Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000271.1

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Reverse (-)

145117 .. 147587

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000271.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggggagatttgaagctaggggaagaagacacgaagattggaagaaaattgcaaatcgacttttcaggcgatttttccggcgacttttcaggcaaacttttccggcgagccgccactcatggatggtcttttctccagcaaaggaggaccatggtggtgagaatctcccatcacttgaaattcaaatatctccatacaccttatccttttatcaccttgccaatttgggaccatttgggggacaatggtgtaatgtggcgtctccattggaaatgtctgaggaggagtggaacagcactttcaagacaaacttgactggcacctggttggtgtcaaaatatgtttctctatgcatgcgtgatgcaggtaagggaggatcaatcattaatatatcttccatttctggtcttgatcgtggatctgtgcctggaggtttagcctacaattgctcaagggctggcgtaaacaccttgacaaaggtcatggctgtggagttgggggtacacaagatcagagtgaatgcaatatcacctgggcttttcagatctgaaattacagagggtcttatgcaaaaagattggctacacaatgtggctatgaggactgtccctttgagaacatatggcacttcagatccagcattgacatcactagctcgttatttgatacatgactcctctgaatatgtctcgggcaatatttacattgtagacgcaggagtcaccttgccaggtgtccctattttctcttccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

252

Amino Acids

28.11

Weight (kDa)

