Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013298

Physical Location & Seq

Genomic Coordinates Forward (+)

41806657 .. 41810072

Gene Structure 3416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG385900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCCTTCATTAAATAGCTATCAATTCAGTTGGGGAAGAGTTCCGGGTTTTCACCTCACATTCTTATTTATTATTCCCAGCAACTGCTCTCTACCTCTCGAACCTCACCAACTCTCTCTCTCTCTCTCTAAATATTTACAATGCCATCTTCATTTTCCCGGAAAAGCTCTTGACTTTCTTCCACTTCCGGCCACAATTTCCCAAAACAGTTTCTGGGTTTTGCTCACAGCTCGGTTTCCAGTAATGGGTAATCGGTTTATTTGCATGTCTAAGAAGGAACCCAAAGAGAATGGATCCAGAAGTAAGAGGGTGAACCGCTCACAGAGGAAAATGCTTGCAGAAGATGAGTTATTGCACAGGCAAGCTCTGTCTATGGCTATTCATCAGCACCAACTGTCTCAGAGGTTTGATGGATCCATGTCTAGGAGAATTAATGGCTCTACCAGCTCTAGGAGAACCACTCTACCCGAATCAGTAGCAAAGCAGGTACCTGAAAATTTGGATAACCTTACGACAAAAAAGTTTATTTTAATACATGGAGAAGGGTTTGGAGCATGGTGTTGGTACAAAACAATTACTCTGCTGGAGGAAGTAGGATTACTTCCCATTACCTTTGATCTCAAGGGTTCTGGTATTGATCTCACAGATTCTAACTCTGTTGCTACTCTAGCAGAGTATTCAAAACCATTGATTGACTATCTACAAAACCTTCCAGAGGATGAAAAGGTTATTTTGGTTGGTCACAGTAGTGGTGGTGCCTGTGTTTCTTATGCACTGGAGCATTTTCCGCAAAAAATTTCAAAAGCAATATTCATCTGTGCCACTATGGTGTCTAATGATCAGAGACCCTTTGATGTATTTGCTGAAGAGGTAAAATATTTTATTATATCCCAGATAGGGCCTAACATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

304

Amino Acids

34.26

Weight (kDa)

