Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Forward (+)

52407473 .. 52407824

Gene Structure 352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGTCATGGCTGTGGAGTTGGGGTACACAAGATCAGAGTGAATGCAATATCACCTGGGCTTTTCAGATCTGAAATTACCGAGGGTCTTATGCAAAAAGATTGGCTACACAATGTGGCTATGAGAGCTGTCCCTTTGAGAACATATGGCACTTCAGATCCAGCATTGACATCACTAGCTCGTTATTTGATACATGACTCCTCTGAATATGTCTCGGGCAATATTTACATTGTTGACGCAGGAGTCACCTTGCCAGGTGTCCCAATTTTCTCTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

93

Amino Acids

10.03

Weight (kDa)

6.89

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	8 - 83	5.5e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	27
AjnI	CCWGG	2 cut(s)	55, 253
AjuI	GAANNNNNNNTTGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	128, 179
AluI	AGCT	2 cut(s)	128, 179
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	45, 238
AvaI	CYCGRG	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	57, 255
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	176
BglII	AGATCT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	57, 255
BmeT110I	CYCGRG	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	57, 255
BsaJI	CCNNGG	2 cut(s)	56, 81
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
BseBI	CCWGG	2 cut(s)	57, 255
BseDI	CCNNGG	2 cut(s)	56, 81
BseRI	GAGGAG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	116, 245
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	116, 245
BsmI	GAATGC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	33, 68, 157
BspPI	GGATC	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	56, 81
BssMI	GATC	3 cut(s)	33, 68, 157
Bst2UI	CCWGG	2 cut(s)	57, 255
Bst6I	CTCTTC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	36, 71, 160
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	33, 68, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	57, 255
BstSCI	CCNGG	2 cut(s)	55, 253
BstX2I	RGATCY	2 cut(s)	68, 157
BstYI	RGATCY	2 cut(s)	68, 157
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	8, 194
CviJI	RGCY	6 cut(s)	12, 61, 106, 119, 128, 179
CviKI_1	RGCY	6 cut(s)	12, 61, 106, 119, 128, 179
CviQI	GTAC	1 cut(s)	26
DpnI	GATC	3 cut(s)	35, 70, 159
DpnII	GATC	3 cut(s)	33, 68, 157
DraIII	CACNNNGTG	1 cut(s)	115
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	55, 253
FaeI	CATG	2 cut(s)	11, 197
FaiI	YATR	7 cut(s)	9, 92, 122, 145, 147, 195, 210
FaqI	GGGAC	2 cut(s)	116, 245
FatI	CATG	2 cut(s)	7, 193
FauNDI	CATATG	1 cut(s)	145
FspBI	CTAG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	11, 197
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	197, 243
HphI	GGTGA	2 cut(s)	45, 238
Hpy166II	GTNNAC	2 cut(s)	28, 235
Hpy188I	TCNGA	5 cut(s)	38, 68, 73, 157, 205
Hpy8I	GTNNAC	2 cut(s)	28, 235
HpyCH4V	TGCA	2 cut(s)	47, 94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	11, 197
Kzo9I	GATC	3 cut(s)	33, 68, 157
LpnPI	CCDG	6 cut(s)	42, 69, 174, 225, 240, 267
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	35, 70, 159
MboI	GATC	3 cut(s)	33, 68, 157
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	2 cut(s)	68, 157
MluCI	AATT	2 cut(s)	75, 264
MlyI	GAGTC	2 cut(s)	191, 252
MnlI	CCTC	2 cut(s)	76, 211
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	57, 255
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	2 cut(s)	57, 255
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	3 cut(s)	33, 68, 157
NlaIII	CATG	2 cut(s)	11, 197
NmuCI	GTSAC	1 cut(s)	244
PctI	GAATGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	191, 251
PpsI	GAGTC	2 cut(s)	191, 251
Psp6I	CCWGG	2 cut(s)	55, 253
PspGI	CCWGG	2 cut(s)	55, 253
PsuI	RGATCY	2 cut(s)	68, 157
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	33, 68, 157
SchI	GAGTC	2 cut(s)	191, 252
ScrFI	CCNGG	2 cut(s)	57, 255
SetI	ASST	5 cut(s)	58, 130, 181, 251, 259
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	75, 264
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	55, 253
TasI	AATT	2 cut(s)	75, 264
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.