Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Reverse (-)

23181463 .. 23183227

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCAGCAGGTATTGAAGCAATTGGAGCCATGGTGTGAACTTAAAGATAAAGTGGTTCTTGTGACAGGTGCTTCATCTGGTATAGGGAGAGAGATCTGTCTTGATCTATGCAAAGCTGGTTGTAAGATTGTAGCAGCAGCTCGTCGTGTTGATCGTCTCAACTCTCTCTGTTCTGAAATCAACAGCTTTGGTGCAATCGGAGTCCAAGCCGCAGCTCTTGAGCTAGACGTTTCATCAGACGCAGACACTATTCGAAAAGCGGTTAAAGAAGCTTGGGAAATCTTTGGAACGATCGATGTTTTGATTAACAATGCTGGAATCAGAGGCAATGTCAAGTCTAGTTTGGATTTATCAAAAGAAGAATGGGACAAAGTCTTTAGAACCAACTTGACCGGATCTTGGTTAATATCCAAATACGTCTGCCTTTTGATGCGTGACGCTAAGCGTGGGGGCTCGGTGATTAACGTCTCGTCGATCTCTGGGCTTCATCGCGGTTTGTTGCGCGGTGGACTAGCGTATGCTTGTTCCAAAGGTGGTGTTGACACCATGACGAGGATGATGGCTATTGAGTTAGCTGTTTATAAGATCAGAGTGAACTCGATCGCACCTGGGATTTTCAGGTCAGAGATCACACAAGGTCTTTTCCAGAAAGAGTGGCTCGAGAAGGTAACGGAAAAGATTGTACCATTAAAGATGCAACAGACTGTGGATCCGGGGCTTACATCTCTCGTTCGCTATCTCATTCACGATTCTTCCCAATATGTCACCGGGAATACATACATAGTCGATTCCGGAGCTACACTCCCCGGTGTGCCCATTTTTTCTTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

277

Amino Acids

30.17

Weight (kDa)

