Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Reverse (-)

52273215 .. 52275557

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1420900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGAATCCTCATCGAGTGTCGGACCACCTGGAGCCCTGGGGCCACCTCCACGGCAAAGTCGTCATGGTCACCGGCGCTTCCTCTGGCCTCGGCCGCGAGTTGTGCTTAGACTTGGCTAAAGCCGGCTGCAGAATCGTAGCCTCCGCTCGCCGCATCGACCGCCTTCAGTCCGTGTGCGTTCAAATCAACCAGCTCTCCATCACCGCTCCTTCTTCACCATCTTCTGTTGCTGATAATGGGCCTGGAGGAGGCCCGAGGGCTGTGGCTGTGGAGCTGGATGTCAGCGCCGATGGTTCAGCTATCGAGAAGTCCGTGAACAAGGCTTGGGACGCGTTTGGGCTCATCGATGCCCTTGTTAACAATGCCGGTATTAGAGGTAATGTGAGTTCTCCATTGGAACTGTCTGAGGAGGAATGGAATAATGTTTTCAGGACAAATTTGACGGGTTCCTGGTTGGTATCAAAGTTTGTTGCTATACGCATGCGAGATGCTGATCAGGGAGGGTCAATCGTCAATATATCTTCCATTACTGGTCTTAATCGTGGATTTGCGCCTGGAGCTACAGCATACAATTGTTCAAAGGCTGGTGTAAACACCTTAACAAAGACTATGGCTATGGAGCTGGGGGTACACAAAATCAGAGTGAATGCAATATCACTTGGACTTTTCAGATCGGAAATTACGGAGCGTCTTATGCAAAAAGACTGGCTGCACAATGTGGCTATGAAAATTGTCCCTTTAAGAACATTTGGCACTTCAGATCCAGCATTGACATCGCTAGTTCGATATTTGGTACATGACTCTTCTGAATATGTCTCTGGCAACATTTATATTGTTGATGCAGGAACCTCCTTGCCGGGTGTTCCTATTTTCTCTTCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

296

Amino Acids

31.47

Weight (kDa)

