Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Reverse (-)

16952521 .. 16953780

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAGCAATCATCAAACTTTGACTTTTGTTTTTGGAGAGAAGGAGGTGTTGAAGCAATTGGAGCCGTGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAGATCTGTCTTGATCTAGGCAAAGCTGGTTGTAAGATTATTGCAGTAGCTCGTCGTGTCGATCGTCTCAACTCTCTCTGCTCTGAAATCAACAGCTCCAGTTCAACTGGAATCCAAGCCGCGGCTCTTAAGCTAGACGTTACATCAGACGCAGCCACCATTCAAAAAGTGGTTCAGGGAGCTTGGGGAATCTTTGGAAAGATCGATGCGTTGATCAACAATGCCGGGATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAAAGGAAGAATGGGACAACGTCTTCAAGACCAACTTAACGGGACCTTGGTTAGTATCTAAATATGTTTGTGTTCTAATGCGTGATGCTAAACTAGGTGGCTCGGTGATAAACATCTCATCGATTGCCGGGATTCGCGGTATATTGCCCGGTGCACTTGCATATGCTTGTTCCAAAATAGGTGTTGATACCATGTCAAAGATGATGGCAGTTGAGTTAGGTGTGCACAAGATCAGAGTGAACTCGATTGCGCCCGGGATTTTCAAGTCAGAGATCACACAAGGTCTTATGCAAAAGGAGTGGTTCAAGAATGTGACCGAGAGGACTGTACCATTAAAGCTGCAACAGACCGTTGATCCAGGGATAACTTCTCTCGTACGCTATCTCATCCATGACTCTTCTCAATATATATCCGGGAATACATATATTGTTGATTCCGGAGCTACATTGCCCGGTGTGCCCATCTTTTCATCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

288

Amino Acids

30.99

Weight (kDa)

8.96

Isoelectric Point (pI)

