Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Forward (+)

7758846 .. 7759881

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17845.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCGTTTTGGTTTAGAGACAAGTCTTTATATGTTATGGGCATATCCTTCTCCACCAAAGAACACACAAAGAGAAACAACATGAGTAATCATCAAACTGTGCGTGAGATACTTCTTCTCTTATATCTCACTTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAGGTATGTCTTGATCTAGCCAAAGCTGGCTGTAAGATTATCGCAGCAGCTCGTCGTGTCGATCGTCTCAAATCTCTCTGCTCTGAAATAAATCGCTTCGAATATTCAGCTGGAATTCAAGCTGAAGCTCTTGAGCTAGACGTTTCATCAGACGCAGCCACCGTTCAAAAAGCGGTTAAGAAAGCTTGGGAAATCTTCGGAAAGATCGATGCGTTGATCAACAATGCGGGATTTAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAAGACGAGTGGGACAAAGTCTTCAAGACCAACTTAACCGGAACCTGGTTAGTCTCCAAATACGTATGCATTTTAATGCGCGATGCTAAACGTGGTGGTGGCTCGGTGATAAACATTTCATCAGTATCCTGGCTCCACCGCGGTCAGGTGCCTGGTGGAGTCGCATACGCTTGTTCTAAAGGCGGTGTTGACACCATGACAAGGATGATGGCACTTGAGTTAGGTGTTTACAAGATCAGAGTGAATTCGATCGCACCAGGGCTTTTAAAGTCAGAGATCACACAAGGTCTTATGCAAAAAGAGTGGCTCAAGACCGTTATCGAGAGGACAGTCCCATTAAAGGTACAACAGACAGTGGATCCGGGGCTTACTTCTCTCCTACGCTACCTCGTTCACGACTCGTCTAAATATATCTCCGGGAATACATACATTGTCGATGCTGGAGCTTCATTGGTCGGTCTGCCCATTTTTTCATCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

312

Amino Acids

34.32

Weight (kDa)

9.26

Isoelectric Point (pI)