9.45

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc36I	ACCTGC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	3 cut(s)	385, 427, 629
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	592
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	14, 179, 185, 304
AjnI	CCWGG	4 cut(s)	323, 427, 532, 730
AluBI	AGCT	2 cut(s)	17, 656
AluI	AGCT	2 cut(s)	17, 656
Alw26I	GTCTC	2 cut(s)	267, 694
AlwI	GGATC	3 cut(s)	385, 427, 629
Ama87I	CYCGRG	1 cut(s)	691
ApoI	RAATTY	1 cut(s)	180
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AseI	ATTAAT	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	148, 230
AsuHPI	GGTGA	4 cut(s)	170, 206, 522, 715
AvaI	CYCGRG	1 cut(s)	691
AvaII	GGWCC	2 cut(s)	148, 230
BanI	GGYRCC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	34
BccI	CCATC	2 cut(s)	118, 178
BciT130I	CCWGG	4 cut(s)	325, 429, 534, 732
BcoDI	GTCTC	2 cut(s)	267, 694
BfaI	CTAG	2 cut(s)	18, 653
BfuAI	ACCTGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	4 cut(s)	325, 429, 534, 732
Bme18I	GGWCC	2 cut(s)	148, 230
BmeT110I	CYCGRG	1 cut(s)	691
BmgT120I	GGNCC	2 cut(s)	148, 230
BmiI	GGNNCC	2 cut(s)	231, 322
BmrFI	CCNGG	4 cut(s)	325, 429, 534, 732
BmsI	GCATC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	2 cut(s)	120, 450
BpuEI	CTTGAG	1 cut(s)	436
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	151, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	4 cut(s)	325, 429, 534, 732
BseDI	CCNNGG	2 cut(s)	151, 533
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	3 cut(s)	296, 299, 667
BshNI	GGYRCC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	2 cut(s)	79, 104
BslFI	GGGAC	4 cut(s)	243, 255, 593, 722
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	267, 694
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	4 cut(s)	243, 255, 593, 722
BsmI	GAATGC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	691
Bsp143I	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	231, 322
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	3 cut(s)	385, 427, 629
BspT107I	GGYRCC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	151, 533
BssMI	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
BssNI	GRCGYC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	4 cut(s)	325, 429, 534, 732
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	754
BstACI	GRCGYC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	109, 356, 460
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	6 cut(s)	380, 415, 422, 513, 548, 637
BstMAI	GTCTC	2 cut(s)	267, 694
BstMBI	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
BstNI	CCWGG	4 cut(s)	325, 429, 534, 732
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSCI	CCNGG	4 cut(s)	323, 427, 532, 730
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	3 cut(s)	419, 545, 634
BstYI	RGATCY	3 cut(s)	419, 545, 634
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	109, 356, 460
Cfr13I	GGNCC	2 cut(s)	148, 230
CseI	GACGC	2 cut(s)	249, 722
CsiI	ACCWGGT	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	5 cut(s)	120, 152, 355, 484, 671
CviJI	RGCY	9 cut(s)	17, 111, 440, 458, 488, 538, 583, 596, 656
CviKI_1	RGCY	9 cut(s)	17, 111, 440, 458, 488, 538, 583, 596, 656
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	6 cut(s)	379, 414, 421, 512, 547, 636
DpnII	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
DraIII	CACNNNGTG	1 cut(s)	592
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	148, 230
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	691
EcoRII	CCWGG	4 cut(s)	323, 427, 532, 730
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	5 cut(s)	123, 155, 358, 487, 674
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	4 cut(s)	243, 255, 593, 722
FatI	CATG	5 cut(s)	119, 151, 354, 483, 670
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	18, 653
GluI	GCNGC	1 cut(s)	112
GsuI	CTGGAG	2 cut(s)	120, 450
HapII	CCGG	2 cut(s)	79, 104
HgaI	GACGC	2 cut(s)	249, 722
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	5 cut(s)	123, 155, 358, 487, 674
HinfI	GANTC	3 cut(s)	163, 674, 720
HpaII	CCGG	2 cut(s)	79, 104
HphI	GGTGA	4 cut(s)	170, 206, 522, 715
Hpy166II	GTNNAC	3 cut(s)	466, 505, 712
Hpy188I	TCNGA	6 cut(s)	280, 515, 545, 550, 634, 682
Hpy188III	TCNNGA	2 cut(s)	304, 410
Hpy8I	GTNNAC	3 cut(s)	466, 505, 712
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4V	TGCA	5 cut(s)	53, 354, 365, 524, 571
HpyF3I	CTNAG	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	5 cut(s)	123, 155, 358, 487, 674
Kzo9I	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
LweI	GCATC	1 cut(s)	352
MabI	ACCWGGT	1 cut(s)	323
MaeI	CTAG	2 cut(s)	18, 653
MaeIII	GTNAC	1 cut(s)	721
MalI	GATC	6 cut(s)	379, 414, 421, 512, 547, 636
MboI	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
MboII	GAAGA	6 cut(s)	36, 39, 47, 55, 387, 741
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	3 cut(s)	419, 545, 634
MluCI	AATT	5 cut(s)	48, 180, 223, 445, 552
MlyI	GAGTC	2 cut(s)	668, 729
MnlI	CCTC	8 cut(s)	139, 274, 277, 368, 425, 553, 594, 688
Mph1103I	ATGCAT	1 cut(s)	356
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	2 cut(s)	156, 488
MspI	CCGG	2 cut(s)	79, 104
MspR9I	CCNGG	4 cut(s)	325, 429, 534, 732
MunI	CAATTG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	4 cut(s)	325, 429, 534, 732
NcoI	CCATGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
NlaIII	CATG	5 cut(s)	123, 155, 358, 487, 674
NlaIV	GGNNCC	2 cut(s)	231, 322
NmuCI	GTSAC	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	356
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	2 cut(s)	668, 728
PpsI	GAGTC	2 cut(s)	668, 728
PshAI	GACNNNNGTC	1 cut(s)	479
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	4 cut(s)	323, 427, 532, 730
PspGI	CCWGG	4 cut(s)	323, 427, 532, 730
PspN4I	GGNNCC	2 cut(s)	231, 322
PspPI	GGNCC	2 cut(s)	148, 230
PsuI	RGATCY	3 cut(s)	419, 545, 634
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	2 cut(s)	156, 488
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	6 cut(s)	377, 412, 419, 510, 545, 634
Sau96I	GGNCC	2 cut(s)	148, 230
SchI	GAGTC	2 cut(s)	668, 729
ScrFI	CCNGG	4 cut(s)	325, 429, 534, 732
SexAI	ACCWGGT	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	352
SinI	GGWCC	2 cut(s)	148, 230
SmiMI	CAYNNNNRTG	2 cut(s)	156, 488
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	5 cut(s)	48, 180, 223, 445, 552
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	2 cut(s)	18, 653
StyD4I	CCNGG	4 cut(s)	323, 427, 532, 730
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	607
TaqI	TCGA	1 cut(s)	58
TasI	AATT	5 cut(s)	48, 180, 223, 445, 552
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	721
Tsp45I	GTSAC	1 cut(s)	721
VpaK11BI	GGWCC	2 cut(s)	148, 230
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	2 cut(s)	18, 653
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.