7.05

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	20 - 235	3e-45	short chain dehydrogenase
KR	PF08659	22 - 205	5.4e-07	KR domain
adh_short_C2	PF13561	87 - 284	9.2e-39	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	149, 209
AccII	CGCG	2 cut(s)	99, 335
AciI	CCGC	5 cut(s)	97, 147, 154, 163, 207
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	152, 744
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	633, 798
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	185, 582
AjnI	CCWGG	5 cut(s)	30, 38, 244, 452, 556
AluBI	AGCT	5 cut(s)	196, 277, 302, 563, 625
AluI	AGCT	5 cut(s)	196, 277, 302, 563, 625
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	1 cut(s)	758
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	5 cut(s)	43, 88, 94, 242, 253
ApeKI	GCWGC	2 cut(s)	129, 712
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	3 cut(s)	80, 290, 556
AspS9I	GGNCC	4 cut(s)	25, 43, 242, 254
AsuC2I	CCSGG	1 cut(s)	861
AsuHPI	GGTGA	3 cut(s)	64, 196, 210
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	39, 345
BbvI	GCAGC	2 cut(s)	116, 699
BccI	CCATC	3 cut(s)	209, 229, 287
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	759, 793
BciT130I	CCWGG	5 cut(s)	32, 40, 246, 454, 558
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	2 cut(s)	130, 564
BfoI	RGCGCY	2 cut(s)	81, 291
BisI	GCNGC	4 cut(s)	97, 130, 154, 713
BlsI	GCNGC	4 cut(s)	98, 131, 155, 714
Bme1390I	CCNGG	6 cut(s)	32, 40, 246, 454, 558, 861
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	4 cut(s)	25, 43, 242, 254
BmiI	GGNNCC	4 cut(s)	36, 44, 451, 850
BmrFI	CCNGG	6 cut(s)	32, 40, 246, 454, 558, 861
BmsI	GCATC	4 cut(s)	165, 340, 481, 832
BpmI	CTGGAG	3 cut(s)	53, 267, 579
BpuMI	CCSGG	1 cut(s)	861
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	5 cut(s)	38, 39, 52, 91, 257
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse118I	RCCGGY	3 cut(s)	74, 125, 368
Bse1I	ACTGG	2 cut(s)	538, 713
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	5 cut(s)	32, 40, 246, 454, 558
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	5 cut(s)	38, 39, 52, 91, 257
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	538, 713
BseRI	GAGGAG	2 cut(s)	264, 425
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	116, 699
BseYI	CCCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	99, 335
Bsh1285I	CGRYCG	2 cut(s)	97, 163
BshFI	GGCC	5 cut(s)	45, 90, 96, 244, 255
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	2 cut(s)	97, 163
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	4 cut(s)	75, 126, 369, 860
BslFI	GGGAC	2 cut(s)	344, 722
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	823
BsmFI	GGGAC	2 cut(s)	344, 722
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	5 cut(s)	45, 90, 96, 244, 255
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	39, 345
Bsp143I	GATC	3 cut(s)	496, 674, 763
BspACI	CCGC	5 cut(s)	97, 147, 154, 163, 207
BspANI	GGCC	5 cut(s)	45, 90, 96, 244, 255
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	2 cut(s)	99, 335
BspLI	GGNNCC	4 cut(s)	36, 44, 451, 850
BspMAI	CTGCAG	1 cut(s)	134
BspPI	GGATC	1 cut(s)	758
BsrBI	CCGCTC	2 cut(s)	149, 209
BsrFI	RCCGGY	3 cut(s)	74, 125, 368
BsrI	ACTGG	2 cut(s)	538, 713
BssAI	RCCGGY	3 cut(s)	74, 125, 368
BssECI	CCNNGG	5 cut(s)	38, 39, 52, 91, 257
BssMI	GATC	3 cut(s)	496, 674, 763
Bst2UI	CCWGG	5 cut(s)	32, 40, 246, 454, 558
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	811, 883
BstC8I	GCNNGC	3 cut(s)	127, 151, 485
BstDEI	CTNAG	2 cut(s)	109, 408
BstDSI	CCRYGG	1 cut(s)	52
BstEII	GGTNACC	1 cut(s)	70
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	2 cut(s)	99, 335
BstH2I	RGCGCY	2 cut(s)	81, 291
BstHHI	GCGC	3 cut(s)	80, 290, 556
BstKTI	GATC	3 cut(s)	499, 677, 766
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	3 cut(s)	496, 674, 763
BstMCI	CGRYCG	2 cut(s)	97, 163
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 105, 162, 332, 560, 697
BstNI	CCWGG	5 cut(s)	32, 40, 246, 454, 558
BstNSI	RCATGY	1 cut(s)	487
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	6 cut(s)	30, 38, 244, 452, 556, 859
BstSFI	CTRYAG	2 cut(s)	130, 564
BstUI	CGCG	2 cut(s)	99, 335
BstV1I	GCAGC	2 cut(s)	116, 699
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BstZI	CGGCCG	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	45, 90, 96, 244, 255
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	52
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	127, 151, 485
CfoI	GCGC	3 cut(s)	80, 290, 556
Cfr10I	RCCGGY	3 cut(s)	74, 125, 368
Cfr13I	GGNCC	4 cut(s)	25, 43, 242, 254
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	2 cut(s)	341, 680
Csp6I	GTAC	2 cut(s)	632, 797
CviAII	CATG	3 cut(s)	67, 484, 800
CviQI	GTAC	2 cut(s)	632, 797
DdeI	CTNAG	2 cut(s)	109, 408
DpnI	GATC	3 cut(s)	498, 676, 765
DpnII	GATC	3 cut(s)	496, 674, 763