23.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	50 - 253	1.1e-52	short chain dehydrogenase
KR	PF08659	52 - 174	6.5e-11	KR domain
Epimerase	PF01370	52 - 197	5.7e-06	NAD dependent epimerase/dehydratase family
adh_short_C2	PF13561	56 - 301	2.1e-46	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	604
AccII	CGCG	2 cut(s)	537, 597
AciI	CCGC	5 cut(s)	362, 416, 595, 597, 639
AclWI	GGATC	2 cut(s)	809, 822
AcsI	RAATTY	2 cut(s)	303, 700
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	4 cut(s)	501, 601, 657, 796
AgsI	TTSAA	3 cut(s)	308, 356, 481
AjnI	CCWGG	4 cut(s)	500, 584, 607, 712
AluBI	AGCT	9 cut(s)	170, 215, 239, 299, 311, 317, 325, 374, 902
AluI	AGCT	9 cut(s)	170, 215, 239, 299, 311, 317, 325, 374, 902
Alw26I	GTCTC	3 cut(s)	12, 260, 514
AlwI	GGATC	2 cut(s)	809, 822
ApeKI	GCWGC	3 cut(s)	233, 236, 344
ApoI	RAATTY	2 cut(s)	303, 700
AspLEI	GCGC	1 cut(s)	537
AsuC2I	CCSGG	2 cut(s)	819, 874
AsuHPI	GGTGA	1 cut(s)	574
AsuII	TTCGAA	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	604
BbsI	GAAGAC	2 cut(s)	465, 469
BbvI	GCAGC	3 cut(s)	245, 248, 356
BccI	CCATC	1 cut(s)	658
BciT130I	CCWGG	4 cut(s)	502, 586, 609, 714
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	2 cut(s)	819, 874
BcoDI	GTCTC	3 cut(s)	12, 260, 514
BfaI	CTAG	2 cut(s)	206, 326
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	3 cut(s)	234, 237, 345
BlsI	GCNGC	3 cut(s)	235, 238, 346
Bme1390I	CCNGG	6 cut(s)	502, 586, 609, 714, 819, 874
BmiI	GGNNCC	4 cut(s)	499, 590, 606, 816
BmrFI	CCNGG	6 cut(s)	502, 586, 609, 714, 819, 874
BmsI	GCATC	3 cut(s)	388, 529, 883
BpiI	GAAGAC	2 cut(s)	465, 469
BpmI	CTGGAG	1 cut(s)	918
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	3 cut(s)	341, 692, 749
BpuMI	CCSGG	2 cut(s)	819, 874
Bsa29I	ATCGAT	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	595, 713, 818
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	4 cut(s)	501, 601, 657, 796
Bse3DI	GCAATG	1 cut(s)	436
BseBI	CCWGG	4 cut(s)	502, 586, 609, 714
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	595, 713, 818
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	4 cut(s)	501, 601, 657, 796
BseMI	GCAATG	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	245, 248, 356
Bsh1236I	CGCG	2 cut(s)	537, 597
Bsh1285I	CGRYCG	2 cut(s)	253, 708
BshNI	GGYRCC	1 cut(s)	604
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	2 cut(s)	253, 708
BsiSI	CCGG	3 cut(s)	495, 818, 873
BslFI	GGGAC	2 cut(s)	482, 773
BslI	CCNNNNNNNGG	4 cut(s)	501, 601, 657, 796
BsmAI	GTCTC	3 cut(s)	12, 260, 514
BsmBI	CGTCTC	1 cut(s)	260
BsmFI	GGGAC	2 cut(s)	482, 773
Bsp119I	TTCGAA	1 cut(s)	288
Bsp143I	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
BspACI	CCGC	5 cut(s)	362, 416, 595, 597, 639
BspDI	ATCGAT	1 cut(s)	396
BspFNI	CGCG	2 cut(s)	537, 597
BspLI	GGNNCC	4 cut(s)	499, 590, 606, 816
BspPI	GGATC	2 cut(s)	809, 822
BspT104I	TTCGAA	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	436
BssECI	CCNNGG	3 cut(s)	595, 713, 818
BssMI	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
Bst2UI	CCWGG	4 cut(s)	502, 586, 609, 714
Bst4CI	ACNGT	5 cut(s)	100, 352, 772, 787, 811
Bst6I	CTCTTC	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	666
BstFNI	CGCG	2 cut(s)	537, 597
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	8 cut(s)	205, 253, 396, 408, 693, 708, 735, 817
BstMAI	GTCTC	3 cut(s)	12, 260, 514
BstMBI	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
BstMCI	CGRYCG	2 cut(s)	253, 708
BstNI	CCWGG	4 cut(s)	502, 586, 609, 714
BstSCI	CCNGG	6 cut(s)	500, 584, 607, 712, 817, 872
BstSNI	TACGTA	1 cut(s)	520
BstUI	CGCG	2 cut(s)	537, 597
BstV1I	GCAGC	3 cut(s)	245, 248, 356
BstV2I	GAAGAC	2 cut(s)	465, 469
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
Bsu15I	ATCGAT	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	592
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	666
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	537
Cfr42I	CCGCGG	1 cut(s)	598
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	350
CsiI	ACCWGGT	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	800
CspCI	CAANNNNNGTGG	2 cut(s)	740, 775
CviAII	CATG	2 cut(s)	82, 652
CviQI	GTAC	1 cut(s)	800
DpnI	GATC	8 cut(s)	204, 252, 395, 407, 692, 707, 734, 816
DpnII	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
