Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002630

Physical Location & Seq

Genomic Coordinates Forward (+)

20502443 .. 20503868

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAGCAATCATCAAACTCAGGTGTTGAAGCTATTGGAGCCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATTGGAAGAGAGATCTGTCTTGATCTTGCCAAAGCTGGTTGCCAGGTTATTGCAGCAGCTCGTCGTGTTGATCGACTCAACTCTCTCTGCTCTGAAATCAACAGCTTCAGTTCAACTGGAATCCAAGCCGCAGCTCTTGAGTTAGACGTTTCATCAGACGCAGCCACCATTCAAAAAGCGGTCAGGGAAGCTTGGGACATCTTTGGAAAGATCGATGCATTGATCAACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAGGACGAATGGGACAACGTCTTCAAGACCAACTTAAAGGGTCCTTGGTTAGTATCCAAACATGTTTGTATGTTAATGCGTGACGCTAAACGAGGTGGCTCGGTGATAAACATCTCATCGATCGCCGGGATCCGGGGTATGTTGCCCGGTGGACTTGCTTATGCTTGTTCCAAAGGCGGTGTTGACACCATGTCAAGGATGATGGCACTTGAGTTAGGTGTTCATAAGATCAGAGTGAACTCGATCGCACCGGGGCTTTTCAAGTCAGAGATCACACAAGGTCTTATGCAAAAGGAGTGGCTCAAGAATGTTACCGAGAGGACTGTGCCGTTAAAGGTGCAACAGACCGTTGATCCAGGGCTTACTTCTCTGGTTCGCTATCTCATTCATGACTCTTCTCAATATATATCCGGGAATACATACATTGTTGATTCCGGTGCTACATTGCCCGGTGTGCCTATCTTTTCATCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

280

Amino Acids

30.2

Weight (kDa)