8.78

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	17 - 218	5.8e-53	short chain dehydrogenase
KR	PF08659	19 - 183	1.5e-11	KR domain
adh_short_C2	PF13561	23 - 267	1.7e-46	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccII	CGCG	2 cut(s)	492, 504
AccIII	TCCGGA	1 cut(s)	791
AciI	CCGC	4 cut(s)	210, 260, 492, 504
AclWI	GGATC	3 cut(s)	403, 704, 717
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	2 cut(s)	399, 552
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	8 cut(s)	116, 140, 186, 215, 223, 272, 575, 797
AluI	AGCT	8 cut(s)	116, 140, 186, 215, 223, 272, 575, 797
Alw26I	GTCTC	2 cut(s)	161, 472
AlwI	GGATC	3 cut(s)	403, 704, 717
Ama87I	CYCGRG	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	791
ApeKI	GCWGC	4 cut(s)	4, 134, 137, 212
AspLEI	GCGC	1 cut(s)	504
AsuC2I	CCSGG	3 cut(s)	714, 769, 807
AsuHPI	GGTGA	2 cut(s)	469, 757
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	816
BamHI	GGATCC	1 cut(s)	709
BanII	GRGCYC	1 cut(s)	455
BbvI	GCAGC	4 cut(s)	16, 146, 149, 224
BccI	CCATC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	609
BcnI	CCSGG	3 cut(s)	714, 769, 807
BcoDI	GTCTC	2 cut(s)	161, 472
BfaI	CTAG	3 cut(s)	224, 339, 512
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	5 cut(s)	5, 135, 138, 210, 213
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	5 cut(s)	6, 136, 139, 211, 214
Bme1390I	CCNGG	4 cut(s)	609, 714, 769, 807
BmeT110I	CYCGRG	1 cut(s)	659
BmiI	GGNNCC	2 cut(s)	27, 711
BmrFI	CCNGG	4 cut(s)	609, 714, 769, 807
BmsI	GCATC	2 cut(s)	420, 684
BplI	GAGNNNNNCTC	2 cut(s)	786, 818
Bpu1102I	GCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	3 cut(s)	714, 769, 807
Bsa29I	ATCGAT	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	29, 608, 713, 805
BsaWI	WCCGGW	2 cut(s)	392, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 552
Bse3DI	GCAATG	1 cut(s)	334
BseAI	TCCGGA	1 cut(s)	791
BseBI	CCWGG	1 cut(s)	609
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	29, 608, 713, 805
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	2 cut(s)	399, 552
BseMI	GCAATG	1 cut(s)	334
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	4 cut(s)	16, 146, 149, 224
Bsh1236I	CGCG	2 cut(s)	492, 504
Bsh1285I	CGRYCG	2 cut(s)	294, 603
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	2 cut(s)	294, 603
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	5 cut(s)	393, 713, 768, 792, 807
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	399, 552
BsmAI	GTCTC	2 cut(s)	161, 472
BsmBI	CGTCTC	2 cut(s)	161, 472
BsmFI	GGGAC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	659
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	455, 816
Bsp13I	TCCGGA	1 cut(s)	791
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	4 cut(s)	210, 260, 492, 504
BspDI	ATCGAT	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	791
BspFNI	CGCG	2 cut(s)	492, 504
BspLI	GGNNCC	2 cut(s)	27, 711
BspPI	GGATC	3 cut(s)	403, 704, 717
BspT104I	TTCGAA	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	29, 608, 713, 805
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	706
BstBI	TTCGAA	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	2 cut(s)	492, 504
BstHHI	GCGC	1 cut(s)	504
BstMAI	GTCTC	2 cut(s)	161, 472
BstMCI	CGRYCG	2 cut(s)	294, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	4 cut(s)	607, 712, 767, 805
BstSLI	GKGCMC	1 cut(s)	816
BstUI	CGCG	2 cut(s)	492, 504
BstV1I	GCAGC	4 cut(s)	16, 146, 149, 224
BstX2I	RGATCY	3 cut(s)	93, 395, 709
BstYI	RGATCY	3 cut(s)	93, 395, 709
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	561
CfoI	GCGC	1 cut(s)	504
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	2 cut(s)	248, 446
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	2 cut(s)	30, 547
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	29
Esp3I	CGTCTC	2 cut(s)	161, 472
FaeI	CATG	2 cut(s)	33, 550
FaiI	YATR	9 cut(s)	31, 83, 109, 519, 548, 582, 762, 778, 782
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	29, 546
Fnu4HI	GCNGC	5 cut(s)	5, 135, 138, 210, 213
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	5 cut(s)	5, 135, 138, 210, 213
FspBI	CTAG	3 cut(s)	224, 339, 512
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	5 cut(s)	5, 135, 138, 210, 213
HapII	CCGG	5 cut(s)	393, 713, 768, 792, 807
HgaI	GACGC	2 cut(s)	248, 446
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	2 cut(s)	33, 550
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	4 cut(s)	201, 318, 749, 788
HpaII	CCGG	5 cut(s)	393, 713, 768, 792, 807
HphI	GGTGA	2 cut(s)	469, 757
Hpy166II	GTNNAC	4 cut(s)	38, 509, 541, 595
Hpy188I	TCNGA	6 cut(s)	175, 200, 238, 323, 590, 625
Hpy188III	TCNNGA	6 cut(s)	101, 218, 646, 661, 746, 792
Hpy8I	GTNNAC	4 cut(s)	38, 509, 541, 595
Hpy99I	CGWCG	2 cut(s)	147, 475
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	3 cut(s)	228, 417, 465
HpyCH4V	TGCA	4 cut(s)	4, 111, 194, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	3 cut(s)	228, 417, 465
Hsp92II	CATG	2 cut(s)	33, 550
HspAI	GCGC	1 cut(s)	502
Kpn2I	TCCGGA	1 cut(s)	791
LmnI	GCTCC	2 cut(s)	25, 794
Lsp1109I	GCAGC	4 cut(s)	16, 146, 149, 224
LweI	GCATC	2 cut(s)	420, 684
MaeI	CTAG	3 cut(s)	224, 339, 512
MaeII	ACGT	3 cut(s)	228, 417, 465
MaeIII	GTNAC	4 cut(s)	61, 434, 667, 763
MboII	GAAGA	3 cut(s)	371, 744, 816
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	3 cut(s)	93, 395, 709
MhlI	GDGCHC	2 cut(s)	455, 816
MluCI	AATT	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	2 cut(s)	317, 546
MroI	TCCGGA	1 cut(s)	791
MseI	TTAA	6 cut(s)	42, 264, 306, 404, 462, 689
MspI	CCGG	5 cut(s)	393, 713, 768, 792, 807
MspR9I	CCNGG	4 cut(s)	609, 714, 769, 807
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	2 cut(s)	492, 504
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	3 cut(s)	714, 769, 807
NcoI	CCATGG	1 cut(s)	29
NlaIII	CATG	2 cut(s)	33, 550
NlaIV	GGNNCC	2 cut(s)	27, 711
NmuCI	GTSAC	3 cut(s)	61, 434, 763
NspV	TTCGAA	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfeI	GAWTC	3 cut(s)	318, 749, 788
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	5 cut(s)	6, 136, 139, 211, 214
Ple19I	CGATCG	2 cut(s)	294, 603
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	27, 711
PsuI	RGATCY	3 cut(s)	93, 395, 709
PsyI	GACNNNGTC	1 cut(s)	371
PvuI	CGATCG	2 cut(s)	294, 603
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
SaqAI	TTAA	6 cut(s)	42, 264, 306, 404, 462, 689
SatI	GCNGC	5 cut(s)	5, 135, 138, 210, 213
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	4 cut(s)	609, 714, 769, 807
SduI	GDGCHC	2 cut(s)	455, 816
SfaNI	GCATC	2 cut(s)	420, 684
Sfr274I	CTCGAG	1 cut(s)	659
SfuI	TTCGAA	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	218, 659
SmoI	CTYRAG	2 cut(s)	218, 659
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	4 cut(s)	210, 260, 492, 504
SspMI	CTAG	3 cut(s)	224, 339, 512
StyD4I	CCNGG	4 cut(s)	607, 712, 767, 805
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	3 cut(s)	231, 420, 468
TaqI	TCGA	6 cut(s)	253, 294, 473, 599, 660, 786
TasI	AATT	1 cut(s)	20
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	3 cut(s)	318, 749, 788
Tru1I	TTAA	6 cut(s)	42, 264, 306, 404, 462, 689
Tru9I	TTAA	6 cut(s)	42, 264, 306, 404, 462, 689
TseFI	GTSAC	3 cut(s)	61, 434, 763
TseI	GCWGC	4 cut(s)	4, 134, 137, 212
Tsp45I	GTSAC	3 cut(s)	61, 434, 763
TspDTI	ATGAA	3 cut(s)	63, 222, 476
TspGWI	ACGGA	1 cut(s)	686
Tth111I	GACNNNGTC	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	659
XspI	CTAG	3 cut(s)	224, 339, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.