Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Forward (+)

20505743 .. 20507025

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAGCAATCATCAAACGGTGTTGAAGCAGTTGGAGCCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATTGGAAGAGAGATCTGTCTTGATCTTGCCAAAGCTGGTTGCCAGGTTATTGCAGCAGCTCGTCGTGTTGATCGACTCAACTCTCTCTGCTCTGAAATCAACAGCTTCAGTTCAACTGGAATCCAAGCCGCAGCTCTTGAGTTAGACGTTTCATCAGACGCAGCCACCATTCAAAAAGCGGTCAGGGAAGCTTGGGACATCTTTGGAAAGATCGATGCATTGATCAACAATGCTGGAATCAGAGGCAATGTCAAGTTGAGTTTGGATTTGTCCGAGGACGAATGGGACAACGTCTTCAATACCAACTTAAAGGGACCTTGGTTAGTAGCCAAATATGTTTGTGTTTTAATGCGTGACGCTAAACGTGGTGGCTCGGTGATAAACATCTCATCGGTTGCTGGGGTCCGCAGTATCGTGCCCGGTGGACTTGCATATTCTTGTTCCAAAGGCGGTGTTGACACCATGTCAAGGATGATGGCAATTGAGTTAGGTGTTCACAAGATCAGAGTGAACTCGATCGCACCGGGGCTTTTCAAGTCAGAGATCACACAAGCTCTTATGCAAAAGGAGTGGCTCAAGAATGTGACCGAGAGGACTGTGCCGTTAAAGGTGCAACAGACCATTGATCCAGGGCTTACTTCTCTGGTTCGCTATCTCATTCATGACTCTTCTCAATATATATCCGGGAATACATACATTGTTGATTCCGGTGCTACATTGCCCGGTGTGCCTATCTTTTCATCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

279

Amino Acids

30.09

Weight (kDa)

