Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Forward (+)

9044162 .. 9046752

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g08370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTTTTGTCCAGCAAGTGCAAATATATCACTCCAAATCATGACCGTCCATATCGAAGCCACCAACGGTCAAGATTTAGCAGTATCACTTGCACATGTAACATGATAACATCACATTCACATGTAAGTATCTTCTTCCTTGTTCTATATAATTCATGGCTCATAGTTGACGACAGATTATCAAACATGGAGAATCCTCATCGAGTCTCGGACCACCTGGAGCCCTGGCGCCACCTCCACGGCAAAGTCGTCATGGTCACCGGCGCTTCCTCTGGACTCGGCTGCGACTTGTGCTTAGACTTGGCTAAAGCTGGCTGCAGAATCGTAGCCGCCGCTCGCCGCATCGACCGCCTTCAGTCCGTGTGCGATCAAATCAACCAGCTCTCCATCACCGCTCTTTCTTCATCAGCTTCTGTTGCTGATAATGGGCCTGGAGGAGGCCCGAGGGCCGTGGCTGTGGAGCTGGATGTCAGCGCCGATGGCCCAGCTATCGAGAAGTCTGTGAACAAGGCTTGGGACGCGTTTGGGCGCATCGATGCCCTTGTTAACAATGCCGGTATTAGAGGAAATGTGAGTTCTGCATTGGAACTGTCTGAGGAGGAATGGAATCGTGTTTTCAGGACAAATTTAACGGGTTCCTGGTTGGTATCAAAGTTTGTTGCTATGCGCATGCGAGATGCTGATCAGGGAGGGTCAATTGTCAATATATCCTCCATTGCTGGTCTTAATCGTGGATATCTGCCTGGAGCTACAGCATACAATTGTTCAAAGGCTGGTGTAAACACCTTAACAAAGATGAAAGCTACGATGGAACTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

274

Amino Acids

29.72

Weight (kDa)