DraI	TTTAAA	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco105I	TACGTA	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	303, 700
EcoRII	CCWGG	4 cut(s)	500, 584, 607, 712
EcoT22I	ATGCAT	1 cut(s)	527
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	2 cut(s)	85, 655
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 473, 505
FaqI	GGGAC	2 cut(s)	482, 773
FatI	CATG	2 cut(s)	81, 651
FauI	CCCGC	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	234, 237, 345
FokI	GGATG	1 cut(s)	673
Fsp4HI	GCNGC	3 cut(s)	234, 237, 345
FspBI	CTAG	2 cut(s)	206, 326
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	3 cut(s)	234, 237, 345
GsuI	CTGGAG	1 cut(s)	918
HapII	CCGG	3 cut(s)	495, 818, 873
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	2 cut(s)	85, 655
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	2 cut(s)	615, 854
HpaII	CCGG	3 cut(s)	495, 818, 873
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	4 cut(s)	137, 646, 685, 850
Hpy188I	TCNGA	6 cut(s)	274, 340, 389, 457, 695, 730
Hpy188III	TCNNGA	6 cut(s)	200, 320, 481, 766, 778, 851
Hpy8I	GTNNAC	4 cut(s)	137, 646, 685, 850
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	5 cut(s)	100, 352, 772, 787, 811
HpyCH4IV	ACGT	3 cut(s)	330, 519, 547
HpyCH4V	TGCA	2 cut(s)	525, 751
HpySE526I	ACGT	3 cut(s)	330, 519, 547
Hsp92II	CATG	2 cut(s)	85, 655
HspAI	GCGC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	598
Kzo9I	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
LmnI	GCTCC	3 cut(s)	167, 594, 899
Lsp1109I	GCAGC	3 cut(s)	245, 248, 356
LweI	GCATC	3 cut(s)	388, 529, 883
MabI	ACCWGGT	1 cut(s)	500
MaeI	CTAG	2 cut(s)	206, 326
MaeII	ACGT	3 cut(s)	330, 519, 547
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	8 cut(s)	204, 252, 395, 407, 692, 707, 734, 816
MboI	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
MboII	GAAGA	5 cut(s)	107, 198, 376, 469, 470
MflI	RGATCY	1 cut(s)	814
MluCI	AATT	2 cut(s)	303, 700
MlyI	GAGTC	2 cut(s)	624, 848
MnlI	CCTC	5 cut(s)	184, 184, 419, 774, 854
Mph1103I	ATGCAT	1 cut(s)	527
MseI	TTAA	6 cut(s)	141, 366, 491, 530, 722, 794
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	2 cut(s)	299, 597
MspI	CCGG	3 cut(s)	495, 818, 873
MspR9I	CCNGG	6 cut(s)	502, 586, 609, 714, 819, 874
MvaI	CCWGG	4 cut(s)	502, 586, 609, 714
MvnI	CGCG	2 cut(s)	537, 597
NciI	CCSGG	2 cut(s)	819, 874
NdeII	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
NlaIII	CATG	2 cut(s)	85, 655
NlaIV	GGNNCC	4 cut(s)	499, 590, 606, 816
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	3 cut(s)	250, 348, 393
PflFI	GACNNNGTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	872
PkrI	GCNGC	3 cut(s)	235, 238, 346
Ple19I	CGATCG	2 cut(s)	253, 708
PleI	GAGTC	2 cut(s)	623, 848
PpsI	GAGTC	2 cut(s)	623, 848
Ppu21I	YACGTR	1 cut(s)	520
Psp6I	CCWGG	4 cut(s)	500, 584, 607, 712
PspGI	CCWGG	4 cut(s)	500, 584, 607, 712
PspN4I	GGNNCC	4 cut(s)	499, 590, 606, 816
PsuI	RGATCY	1 cut(s)	814
PsyI	GACNNNGTC	1 cut(s)	473
PvuI	CGATCG	2 cut(s)	253, 708
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	1 cut(s)	530
SacII	CCGCGG	1 cut(s)	598
SaqAI	TTAA	6 cut(s)	141, 366, 491, 530, 722, 794
SatI	GCNGC	3 cut(s)	234, 237, 345
Sau3AI	GATC	8 cut(s)	202, 250, 393, 405, 690, 705, 732, 814
SchI	GAGTC	2 cut(s)	624, 848
ScrFI	CCNGG	6 cut(s)	502, 586, 609, 714, 819, 874
SexAI	ACCWGGT	1 cut(s)	500
SfaNI	GCATC	3 cut(s)	388, 529, 883
Sfr303I	CCGCGG	1 cut(s)	598
SfuI	TTCGAA	1 cut(s)	288
SgrBI	CCGCGG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	3 cut(s)	320, 671, 764
SmoI	CTYRAG	3 cut(s)	320, 671, 764
SnaBI	TACGTA	1 cut(s)	520
Sse9I	AATT	2 cut(s)	303, 700
SsiI	CCGC	5 cut(s)	362, 416, 595, 597, 639
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	2 cut(s)	206, 326
StyD4I	CCNGG	6 cut(s)	500, 584, 607, 712, 817, 872
TaaI	ACNGT	5 cut(s)	100, 352, 772, 787, 811
TaiI	ACGT	3 cut(s)	333, 522, 550
TaqI	TCGA	7 cut(s)	249, 288, 396, 440, 704, 777, 891
TaqII	GACCGA	1 cut(s)	902
TasI	AATT	2 cut(s)	303, 700
Tru1I	TTAA	6 cut(s)	141, 366, 491, 530, 722, 794
Tru9I	TTAA	6 cut(s)	141, 366, 491, 530, 722, 794
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	233, 236, 344
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	324, 564, 894, 918
TspRI	CASTG	1 cut(s)	816
Tth111I	GACNNNGTC	1 cut(s)	473
XapI	RAATTY	2 cut(s)	303, 700
XspI	CTAG	2 cut(s)	206, 326
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.