8.49

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	21 - 221	5.7e-55	short chain dehydrogenase
KR	PF08659	23 - 189	5.1e-13	KR domain
adh_short_C2	PF13561	27 - 270	2.2e-48	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62610 AT1G62610 AT1G62610 AT1G62610 AT1G63380 AT1G63380 AT1G63380 AT1G63380 AT2G17845 AT3G46170 AT3G55290 AT3G55290 AT3G55310
fragaria_vesca	FvH4_5g32470
malus_domestica	MD12G1006600.v1.1 MD12G1094700.v1.1 MD15G1420800.v1.1 MD15G1420900.v1.1
prunus_persica	Prupe.7G031300_v2.0.a1 Prupe.7G031300_v2.0.a1
pyrus_communis	pycom13g09640 pycom14g08370
rosa_chinensis	RchiOBHm_Chr7g0229021 RchiOBHm_Chr7g0229061
rosa_laevigata	RLG00000001534
rosa_multiflora	Rmu_sc0000271.1_g000029 Rmu_sc0000271.1_g000037 Rmu_sc0009986.1_g000002
rosa_roxburghii	Rroxscaffold_3G00230780
rosa_rugosa	Rorug07G0254900 Rorug07G0255400
rosa_samantha	Rh7AG406300 Rh7AG406400 Rh7BG385600 Rh7BG385700 Rh7CG423900 Rh7CG424100 Rh7DG400700
rosa_wichuraiana	Rw7G033710 Rw7G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	222, 272, 543
AclWI	GGATC	3 cut(s)	490, 503, 713
AcuI	CTGAAG	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	498, 561
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	28, 207, 266, 391, 628
AhdI	GACNNNNNGTC	1 cut(s)	556
AjnI	CCWGG	2 cut(s)	135, 721
AluBI	AGCT	7 cut(s)	31, 83, 128, 152, 198, 227, 284
AluI	AGCT	7 cut(s)	31, 83, 128, 152, 198, 227, 284
AlwI	GGATC	3 cut(s)	490, 503, 713
ApeKI	GCWGC	4 cut(s)	146, 149, 224, 254
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	6 cut(s)	493, 500, 513, 618, 778, 816
AsuHPI	GGTGA	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	407
BamHI	GGATCC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	158, 161, 236, 266
BccI	CCATC	1 cut(s)	562
BceAI	ACGGC	1 cut(s)	679
BciT130I	CCWGG	2 cut(s)	137, 723
BciVI	GTATCC	1 cut(s)	430
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	6 cut(s)	493, 500, 513, 618, 778, 816
BfuI	GTATCC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	5 cut(s)	147, 150, 222, 225, 255
BlsI	GCNGC	5 cut(s)	148, 151, 223, 226, 256
Bme1390I	CCNGG	8 cut(s)	137, 493, 500, 513, 618, 723, 778, 816
Bme18I	GGWCC	1 cut(s)	407
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	3 cut(s)	39, 408, 497
BmrFI	CCNGG	8 cut(s)	137, 493, 500, 513, 618, 723, 778, 816
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	251, 596, 653
BpuMI	CCSGG	6 cut(s)	493, 500, 513, 618, 778, 816
Bsa29I	ATCGAT	2 cut(s)	306, 485
BsaBI	GATNNNNATC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	41, 410, 499, 617, 722
BsaWI	WCCGGW	1 cut(s)	800
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 561
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	2 cut(s)	346, 809
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	137, 723
BseCI	ATCGAT	2 cut(s)	306, 485
BseDI	CCNNGG	5 cut(s)	41, 410, 499, 617, 722
BseGI	GGATG	1 cut(s)	570
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	2 cut(s)	498, 561
BseMI	GCAATG	2 cut(s)	346, 809
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	4 cut(s)	158, 161, 236, 266
Bsh1285I	CGRYCG	2 cut(s)	489, 612
BshVI	ATCGAT	2 cut(s)	306, 485
BsiEI	CGRYCG	2 cut(s)	489, 612
BsiSI	CCGG	7 cut(s)	492, 499, 513, 617, 777, 801, 816
BslFI	GGGAC	2 cut(s)	302, 392
BslI	CCNNNNNNNGG	2 cut(s)	498, 561
BsmFI	GGGAC	2 cut(s)	302, 392
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	3 cut(s)	222, 272, 543
BspCNI	CTCAG	1 cut(s)	31
BspDI	ATCGAT	2 cut(s)	306, 485
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	39, 408, 497
BspPI	GGATC	3 cut(s)	490, 503, 713
BsrDI	GCAATG	2 cut(s)	346, 809
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	5 cut(s)	41, 410, 499, 617, 722
BssT1I	CCWWGG	2 cut(s)	41, 410
Bst2UI	CCWGG	2 cut(s)	137, 723
Bst4CI	ACNGT	2 cut(s)	691, 715
Bst6I	CTCTTC	2 cut(s)	94, 766
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	570
BstMCI	CGRYCG	2 cut(s)	489, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 820
BstNI	CCWGG	2 cut(s)	137, 723
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	8 cut(s)	135, 491, 498, 511, 616, 721, 776, 814
BstV1I	GCAGC	4 cut(s)	158, 161, 236, 266
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	105, 495
BstYI	RGATCY	2 cut(s)	105, 495
Bsu15I	ATCGAT	2 cut(s)	306, 485
BsuI	GTATCC	1 cut(s)	430
BsuTUI	ATCGAT	2 cut(s)	306, 485
