 569, 658
BstYI RGATCY 3 cut(s) 443, 569, 658
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 4 cut(s) 84, 90, 113, 226
BtgI CCRYGG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 4 cut(s) 121, 145, 380, 484
CfoI GCGC 3 cut(s) 39, 74, 253
Cfr10I RCCGGY 2 cut(s) 68, 119
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 3 cut(s) 139, 273, 746
CsiI ACCWGGT 1 cut(s) 347
Csp6I GTAC 1 cut(s) 527
CviAII CATG 5 cut(s) 33, 61, 379, 508, 695
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 1 cut(s) 303
DinI GGCGCC 1 cut(s) 73
DpnI GATC 7 cut(s) 21, 403, 438, 445, 536, 571, 660
DpnII GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
DraIII CACNNNGTG 1 cut(s) 616
DrdI GACNNNNNNGTC 2 cut(s) 56, 743
DseDI GACNNNNNNGTC 2 cut(s) 56, 743
EaeI YGGCCR 2 cut(s) 88, 111
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 82, 778
EarI CTCTTC 2 cut(s) 82, 778
EciI GGCGGA 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 242
Eco52I CGGCCG 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 715
Eco91I GGTNACC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 240
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 5 cut(s) 24, 347, 451, 556, 754
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 242
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 5 cut(s) 36, 64, 382, 511, 698
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 2 cut(s) 617, 746
FatI CATG 5 cut(s) 32, 60, 378, 507, 694
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 2 cut(s) 153, 735
Fnu4HI GCNGC 3 cut(s) 124, 148, 214
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 124, 148, 214
FspBI CTAG 1 cut(s) 677
GlaI GCGC 3 cut(s) 38, 73, 252
GluI GCNGC 3 cut(s) 124, 148, 214
GsuI CTGGAG 3 cut(s) 47, 146, 474
HaeII RGCGCY 2 cut(s) 75, 254
HaeIII GGCC 4 cut(s) 84, 90, 113, 226
HapII CCGG 4 cut(s) 69, 81, 120, 127
HgaI GACGC 3 cut(s) 139, 273, 746
HhaI GCGC 3 cut(s) 39, 74, 253
Hin1I GRCGYC 3 cut(s) 72, 245, 284
Hin1II CATG 5 cut(s) 36, 64, 382, 511, 698
Hin6I GCGC 3 cut(s) 37, 72, 251
HinP1I GCGC 3 cut(s) 37, 72, 251
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 698, 744
HpaII CCGG 4 cut(s) 69, 81, 120, 127
HphI GGTGA 4 cut(s) 14, 58, 546, 739
Hpy166II GTNNAC 4 cut(s) 154, 490, 529, 736
Hpy188I TCNGA 8 cut(s) 19, 272, 304, 539, 569, 574, 658, 706
Hpy188III TCNNGA 2 cut(s) 328, 434
Hpy8I GTNNAC 4 cut(s) 154, 490, 529, 736
Hpy99I CGWCG 4 cut(s) 155, 232, 247, 259
HpyCH4III ACNGT 1 cut(s) 631
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 378, 389, 548, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 257
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 245
Hsp92I GRCGYC 3 cut(s) 72, 245, 284
Hsp92II CATG 5 cut(s) 36, 64, 382, 511, 698
HspAI GCGC 3 cut(s) 37, 72, 251
KasI GGCGCC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
LmnI GCTCC 2 cut(s) 28, 213
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 376
MabI ACCWGGT 1 cut(s) 347
MaeI CTAG 1 cut(s) 677
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 64, 92, 745
MalI GATC 7 cut(s) 21, 403, 438, 445, 536, 571, 660
MbiI CCGCTC 1 cut(s) 208
MboI GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
MboII GAAGA 3 cut(s) 69, 411, 765
MfeI CAATTG 1 cut(s) 469
MflI RGATCY 3 cut(s) 443, 569, 658
MhlI GDGCHC 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 2 cut(s) 469, 576
MluNI TGGCCA 1 cut(s) 113
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 2 cut(s) 692, 753
Mox20I TGGCCA 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 380
MroNI GCCGGC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 113
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 512
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 4 cut(s) 69, 81, 120, 127
MspR9I CCNGG 5 cut(s) 26, 349, 453, 558, 756
MunI CAATTG 1 cut(s) 469
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 5 cut(s) 26, 349, 453, 558, 756
MvnI CGCG 3 cut(s) 39, 150, 232
MwoI GCNNNNNNNGC 2 cut(s) 156, 257
NaeI GCCGGC 1 cut(s) 121
NarI GGCGCC 1 cut(s) 72
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 646
NdeII GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 5 cut(s) 36, 64, 382, 511, 698
NlaIV GGNNCC 3 cut(s) 30, 73, 346
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 3 cut(s) 64, 92, 745
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PcsI WCGNNNNNNNCGW 2 cut(s) 242, 251
PctI GAATGC 1 cut(s) 550
PdiI GCCGGC 1 cut(s) 121
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 125, 149, 215
PleI GAGTC 2 cut(s) 692, 752
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 2 cut(s) 692, 752
PshAI GACNNNNGTC 1 cut(s) 503
PshBI ATTAAT 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 5 cut(s) 24, 347, 451, 556, 754
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 5 cut(s) 24, 347, 451, 556, 754
PspN4I GGNNCC 3 cut(s) 30, 73, 346
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 3 cut(s) 443, 569, 658
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
RseI CAYNNNNRTG 1 cut(s) 512
SacI GAGCTC 1 cut(s) 242
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 3 cut(s) 124, 148, 214
Sau3AI GATC 7 cut(s) 19, 401, 436, 443, 534, 569, 658
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 2 cut(s) 692, 753
ScrFI CCNGG 5 cut(s) 26, 349, 453, 558, 756
SduI GDGCHC 1 cut(s) 242
SexAI ACCWGGT 1 cut(s) 347
SfaNI GCATC 1 cut(s) 376
SfoI GGCGCC 1 cut(s) 73
SgrAI CRCCGGYG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SphI GCATGC 1 cut(s) 382
Sse9I AATT 2 cut(s) 469, 576
SsiI CCGC 6 cut(s) 148, 157, 206, 211, 214, 232
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 724
SspMI CTAG 1 cut(s) 677
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 5 cut(s) 24, 347, 451, 556, 754
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 631
TaiI ACGT 1 cut(s) 248
TaqI TCGA 3 cut(s) 153, 236, 242
TasI AATT 2 cut(s) 469, 576
TauI GCSGC 2 cut(s) 150, 216
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseFI GTSAC 3 cut(s) 64, 92, 745
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 3 cut(s) 64, 92, 745
TspDTI ATGAA 1 cut(s) 200
Tth111I GACNNNGTC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 411
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 2 cut(s) 153, 735
XspI CTAG 1 cut(s) 677
ZraI GACGTC 1 cut(s) 246
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.