8.68

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	175 - 278	5.4e-12	alpha/beta hydrolase fold
Hydrolase_4	PF12146	175 - 283	7.9e-07	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	176 - 281	9.4e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33990 AT4G09900
fragaria_vesca	FvH4_5g32490
malus_domestica	MD08G1216700.v1.1 MD15G1403900.v1.1
prunus_persica	Prupe.1G550200_v2.0.a1
pyrus_communis	pycom08g18760 pycom15g36120
rosa_chinensis	RchiOBHm_Chr7g0229071
rosa_laevigata	RLG00000001533
rosa_multiflora	Rmu_sc0000271.1_g000022
rosa_roxburghii	Rroxscaffold_3G00230770
rosa_rugosa	Rorug07G0255400
rosa_samantha	Rh7AG406500 Rh7BG385900 Rh7CG424300 Rh7DG400800
rosa_wichuraiana	Rw7G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	2 cut(s)	487, 755
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	2 cut(s)	316, 788
AclWI	GGATC	4 cut(s)	288, 301, 408, 421
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	496, 795
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	2 cut(s)	489, 566
AfiI	CCNNNNNNNGG	5 cut(s)	245, 423, 450, 715, 897
AgsI	TTSAA	2 cut(s)	681, 801
AleI	CACNNNNGTG	2 cut(s)	747, 827
AluBI	AGCT	5 cut(s)	18, 167, 230, 365, 447
AluI	AGCT	5 cut(s)	18, 167, 230, 365, 447
Alw26I	GTCTC	2 cut(s)	402, 838
AlwI	GGATC	4 cut(s)	288, 301, 408, 421
AlwNI	CAGNNNCTG	2 cut(s)	84, 213
AoxI	GGCC	2 cut(s)	189, 899
ApoI	RAATTY	2 cut(s)	496, 795
AseI	ATTAAT	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	899
AsuC2I	CCSGG	2 cut(s)	45, 159
AsuHPI	GGTGA	3 cut(s)	44, 98, 322
BamHI	GGATCC	2 cut(s)	293, 413
BanI	GGYRCC	2 cut(s)	487, 755
BarI	GAAGNNNNNNTAC	4 cut(s)	582, 585, 614, 617
BccI	CCATC	2 cut(s)	153, 404
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	2 cut(s)	45, 159
BcoDI	GTCTC	2 cut(s)	402, 838
BfaI	CTAG	3 cut(s)	423, 450, 668
BfuAI	ACCTGC	1 cut(s)	475
Bme1390I	CCNGG	2 cut(s)	45, 159
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	5 cut(s)	279, 295, 415, 489, 757
BmrFI	CCNGG	2 cut(s)	45, 159
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpmI	CTGGAG	2 cut(s)	605, 797
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	45, 159
BsaI	GGTCTC	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	5 cut(s)	245, 423, 450, 715, 897
Bse1I	ACTGG	2 cut(s)	239, 780
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	5 cut(s)	245, 423, 450, 715, 897
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	239, 780
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	191, 901
BshNI	GGYRCC	2 cut(s)	487, 755
BsiSI	CCGG	3 cut(s)	44, 159, 188
BslI	CCNNNNNNNGG	5 cut(s)	245, 423, 450, 715, 897
BsmAI	GTCTC	2 cut(s)	402, 838
BsnI	GGCC	2 cut(s)	191, 901
Bso31I	GGTCTC	1 cut(s)	838
Bsp143I	GATC	5 cut(s)	293, 413, 616, 637, 838
BspACI	CCGC	2 cut(s)	316, 788
BspANI	GGCC	2 cut(s)	191, 901
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	5 cut(s)	279, 295, 415, 489, 757
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	4 cut(s)	288, 301, 408, 421
BspT107I	GGYRCC	2 cut(s)	487, 755
BspTNI	GGTCTC	1 cut(s)	838
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	239, 780
BssMI	GATC	5 cut(s)	293, 413, 616, 637, 838
Bst4CI	ACNGT	3 cut(s)	209, 396, 746
Bst6I	CTCTTC	2 cut(s)	31, 861
BstC8I	GCNNGC	2 cut(s)	336, 363
BstDEI	CTNAG	2 cut(s)	270, 399
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	724
BstKTI	GATC	5 cut(s)	296, 416, 619, 640, 841
BstMAI	GTCTC	2 cut(s)	402, 838
BstMBI	GATC	5 cut(s)	293, 413, 616, 637, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	444, 668, 787
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	43, 157
BstX2I	RGATCY	2 cut(s)	293, 413
BstYI	RGATCY	2 cut(s)	293, 413
BsuRI	GGCC	2 cut(s)	191, 901
BtsCI	GGATG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	773
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	336, 363