8.8

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	668
AccB1I	GGYRCC	1 cut(s)	228
AccBSI	CCGCTC	2 cut(s)	335, 395
AccII	CGCG	1 cut(s)	521
AciI	CCGC	5 cut(s)	330, 333, 340, 349, 393
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflIII	ACRYGT	3 cut(s)	95, 121, 519
AgsI	TTSAA	1 cut(s)	768
AjnI	CCWGG	5 cut(s)	216, 224, 430, 638, 742
AluBI	AGCT	7 cut(s)	311, 382, 410, 463, 488, 749, 803
AluI	AGCT	7 cut(s)	311, 382, 410, 463, 488, 749, 803
Alw26I	GTCTC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	442
AoxI	GGCC	4 cut(s)	428, 439, 447, 481
ApeKI	GCWGC	2 cut(s)	282, 315
ApoI	RAATTY	1 cut(s)	625
AspLEI	GCGC	5 cut(s)	231, 266, 476, 531, 669
AspS9I	GGNCC	5 cut(s)	211, 428, 440, 447, 482
AsuHPI	GGTGA	2 cut(s)	250, 382
AvaI	CYCGRG	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	269, 302
BccI	CCATC	3 cut(s)	395, 473, 802
BceAI	ACGGC	2 cut(s)	256, 434
BciT130I	CCWGG	5 cut(s)	218, 226, 432, 640, 744
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	211
BfmI	CTRYAG	2 cut(s)	316, 750
BfoI	RGCGCY	3 cut(s)	232, 267, 477
BisI	GCNGC	5 cut(s)	283, 316, 330, 333, 340
BlsI	GCNGC	5 cut(s)	284, 317, 331, 334, 341
Bme1390I	CCNGG	5 cut(s)	218, 226, 432, 640, 744
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	442
BmgT120I	GGNCC	5 cut(s)	211, 428, 440, 447, 482
BmiI	GGNNCC	3 cut(s)	222, 230, 637
BmrFI	CCNGG	5 cut(s)	218, 226, 432, 640, 744
BmsI	GCATC	4 cut(s)	351, 526, 540, 667
BpmI	CTGGAG	3 cut(s)	239, 453, 765
Bsa29I	ATCGAT	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	681
BsaHI	GRCGYC	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	224, 238, 443, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	2 cut(s)	260, 554
Bse3DI	GCAATG	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	5 cut(s)	218, 226, 432, 640, 744
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	4 cut(s)	224, 238, 443, 450
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	1 cut(s)	585
BseRI	GAGGAG	2 cut(s)	450, 611
BseXI	GCAGC	2 cut(s)	269, 302
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	4 cut(s)	430, 441, 449, 483
BshNI	GGYRCC	1 cut(s)	228
BshVI	ATCGAT	1 cut(s)	534
BsiEI	CGRYCG	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	261, 555
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	4 cut(s)	430, 441, 449, 483
BsoBI	CYCGRG	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	367, 682
BspACI	CCGC	5 cut(s)	330, 333, 340, 349, 393
BspANI	GGCC	4 cut(s)	430, 441, 449, 483
BspCNI	CTCAG	1 cut(s)	586
BspDI	ATCGAT	1 cut(s)	534
BspFNI	CGCG	1 cut(s)	521
BspHI	TCATGA	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	222, 230, 637
BspMAI	CTGCAG	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	228
BsrBI	CCGCTC	2 cut(s)	335, 395
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	2 cut(s)	260, 554
BssAI	RCCGGY	2 cut(s)	260, 554
BssECI	CCNNGG	4 cut(s)	224, 238, 443, 450
BssMI	GATC	2 cut(s)	367, 682
BssNI	GRCGYC	1 cut(s)	229
Bst2UI	CCWGG	5 cut(s)	218, 226, 432, 640, 744
Bst4CI	ACNGT	3 cut(s)	47, 69, 591
BstACI	GRCGYC	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	313, 337, 671
BstDEI	CTNAG	2 cut(s)	295, 594
BstDSI	CCRYGG	2 cut(s)	238, 450
BstEII	GGTNACC	1 cut(s)	256
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	3 cut(s)	232, 267, 477
BstHHI	GCGC	5 cut(s)	231, 266, 476, 531, 669
BstKTI	GATC	2 cut(s)	370, 685
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	367, 682
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	5 cut(s)	291, 348, 416, 480, 518
BstNI	CCWGG	5 cut(s)	218, 226, 432, 640, 744
BstNSI	RCATGY	3 cut(s)	99, 125, 673
BstPI	GGTNACC	1 cut(s)	256
BstSCI	CCNGG	5 cut(s)	216, 224, 430, 638, 742
BstSFI	CTRYAG	2 cut(s)	316, 750
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	2 cut(s)	269, 302
Bsu15I	ATCGAT	1 cut(s)	534
BsuRI	GGCC	4 cut(s)	430, 441, 449, 483
BsuTUI	ATCGAT	1 cut(s)	534
BtgI	CCRYGG	2 cut(s)	238, 450
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	313, 337, 671
CaiI	CAGNNNCTG	1 cut(s)	413
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	5 cut(s)	231, 266, 476, 531, 669
Cfr10I	RCCGGY	2 cut(s)	260, 554
Cfr13I	GGNCC	5 cut(s)	211, 428, 440, 447, 482
ClaI	ATCGAT	1 cut(s)	534
CseI	GACGC	1 cut(s)	527
CviAII	CATG	8 cut(s)	41, 96, 103, 122, 156, 187, 253, 670
DdeI	CTNAG	2 cut(s)	295, 594
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	2 cut(s)	369, 684
DpnII	GATC	2 cut(s)	367, 682
Eco24I	GRGCYC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoO65I	GGTNACC	1 cut(s)	256
EcoRII	CCWGG	5 cut(s)	216, 224, 430, 638, 742
EcoRV	GATATC	1 cut(s)	737
EcoT38I	GRGCYC	1 cut(s)	225
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	8 cut(s)	44, 99, 106, 125, 159, 190, 256, 673