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	570
CciI	TCATGA	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	2 cut(s)	306, 485
CseI	GACGC	2 cut(s)	260, 458
CspCI	CAANNNNNGTGG	2 cut(s)	644, 679
CviAII	CATG	4 cut(s)	42, 428, 556, 755
DdeI	CTNAG	1 cut(s)	18
DriI	GACNNNNNGTC	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	94, 766
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EarI	CTCTTC	2 cut(s)	94, 766
Eco130I	CCWWGG	2 cut(s)	41, 410
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	135, 721
EcoT14I	CCWWGG	2 cut(s)	41, 410
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	2 cut(s)	41, 410
FaeI	CATG	4 cut(s)	45, 431, 559, 758
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 383, 415
FaqI	GGGAC	2 cut(s)	302, 392
FatI	CATG	4 cut(s)	41, 427, 555, 754
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	147, 150, 222, 225, 255
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	5 cut(s)	147, 150, 222, 225, 255
GluI	GCNGC	5 cut(s)	147, 150, 222, 225, 255
HapII	CCGG	7 cut(s)	492, 499, 513, 617, 777, 801, 816
HgaI	GACGC	2 cut(s)	260, 458
Hin1II	CATG	4 cut(s)	45, 431, 559, 758
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	5 cut(s)	168, 213, 330, 758, 797
HpaII	CCGG	7 cut(s)	492, 499, 513, 617, 777, 801, 816
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	4 cut(s)	50, 518, 550, 604
Hpy188I	TCNGA	7 cut(s)	187, 250, 335, 367, 599, 634, 842
Hpy188III	TCNNGA	5 cut(s)	113, 230, 391, 670, 755
Hpy8I	GTNNAC	4 cut(s)	50, 518, 550, 604
Hpy99I	CGWCG	1 cut(s)	159
HpyCH4III	ACNGT	2 cut(s)	691, 715
HpyCH4IV	ACGT	2 cut(s)	240, 384
HpyCH4V	TGCA	4 cut(s)	146, 311, 655, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 820
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	240, 384
Hsp92II	CATG	4 cut(s)	45, 431, 559, 758
Ksp22I	TGATCA	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	37, 80
Lsp1109I	GCAGC	4 cut(s)	158, 161, 236, 266
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	2 cut(s)	240, 384
MaeIII	GTNAC	3 cut(s)	73, 446, 676
MboII	GAAGA	3 cut(s)	111, 379, 753
MflI	RGATCY	2 cut(s)	105, 495
MlyI	GAGTC	2 cut(s)	162, 752
MnlI	CCTC	5 cut(s)	97, 329, 361, 452, 678
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	4 cut(s)	54, 401, 440, 698
MspI	CCGG	7 cut(s)	492, 499, 513, 617, 777, 801, 816
MspR9I	CCNGG	8 cut(s)	137, 493, 500, 513, 618, 723, 778, 816
MvaI	CCWGG	2 cut(s)	137, 723
MwoI	GCNNNNNNNGC	2 cut(s)	37, 820
NciI	CCSGG	6 cut(s)	493, 500, 513, 618, 778, 816
NcoI	CCATGG	1 cut(s)	41
NlaIII	CATG	4 cut(s)	45, 431, 559, 758
NlaIV	GGNNCC	3 cut(s)	39, 408, 497
NmuCI	GTSAC	2 cut(s)	73, 446
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	431
PagI	TCATGA	1 cut(s)	754
PciI	ACATGT	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	213, 330, 797
PflFI	GACNNNGTC	1 cut(s)	383
PfoI	TCCNGGA	1 cut(s)	776
PkrI	GCNGC	5 cut(s)	148, 151, 223, 226, 256
Ple19I	CGATCG	2 cut(s)	489, 612
PleI	GAGTC	2 cut(s)	162, 752
PpsI	GAGTC	2 cut(s)	162, 752
PpuMI	RGGWCCY	1 cut(s)	407
PscI	ACATGT	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	135, 721
PspGI	CCWGG	2 cut(s)	135, 721
PspN4I	GGNNCC	3 cut(s)	39, 408, 497
PspPI	GGNCC	1 cut(s)	407
PspPPI	RGGWCCY	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	105, 495
PsyI	GACNNNGTC	1 cut(s)	383
PvuI	CGATCG	2 cut(s)	489, 612
SaqAI	TTAA	4 cut(s)	54, 401, 440, 698
SatI	GCNGC	5 cut(s)	147, 150, 222, 225, 255
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	2 cut(s)	162, 752
ScrFI	CCNGG	8 cut(s)	137, 493, 500, 513, 618, 723, 778, 816
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	407
SmlI	CTYRAG	3 cut(s)	230, 575, 668
SmoI	CTYRAG	3 cut(s)	230, 575, 668
SsiI	CCGC	3 cut(s)	222, 272, 543
StyD4I	CCNGG	8 cut(s)	135, 491, 498, 511, 616, 721, 776, 814
StyI	CCWWGG	2 cut(s)	41, 410
TaaI	ACNGT	2 cut(s)	691, 715
TaiI	ACGT	2 cut(s)	243, 387
TaqI	TCGA	5 cut(s)	166, 306, 350, 485, 608
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	3 cut(s)	213, 330, 797
Tru1I	TTAA	4 cut(s)	54, 401, 440, 698
Tru9I	TTAA	4 cut(s)	54, 401, 440, 698
TseFI	GTSAC	2 cut(s)	73, 446
TseI	GCWGC	4 cut(s)	146, 149, 224, 254
Tsp45I	GTSAC	2 cut(s)	73, 446
TspDTI	ATGAA	4 cut(s)	234, 578, 743, 822
Tth111I	GACNNNGTC	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	407
XceI	RCATGY	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.