8.17

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	20 - 220	1.4e-54	short chain dehydrogenase
KR	PF08659	22 - 188	5.8e-12	KR domain
adh_short_C2	PF13561	26 - 269	1.5e-47	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	219, 269, 496, 540
AclWI	GGATC	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	5 cut(s)	25, 204, 263, 388, 625
AhdI	GACNNNNNGTC	1 cut(s)	553
AjnI	CCWGG	2 cut(s)	132, 718
AluBI	AGCT	7 cut(s)	80, 125, 149, 195, 224, 281, 644
AluI	AGCT	7 cut(s)	80, 125, 149, 195, 224, 281, 644
AlwI	GGATC	1 cut(s)	710
ApeKI	GCWGC	4 cut(s)	143, 146, 221, 251
AspS9I	GGNCC	2 cut(s)	404, 493
AsuC2I	CCSGG	4 cut(s)	510, 615, 775, 813
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	404, 493
BaeGI	GKGCMC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	376
BbvI	GCAGC	4 cut(s)	155, 158, 233, 263
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	2 cut(s)	134, 720
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	4 cut(s)	510, 615, 775, 813
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	5 cut(s)	144, 147, 219, 222, 252
BlsI	GCNGC	5 cut(s)	145, 148, 220, 223, 253
Bme1390I	CCNGG	6 cut(s)	134, 510, 615, 720, 775, 813
Bme18I	GGWCC	2 cut(s)	404, 493
BmeRI	GACNNNNNGTC	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	404, 493
BmiI	GGNNCC	3 cut(s)	36, 405, 494
BmrFI	CCNGG	6 cut(s)	134, 510, 615, 720, 775, 813
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	248, 650
BpuMI	CCSGG	4 cut(s)	510, 615, 775, 813
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	5 cut(s)	38, 363, 407, 614, 719
BsaWI	WCCGGW	1 cut(s)	797
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	343, 806
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	134, 720
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	5 cut(s)	38, 363, 407, 614, 719
BseGI	GGATG	1 cut(s)	567
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	2 cut(s)	343, 806
BseNI	ACTGG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	4 cut(s)	155, 158, 233, 263
BseYI	CCCAGC	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	609
BsiSI	CCGG	5 cut(s)	510, 614, 774, 798, 813
BslFI	GGGAC	3 cut(s)	299, 389, 417
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmFI	GGGAC	3 cut(s)	299, 389, 417
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	4 cut(s)	219, 269, 496, 540
BspDI	ATCGAT	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	3 cut(s)	36, 405, 494
BspPI	GGATC	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	343, 806
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	5 cut(s)	38, 363, 407, 614, 719
BssMI	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
BssT1I	CCWWGG	2 cut(s)	38, 407
Bst2UI	CCWGG	2 cut(s)	134, 720
Bst4CI	ACNGT	2 cut(s)	19, 688
Bst6I	CTCTTC	2 cut(s)	91, 763
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	567
BstKTI	GATC	9 cut(s)	105, 115, 163, 303, 315, 594, 609, 636, 718
BstMBI	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
BstMCI	CGRYCG	1 cut(s)	609
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 817
BstNI	CCWGG	2 cut(s)	134, 720
BstSCI	CCNGG	6 cut(s)	132, 508, 613, 718, 773, 811
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	4 cut(s)	155, 158, 233, 263
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	567
CciI	TCATGA	1 cut(s)	751
Cfr13I	GGNCC	2 cut(s)	404, 493
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	2 cut(s)	257, 455
CspCI	CAANNNNNGTGG	2 cut(s)	641, 676
CviAII	CATG	3 cut(s)	39, 553, 752
DpnI	GATC	9 cut(s)	104, 114, 162, 302, 314, 593, 608, 635, 717
DpnII	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
DriI	GACNNNNNGTC	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	91, 763
Eam1105I	GACNNNNNGTC	1 cut(s)	553
EarI	CTCTTC	2 cut(s)	91, 763
Eco130I	CCWWGG	2 cut(s)	38, 407
Eco47I	GGWCC	2 cut(s)	404, 493
Eco57I	CTGAAG	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	132, 718
EcoT14I	CCWWGG	2 cut(s)	38, 407
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	2 cut(s)	38, 407
FaeI	CATG	3 cut(s)	42, 556, 755
FaiI	YATR	9 cut(s)	40, 426, 523, 554, 650, 753, 768, 770, 784
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	3 cut(s)	299, 389, 417
FatI	CATG	3 cut(s)	38, 552, 751
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	144, 147, 219, 222, 252
FokI	GGATG	1 cut(s)	574
Fsp4HI	GCNGC	5 cut(s)	144, 147, 219, 222, 252
GluI	GCNGC	5 cut(s)	144, 147, 219, 222, 252
GsaI	CCCAGC	1 cut(s)	492
HapII	CCGG	5 cut(s)	510, 614, 774, 798, 813
HgaI	GACGC	2 cut(s)	257, 455
Hin1II	CATG	3 cut(s)	42, 556, 755
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	5 cut(s)	165, 210, 327, 755, 794
HpaII	CCGG	5 cut(s)	510, 614, 774, 798, 813
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	5 cut(s)	47, 515, 547, 586, 601
Hpy188I	TCNGA	7 cut(s)	184, 247, 332, 364, 596, 631, 839
Hpy188III	TCNNGA	4 cut(s)	110, 227, 667, 752
Hpy8I	GTNNAC	5 cut(s)	47, 515, 547, 586, 601
Hpy99I	CGWCG	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	19, 688
HpyCH4IV	ACGT	3 cut(s)	237, 381, 454
HpyCH4V	TGCA	5 cut(s)	143, 308, 521, 652, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 817
HpySE526I	ACGT	3 cut(s)	237, 381, 454
Hsp92II	CATG	3 cut(s)	42, 556, 755
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
LmnI	GCTCC	2 cut(s)	34, 77
Lsp1109I	GCAGC	4 cut(s)	155, 158, 233, 263
LweI	GCATC	1 cut(s)	295
MaeII	ACGT	3 cut(s)	237, 381, 454
MaeIII	GTNAC	3 cut(s)	70, 443, 673
MalI	GATC	9 cut(s)	104, 114, 162, 302, 314, 593, 608, 635, 717
MboI	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
MboII	GAAGA	3 cut(s)	108, 376, 750
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	1 cut(s)	570
MlyI	GAGTC	2 cut(s)	159, 749
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	4 cut(s)	94, 326, 358, 675
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	4 cut(s)	51, 398, 437, 695
MspI	CCGG	5 cut(s)	510, 614, 774, 798, 813
MspR9I	CCNGG	6 cut(s)	134, 510, 615, 720, 775, 813
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	2 cut(s)	134, 720
MwoI	GCNNNNNNNGC	2 cut(s)	34, 817
NciI	CCSGG	4 cut(s)	510, 615, 775, 813
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
NlaIII	CATG	3 cut(s)	42, 556, 755
NlaIV	GGNNCC	3 cut(s)	36, 405, 494
NmuCI	GTSAC	3 cut(s)	70, 443, 673
NsiI	ATGCAT	1 cut(s)	310
PagI	TCATGA	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	210, 327, 794
PflFI	GACNNNGTC	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	773
PkrI	GCNGC	5 cut(s)	145, 148, 220, 223, 253
Ple19I	CGATCG	1 cut(s)	609
PleI	GAGTC	2 cut(s)	159, 749
PpsI	GAGTC	2 cut(s)	159, 749
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	132, 718
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	2 cut(s)	132, 718
PspN4I	GGNNCC	3 cut(s)	36, 405, 494
PspPI	GGNCC	2 cut(s)	404, 493
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	380
PvuI	CGATCG	1 cut(s)	609
SaqAI	TTAA	4 cut(s)	51, 398, 437, 695
SatI	GCNGC	5 cut(s)	144, 147, 219, 222, 252
Sau3AI	GATC	9 cut(s)	102, 112, 160, 300, 312, 591, 606, 633, 715
Sau96I	GGNCC	2 cut(s)	404, 493
SchI	GAGTC	2 cut(s)	159, 749
ScrFI	CCNGG	6 cut(s)	134, 510, 615, 720, 775, 813
SduI	GDGCHC	1 cut(s)	510
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	2 cut(s)	404, 493
SmlI	CTYRAG	2 cut(s)	227, 665
SmoI	CTYRAG	2 cut(s)	227, 665
Sse9I	AATT	1 cut(s)	570
SsiI	CCGC	4 cut(s)	219, 269, 496, 540
StyD4I	CCNGG	6 cut(s)	132, 508, 613, 718, 773, 811
StyI	CCWWGG	2 cut(s)	38, 407
TaaI	ACNGT	2 cut(s)	19, 688
TaiI	ACGT	3 cut(s)	240, 384, 457
TaqI	TCGA	3 cut(s)	163, 303, 605
TaqII	GACCGA	1 cut(s)	692
TasI	AATT	1 cut(s)	570
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	3 cut(s)	210, 327, 794
Tru1I	TTAA	4 cut(s)	51, 398, 437, 695
Tru9I	TTAA	4 cut(s)	51, 398, 437, 695
TseFI	GTSAC	3 cut(s)	70, 443, 673
TseI	GCWGC	4 cut(s)	143, 146, 221, 251
Tsp45I	GTSAC	3 cut(s)	70, 443, 673
TspDTI	ATGAA	3 cut(s)	231, 740, 819
Tth111I	GACNNNGTC	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	404, 493
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.