CaiI	CAGNNNCTG	2 cut(s)	84, 213
Cfr13I	GGNCC	1 cut(s)	899
Csp6I	GTAC	2 cut(s)	488, 565
CviAII	CATG	4 cut(s)	265, 418, 536, 555
CviJI	RGCY	9 cut(s)	18, 167, 191, 230, 365, 377, 438, 447, 901
CviKI_1	RGCY	9 cut(s)	18, 167, 191, 230, 365, 377, 438, 447, 901
CviQI	GTAC	2 cut(s)	488, 565
DdeI	CTNAG	2 cut(s)	270, 399
DpnI	GATC	5 cut(s)	295, 415, 618, 639, 840
DpnII	GATC	5 cut(s)	293, 413, 616, 637, 838
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	31, 861
EarI	CTCTTC	2 cut(s)	31, 861
Eco31I	GGTCTC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	885
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	899
FaeI	CATG	4 cut(s)	268, 421, 539, 558
FaiI	YATR	8 cut(s)	266, 374, 419, 537, 556, 771, 827, 887
FatI	CATG	4 cut(s)	264, 417, 535, 554
FbaI	TGATCA	1 cut(s)	838
FokI	GGATG	1 cut(s)	731
FspBI	CTAG	3 cut(s)	423, 450, 668
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	2 cut(s)	605, 797
HaeIII	GGCC	2 cut(s)	191, 901
HapII	CCGG	3 cut(s)	44, 159, 188
Hin1II	CATG	4 cut(s)	268, 421, 539, 558
HinfI	GANTC	2 cut(s)	470, 647
HpaII	CCGG	3 cut(s)	44, 159, 188
HphI	GGTGA	3 cut(s)	44, 98, 322
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	402, 843
Hpy188III	TCNNGA	4 cut(s)	98, 170, 297, 713
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	4 cut(s)	15, 268, 536, 719
HpyCH4III	ACNGT	3 cut(s)	209, 396, 746
HpyCH4V	TGCA	4 cut(s)	264, 338, 355, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	444, 668, 787
HpyF3I	CTNAG	2 cut(s)	270, 399
Hsp92II	CATG	4 cut(s)	268, 421, 539, 558
KpnI	GGTACC	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	5 cut(s)	293, 413, 616, 637, 838
LmnI	GCTCC	2 cut(s)	551, 778
MaeI	CTAG	3 cut(s)	423, 450, 668
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	5 cut(s)	295, 415, 618, 639, 840
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	5 cut(s)	293, 413, 616, 637, 838
MboII	GAAGA	5 cut(s)	48, 140, 170, 353, 878
MflI	RGATCY	2 cut(s)	293, 413
MluCI	AATT	7 cut(s)	23, 195, 429, 496, 573, 795, 910
MnlI	CCTC	9 cut(s)	65, 105, 114, 300, 318, 396, 580, 709, 862
MseI	TTAA	4 cut(s)	11, 432, 530, 913
MslI	CAYNNNNRTG	2 cut(s)	747, 827
MspI	CCGG	3 cut(s)	44, 159, 188
MspR9I	CCNGG	2 cut(s)	45, 159
MwoI	GCNNNNNNNGC	3 cut(s)	444, 668, 787
NciI	CCSGG	2 cut(s)	45, 159
NdeII	GATC	5 cut(s)	293, 413, 616, 637, 838
NlaIII	CATG	4 cut(s)	268, 421, 539, 558
NlaIV	GGNNCC	5 cut(s)	279, 295, 415, 489, 757
NmuCI	GTSAC	1 cut(s)	740
NspI	RCATGY	1 cut(s)	268
OliI	CACNNNNGTG	2 cut(s)	747, 827
PfeI	GAWTC	2 cut(s)	470, 647
PfoI	TCCNGGA	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	5 cut(s)	279, 295, 415, 489, 757
PspPI	GGNCC	1 cut(s)	899
PstNI	CAGNNNCTG	2 cut(s)	84, 213
PsuI	RGATCY	2 cut(s)	293, 413
RsaI	GTAC	2 cut(s)	489, 566
RsaNI	GTAC	2 cut(s)	488, 565
RseI	CAYNNNNRTG	2 cut(s)	747, 827
SaqAI	TTAA	4 cut(s)	11, 432, 530, 913
Sau3AI	GATC	5 cut(s)	293, 413, 616, 637, 838
Sau96I	GGNCC	1 cut(s)	899
ScrFI	CCNGG	2 cut(s)	45, 159
SmiMI	CAYNNNNRTG	2 cut(s)	747, 827
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	7 cut(s)	23, 195, 429, 496, 573, 795, 910
SsiI	CCGC	2 cut(s)	316, 788
SspI	AATATT	3 cut(s)	134, 810, 878
SspMI	CTAG	3 cut(s)	423, 450, 668
StyD4I	CCNGG	2 cut(s)	43, 157
TaaI	ACNGT	3 cut(s)	209, 396, 746
TaqI	TCGA	1 cut(s)	99
TasI	AATT	7 cut(s)	23, 195, 429, 496, 573, 795, 910
TfiI	GAWTC	2 cut(s)	470, 647
Tru1I	TTAA	4 cut(s)	11, 432, 530, 913
Tru9I	TTAA	4 cut(s)	11, 432, 530, 913
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	740
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	4 cut(s)	140, 371, 735, 802
TspRI	CASTG	1 cut(s)	780
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	2 cut(s)	496, 795
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	3 cut(s)	423, 450, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.