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	8 cut(s)	40, 95, 102, 121, 155, 186, 252, 669
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	5 cut(s)	283, 316, 330, 333, 340
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	283, 316, 330, 333, 340
FspAI	RTGCGCAY	1 cut(s)	668
FspI	TGCGCA	1 cut(s)	668
GlaI	GCGC	5 cut(s)	230, 265, 475, 530, 668
GluI	GCNGC	5 cut(s)	283, 316, 330, 333, 340
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	3 cut(s)	239, 453, 765
HaeII	RGCGCY	3 cut(s)	232, 267, 477
HaeIII	GGCC	4 cut(s)	430, 441, 449, 483
HapII	CCGG	2 cut(s)	261, 555
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	5 cut(s)	231, 266, 476, 531, 669
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	8 cut(s)	44, 99, 106, 125, 159, 190, 256, 673
Hin6I	GCGC	5 cut(s)	229, 264, 474, 529, 667
HinP1I	GCGC	5 cut(s)	229, 264, 474, 529, 667
HincII	GTYRAC	2 cut(s)	169, 547
HindII	GTYRAC	2 cut(s)	169, 547
HinfI	GANTC	5 cut(s)	193, 204, 276, 321, 607
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	2 cut(s)	261, 555
HphI	GGTGA	2 cut(s)	250, 382
Hpy166II	GTNNAC	4 cut(s)	169, 505, 547, 781
Hpy188I	TCNGA	2 cut(s)	211, 595
Hpy188III	TCNNGA	5 cut(s)	41, 72, 273, 493, 619
Hpy8I	GTNNAC	4 cut(s)	169, 505, 547, 781
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	3 cut(s)	47, 69, 591
HpyCH4V	TGCA	4 cut(s)	21, 93, 318, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	291, 348, 416, 480, 518
HpyF3I	CTNAG	2 cut(s)	295, 594
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	8 cut(s)	44, 99, 106, 125, 159, 190, 256, 673
HspAI	GCGC	5 cut(s)	229, 264, 474, 529, 667
KasI	GGCGCC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	367, 682
LmnI	GCTCC	3 cut(s)	220, 460, 746
Lsp1109I	GCAGC	2 cut(s)	269, 302
LweI	GCATC	4 cut(s)	351, 526, 540, 667
MaeIII	GTNAC	2 cut(s)	98, 256
MalI	GATC	2 cut(s)	369, 684
MbiI	CCGCTC	2 cut(s)	335, 395
MboI	GATC	2 cut(s)	367, 682
MboII	GAAGA	3 cut(s)	124, 127, 393
MfeI	CAATTG	2 cut(s)	696, 760
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	4 cut(s)	151, 625, 696, 760
MluI	ACGCGT	1 cut(s)	519
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	213, 270
MseI	TTAA	4 cut(s)	546, 629, 726, 788
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	2 cut(s)	261, 555
MspR9I	CCNGG	5 cut(s)	218, 226, 432, 640, 744
MunI	CAATTG	2 cut(s)	696, 760
MvaI	CCWGG	5 cut(s)	218, 226, 432, 640, 744
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	5 cut(s)	291, 348, 416, 480, 518
NarI	GGCGCC	1 cut(s)	229
NdeII	GATC	2 cut(s)	367, 682
NlaIII	CATG	8 cut(s)	44, 99, 106, 125, 159, 190, 256, 673
NlaIV	GGNNCC	3 cut(s)	222, 230, 637
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	256
NsbI	TGCGCA	1 cut(s)	668
NspI	RCATGY	3 cut(s)	99, 125, 673
PaeI	GCATGC	1 cut(s)	673
PagI	TCATGA	1 cut(s)	40
PciI	ACATGT	2 cut(s)	95, 121
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	193, 321, 607
PkrI	GCNGC	5 cut(s)	284, 317, 331, 334, 341
PleI	GAGTC	2 cut(s)	212, 270
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	2 cut(s)	212, 270
PscI	ACATGT	2 cut(s)	95, 121
Psp6I	CCWGG	5 cut(s)	216, 224, 430, 638, 742
PspEI	GGTNACC	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	5 cut(s)	216, 224, 430, 638, 742
PspN4I	GGNNCC	3 cut(s)	222, 230, 637
PspPI	GGNCC	5 cut(s)	211, 428, 440, 447, 482
PstI	CTGCAG	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	4 cut(s)	546, 629, 726, 788
SatI	GCNGC	5 cut(s)	283, 316, 330, 333, 340
Sau3AI	GATC	2 cut(s)	367, 682
Sau96I	GGNCC	5 cut(s)	211, 428, 440, 447, 482
SchI	GAGTC	2 cut(s)	213, 270
ScrFI	CCNGG	5 cut(s)	218, 226, 432, 640, 744
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	4 cut(s)	351, 526, 540, 667
SfcI	CTRYAG	2 cut(s)	316, 750
SfoI	GGCGCC	1 cut(s)	230
SgrAI	CRCCGGYG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	120
SphI	GCATGC	1 cut(s)	673
Sse9I	AATT	4 cut(s)	151, 625, 696, 760
SsiI	CCGC	5 cut(s)	330, 333, 340, 349, 393
SspDI	GGCGCC	1 cut(s)	228
StyD4I	CCNGG	5 cut(s)	216, 224, 430, 638, 742
TaaI	ACNGT	3 cut(s)	47, 69, 591
TaqI	TCGA	5 cut(s)	55, 202, 345, 492, 534
TasI	AATT	4 cut(s)	151, 625, 696, 760
TauI	GCSGC	3 cut(s)	332, 335, 342
TfiI	GAWTC	3 cut(s)	193, 321, 607
Tru1I	TTAA	4 cut(s)	546, 629, 726, 788
Tru9I	TTAA	4 cut(s)	546, 629, 726, 788
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	282, 315
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	144, 393, 812
TspGWI	ACGGA	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	435
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	3 cut(s)	99, 125, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.