DraIII	CACNNNGTG	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	811, 883
EarI	CTCTTC	2 cut(s)	811, 883
EclXI	CGGCCG	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	39, 345
Eco47I	GGWCC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	152, 744
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoO65I	GGTNACC	1 cut(s)	70
EcoRII	CCWGG	5 cut(s)	30, 38, 244, 452, 556
EcoT38I	GRGCYC	2 cut(s)	39, 345
FaeI	CATG	3 cut(s)	70, 487, 803
FaqI	GGGAC	2 cut(s)	344, 722
FatI	CATG	3 cut(s)	66, 483, 799
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	4 cut(s)	97, 130, 154, 713
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	39, 345
Fsp4HI	GCNGC	4 cut(s)	97, 130, 154, 713
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	3 cut(s)	79, 289, 555
GluI	GCNGC	4 cut(s)	97, 130, 154, 713
GsaI	CCCAGC	1 cut(s)	629
GsuI	CTGGAG	3 cut(s)	53, 267, 579
HaeII	RGCGCY	2 cut(s)	81, 291
HaeIII	GGCC	5 cut(s)	45, 90, 96, 244, 255
HapII	CCGG	4 cut(s)	75, 126, 369, 860
HgaI	GACGC	2 cut(s)	341, 680
HhaI	GCGC	3 cut(s)	80, 290, 556
Hin1II	CATG	3 cut(s)	70, 487, 803
Hin6I	GCGC	3 cut(s)	78, 288, 554
HinP1I	GCGC	3 cut(s)	78, 288, 554
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	7, 135, 803
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	4 cut(s)	75, 126, 369, 860
HphI	GGTGA	3 cut(s)	64, 196, 210
Hpy166II	GTNNAC	4 cut(s)	319, 361, 595, 634
Hpy188I	TCNGA	8 cut(s)	25, 409, 644, 674, 679, 763, 811, 887
Hpy188III	TCNNGA	2 cut(s)	307, 433
Hpy8I	GTNNAC	4 cut(s)	319, 361, 595, 634
HpyAV	CCTTC	2 cut(s)	176, 222
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4V	TGCA	5 cut(s)	132, 653, 700, 715, 845
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 105, 162, 332, 560, 697
HpyF3I	CTNAG	2 cut(s)	109, 408
Hsp92II	CATG	3 cut(s)	70, 487, 803
HspAI	GCGC	3 cut(s)	78, 288, 554
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	496, 674, 763
LmnI	GCTCC	6 cut(s)	34, 214, 274, 560, 622, 688
Lsp1109I	GCAGC	2 cut(s)	116, 699
LweI	GCATC	4 cut(s)	165, 340, 481, 832
MaeI	CTAG	1 cut(s)	782
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	498, 676, 765
MbiI	CCGCTC	2 cut(s)	149, 209
MboI	GATC	3 cut(s)	496, 674, 763
MboII	GAAGA	5 cut(s)	207, 216, 516, 798, 870
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	2 cut(s)	39, 345
MluCI	AATT	4 cut(s)	439, 574, 681, 732
MluI	ACGCGT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	797
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	4 cut(s)	360, 540, 602, 743
MspI	CCGG	4 cut(s)	75, 126, 369, 860
MspR9I	CCNGG	6 cut(s)	32, 40, 246, 454, 558, 861
MunI	CAATTG	1 cut(s)	574
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	5 cut(s)	32, 40, 246, 454, 558
MvnI	CGCG	2 cut(s)	99, 335
MwoI	GCNNNNNNNGC	6 cut(s)	96, 105, 162, 332, 560, 697
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	861
NdeII	GATC	3 cut(s)	496, 674, 763
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	3 cut(s)	70, 487, 803
NlaIV	GGNNCC	4 cut(s)	36, 44, 451, 850
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	487
PaeI	GCATGC	1 cut(s)	487
PasI	CCCWGGG	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 312
PctI	GAATGC	1 cut(s)	655
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	7, 135
PkrI	GCNGC	4 cut(s)	98, 131, 155, 714
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
Psp6I	CCWGG	5 cut(s)	30, 38, 244, 452, 556
PspEI	GGTNACC	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	5 cut(s)	30, 38, 244, 452, 556
PspN4I	GGNNCC	4 cut(s)	36, 44, 451, 850
PspPI	GGNCC	4 cut(s)	25, 43, 242, 254
PsrI	GAACNNNNNNTAC	2 cut(s)	373, 405
PstI	CTGCAG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	2 cut(s)	633, 798
RsaNI	GTAC	2 cut(s)	632, 797
SaqAI	TTAA	4 cut(s)	360, 540, 602, 743
SatI	GCNGC	4 cut(s)	97, 130, 154, 713
Sau3AI	GATC	3 cut(s)	496, 674, 763
Sau96I	GGNCC	4 cut(s)	25, 43, 242, 254
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	6 cut(s)	32, 40, 246, 454, 558, 861
SduI	GDGCHC	2 cut(s)	39, 345
SfaNI	GCATC	4 cut(s)	165, 340, 481, 832
SfcI	CTRYAG	2 cut(s)	130, 564
SgrAI	CRCCGGYG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	25
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	4 cut(s)	439, 574, 681, 732
SsiI	CCGC	5 cut(s)	97, 147, 154, 163, 207
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	6 cut(s)	30, 38, 244, 452, 556, 859
TaaI	ACNGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	16, 159, 306, 348, 787
TasI	AATT	4 cut(s)	439, 574, 681, 732
TauI	GCSGC	2 cut(s)	99, 156
TfiI	GAWTC	2 cut(s)	7, 135
Tru1I	TTAA	4 cut(s)	360, 540, 602, 743
Tru9I	TTAA	4 cut(s)	360, 540, 602, 743
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	129, 712
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	743
TspGWI	ACGGA	3 cut(s)	163, 304, 701
VpaK11BI	GGWCC	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	487
XspI	CTAG	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.