23.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	29 - 229	5.3e-53	short chain dehydrogenase
KR	PF08659	31 - 197	6.8e-11	KR domain
adh_short_C2	PF13561	35 - 278	1.3e-46	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	248, 525
AccIII	TCCGGA	1 cut(s)	824
AciI	CCGC	3 cut(s)	246, 248, 525
AclWI	GGATC	2 cut(s)	362, 737
AfaI	GTAC	2 cut(s)	717, 765
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	6 cut(s)	52, 231, 290, 415, 652, 694
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	8 cut(s)	107, 152, 176, 222, 259, 308, 727, 830
AluI	AGCT	8 cut(s)	107, 152, 176, 222, 259, 308, 727, 830
Alw21I	GWGCWC	2 cut(s)	544, 615
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	2 cut(s)	540, 611
AlwI	GGATC	2 cut(s)	362, 737
Ama87I	CYCGRG	1 cut(s)	641
Aor13HI	TCCGGA	1 cut(s)	824
ApaLI	GTGCAC	2 cut(s)	540, 611
ApeKI	GCWGC	2 cut(s)	278, 727
AspLEI	GCGC	1 cut(s)	640
AspS9I	GGNCC	1 cut(s)	431
AsuC2I	CCSGG	7 cut(s)	352, 517, 537, 642, 643, 802, 840
AsuHPI	GGTGA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	3 cut(s)	544, 615, 849
BbsI	GAAGAC	1 cut(s)	403
Bbv12I	GWGCWC	2 cut(s)	544, 615
BbvI	GCAGC	2 cut(s)	290, 714
BccI	CCATC	2 cut(s)	586, 857
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	747
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	7 cut(s)	352, 517, 537, 642, 643, 802, 840
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	143, 260, 482
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	4 cut(s)	246, 249, 279, 728
BlsI	GCNGC	4 cut(s)	247, 250, 280, 729
Bme1390I	CCNGG	8 cut(s)	352, 517, 537, 642, 643, 747, 802, 840
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	63, 432
BmrFI	CCNGG	8 cut(s)	352, 517, 537, 642, 643, 747, 802, 840
BmsI	GCATC	2 cut(s)	322, 463
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	208
BpuMI	CCSGG	7 cut(s)	352, 517, 537, 642, 643, 802, 840
Bsa29I	ATCGAT	2 cut(s)	330, 509
BsaBI	GATNNNNATC	1 cut(s)	500
BsaJI	CCNNGG	5 cut(s)	65, 246, 434, 641, 746
BsaWI	WCCGGW	1 cut(s)	824
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	225, 238
Bse3DI	GCAATG	2 cut(s)	370, 833
Bse8I	GATNNNNATC	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	824
BseBI	CCWGG	1 cut(s)	747
BseCI	ATCGAT	2 cut(s)	330, 509
BseDI	CCNNGG	5 cut(s)	65, 246, 434, 641, 746
BseGI	GGATG	1 cut(s)	774
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	2 cut(s)	370, 833
BseNI	ACTGG	2 cut(s)	225, 238
BseSI	GKGCMC	3 cut(s)	544, 615, 849
BseXI	GCAGC	2 cut(s)	290, 714
Bsh1236I	CGCG	2 cut(s)	248, 525
Bsh1285I	CGRYCG	1 cut(s)	190
BshVI	ATCGAT	2 cut(s)	330, 509
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	544, 615
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	7 cut(s)	351, 516, 537, 642, 801, 825, 840
BsiWI	CGTACG	1 cut(s)	763
BslFI	GGGAC	2 cut(s)	416, 444
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	416, 444
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	544, 615, 849
Bsp13I	TCCGGA	1 cut(s)	824
Bsp143I	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
BspACI	CCGC	3 cut(s)	246, 248, 525
BspDI	ATCGAT	2 cut(s)	330, 509
BspEI	TCCGGA	1 cut(s)	824
BspFNI	CGCG	2 cut(s)	248, 525
BspLI	GGNNCC	2 cut(s)	63, 432
BspPI	GGATC	2 cut(s)	362, 737
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	370, 833
BsrI	ACTGG	2 cut(s)	225, 238
BssECI	CCNNGG	5 cut(s)	65, 246, 434, 641, 746
BssMI	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	2 cut(s)	715, 739
Bst6I	CTCTTC	2 cut(s)	118, 790
BstAFI	CTTAAG	1 cut(s)	254
BstDSI	CCRYGG	2 cut(s)	65, 246
BstF5I	GGATG	1 cut(s)	774
BstFNI	CGCG	2 cut(s)	248, 525
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	9 cut(s)	132, 142, 190, 330, 342, 357, 621, 663, 745
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 844
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	8 cut(s)	350, 515, 535, 640, 641, 745, 800, 838
BstSLI	GKGCMC	3 cut(s)	544, 615, 849
BstUI	CGCG	2 cut(s)	248, 525
BstV1I	GCAGC	2 cut(s)	290, 714
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
Bsu15I	ATCGAT	2 cut(s)	330, 509
BsuTUI	ATCGAT	2 cut(s)	330, 509
BtgI	CCRYGG	2 cut(s)	65, 246
BtsCI	GGATG	1 cut(s)	774
CfoI	GCGC	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	431
Cfr42I	CCGCGG	1 cut(s)	249
Cfr9I	CCCGGG	1 cut(s)	641
ClaI	ATCGAT	2 cut(s)	330, 509
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	716, 764
CspCI	CAANNNNNGTGG	2 cut(s)	668, 703
CviAII	CATG	2 cut(s)	580, 779
CviQI	GTAC	2 cut(s)	716, 764
DpnI	GATC	9 cut(s)	131, 141, 189, 329, 341, 356, 620, 662, 744
DpnII	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
Eam1104I	CTCTTC	2 cut(s)	118, 790
EarI	CTCTTC	2 cut(s)	118, 790
Eco130I	CCWWGG	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	2 cut(s)	583, 782
FalI	AAGNNNNNCTT	4 cut(s)	78, 110, 407, 439
FaqI	GGGAC	2 cut(s)	416, 444
FatI	CATG	2 cut(s)	579, 778
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	246, 249, 279, 728
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	4 cut(s)	246, 249, 279, 728
FspBI	CTAG	3 cut(s)	143, 260, 482
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	4 cut(s)	246, 249, 279, 728
GsuI	CTGGAG	1 cut(s)	208
HapII	CCGG	7 cut(s)	351, 516, 537, 642, 801, 825, 840
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	2 cut(s)	583, 782
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HinfI	GANTC	5 cut(s)	237, 315, 520, 782, 821
HpaII	CCGG	7 cut(s)	351, 516, 537, 642, 801, 825, 840
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	4 cut(s)	74, 542, 613, 628
Hpy188I	TCNGA	6 cut(s)	211, 274, 359, 623, 658, 866
Hpy188III	TCNNGA	4 cut(s)	137, 415, 694, 825
Hpy8I	GTNNAC	4 cut(s)	74, 542, 613, 628
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	715, 739
HpyCH4IV	ACGT	2 cut(s)	264, 408
HpyCH4V	TGCA	6 cut(s)	170, 542, 548, 613, 679, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 844
HpySE526I	ACGT	2 cut(s)	264, 408
Hsp92II	CATG	2 cut(s)	583, 782
HspAI	GCGC	1 cut(s)	638
Kpn2I	TCCGGA	1 cut(s)	824
Ksp22I	TGATCA	1 cut(s)	339
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
LmnI	GCTCC	5 cut(s)	61, 104, 227, 305, 827
Lsp1109I	GCAGC	2 cut(s)	290, 714
LweI	GCATC	2 cut(s)	322, 463
MaeI	CTAG	3 cut(s)	143, 260, 482
MaeII	ACGT	2 cut(s)	264, 408
MaeIII	GTNAC	3 cut(s)	97, 265, 700
MalI	GATC	9 cut(s)	131, 141, 189, 329, 341, 356, 620, 662, 744
MboI	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
MboII	GAAGA	4 cut(s)	135, 403, 407, 777
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	3 cut(s)	544, 615, 849
MluCI	AATT	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	776
MnlI	CCTC	4 cut(s)	37, 121, 353, 702
MroI	TCCGGA	1 cut(s)	824
MseI	TTAA	4 cut(s)	78, 255, 425, 722
MspA1I	CMGCKG	1 cut(s)	248
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	7 cut(s)	351, 516, 537, 642, 801, 825, 840
MspR9I	CCNGG	8 cut(s)	352, 517, 537, 642, 643, 747, 802, 840
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	2 cut(s)	248, 525
MwoI	GCNNNNNNNGC	2 cut(s)	61, 844
NciI	CCSGG	7 cut(s)	352, 517, 537, 642, 643, 802, 840
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
NlaIII	CATG	2 cut(s)	583, 782
NlaIV	GGNNCC	2 cut(s)	63, 432
NmuCI	GTSAC	2 cut(s)	97, 700
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	237, 315, 520, 821
Pfl23II	CGTACG	1 cut(s)	763
PflFI	GACNNNGTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	800
PkrI	GCNGC	4 cut(s)	247, 250, 280, 729
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	776
PpuMI	RGGWCCY	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspLI	CGTACG	1 cut(s)	763
PspN4I	GGNNCC	2 cut(s)	63, 432
PspPI	GGNCC	1 cut(s)	431
PspPPI	RGGWCCY	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	129
PsyI	GACNNNGTC	1 cut(s)	407
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	2 cut(s)	717, 765
RsaNI	GTAC	2 cut(s)	716, 764
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	78, 255, 425, 722
SatI	GCNGC	4 cut(s)	246, 249, 279, 728
Sau3AI	GATC	9 cut(s)	129, 139, 187, 327, 339, 354, 618, 660, 742
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	8 cut(s)	352, 517, 537, 642, 643, 747, 802, 840
SduI	GDGCHC	3 cut(s)	544, 615, 849
SfaNI	GCATC	2 cut(s)	322, 463
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	431
SmaI	CCCGGG	1 cut(s)	643
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	246, 248, 525
SspMI	CTAG	3 cut(s)	143, 260, 482
StyD4I	CCNGG	8 cut(s)	350, 515, 535, 640, 641, 745, 800, 838
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	715, 739
TaiI	ACGT	2 cut(s)	267, 411
TaqI	TCGA	5 cut(s)	186, 330, 374, 509, 632
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	1 cut(s)	56
TauI	GCSGC	2 cut(s)	248, 251
TfiI	GAWTC	4 cut(s)	237, 315, 520, 821
Tru1I	TTAA	4 cut(s)	78, 255, 425, 722
Tru9I	TTAA	4 cut(s)	78, 255, 425, 722
TseFI	GTSAC	2 cut(s)	97, 700
TseI	GCWGC	2 cut(s)	278, 727
Tsp45I	GTSAC	2 cut(s)	97, 700
TspDTI	ATGAA	1 cut(s)	846
TspMI	CCCGGG	1 cut(s)	641
Tth111I	GACNNNGTC	1 cut(s)	407
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	2 cut(s)	540, 611
VpaK11BI	GGWCC	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	641
XspI	CTAG	3 cut(s)	143, 260, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.