Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013298

Physical Location & Seq

Genomic Coordinates Reverse (-)

17156380 .. 17160839

Gene Structure 4460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001533

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGTAATCGGTTTATTTGCATGTCTAAGAAGGAACCCAAAGAGAATGGATCCAGAAGTAAGAGGGTGAACCGCTCACAGAGGAAAATGCTTGCAGAAGATGAGTTCTTGCACAGGCAAGCTCTGTCTATGGCTATTCATCAGCACCAACTGTCTCAGAGGTTTGATGGATCCATGTCTAGGAGAATTAACGGCTCTACCAGCTCTAGGAGAACCACCCTGCCCGAATCAGTAGCAAAGCAGGTACCTGAAAATTTGGATAACATTACGACTAAAAAGTTTATTTTAATACATGGAGAAGGGTTTGGAGCATGGTGTTGGTACAAAACAATCACTCTGCTGGAGGAAGTAGGATTGCTTCCCACTACCTTTGATCTCAAGGGTTCTGGTATTGATCTCACAGATTCTAACTCTGTTACTACTTTAGCAGAGTATTCAAAACCATTGATTGACTATCTACAAAACCTTCCAGAGGATGAAAAGGTTATTTTGGTTGGTCACAGTAGTGGTGGTGCCTGTGTTTCCTATGCACTGGAGCACTTTCCGCAAAAAATTTCAAAAGCAATATTCATCTGTGCCACTATGGTGTCTAATGATCAGAGACCCTTTGATGTATTTGCTGAAGAGCTTGGTTCTGCGGAAAATTTTATGCAACAATCAAAGTTTATGATTCATGGAAATGGAAAAAACCAGCCTCCTACAGGATTTATGTTTGAGAAAGAACAGATGAAAGGGTTATATTTCAATCAATCTCCTGCAAAGGATGTTGCTTTGGCCATGCTGTCCATGAGACCTATCCCAATAGGTCCAATCATGGAGAAACTGTCACTGTCGCCTGAGAAGTATGGAACTAGCCGGCGCTTCTTCATTCAAACATTAGATGATCGGGCACTTTCACCAGATGTCCAAGAAAAGCTGGTCAGGGAAAATCCACCAGAGGGAGTGTTCAAGATAAAAGGCAGTGACCACTGCCCATTCTTCTCAAAGCCAACGTCATTGCACAAAATTTTGGTGGAAATTGCTCAAATCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

345

Amino Acids

38.74

Weight (kDa)

8.67

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	93 - 206	8.2e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	94 - 329	9.1e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	95 - 330	3.3e-16	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33990 AT4G09900
fragaria_vesca	FvH4_5g32490
malus_domestica	MD08G1216700.v1.1 MD15G1403900.v1.1
prunus_persica	Prupe.1G550200_v2.0.a1
pyrus_communis	pycom08g18760 pycom15g36120
rosa_chinensis	RchiOBHm_Chr7g0229071
rosa_laevigata	RLG00000001533
rosa_multiflora	Rmu_sc0000271.1_g000022
rosa_roxburghii	Rroxscaffold_3G00230770
rosa_rugosa	Rorug07G0255400
rosa_samantha	Rh7AG406500 Rh7BG385900 Rh7CG424300 Rh7DG400800
rosa_wichuraiana	Rw7G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	2 cut(s)	244, 512
AccBSI	CCGCTC	1 cut(s)	75
AciI	CCGC	3 cut(s)	73, 545, 638
AclWI	GGATC	4 cut(s)	45, 58, 165, 178
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	4 cut(s)	253, 552, 643, 1005
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	2 cut(s)	246, 323
AfiI	CCNNNNNNNGG	5 cut(s)	180, 207, 472, 701, 938
AgsI	TTSAA	5 cut(s)	438, 558, 745, 872, 949
AleI	CACNNNNGTG	2 cut(s)	504, 584
AluBI	AGCT	4 cut(s)	122, 204, 628, 916
AluI	AGCT	4 cut(s)	122, 204, 628, 916
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	3 cut(s)	159, 595, 784
AlwI	GGATC	4 cut(s)	45, 58, 165, 178
AoxI	GGCC	1 cut(s)	774
ApoI	RAATTY	4 cut(s)	253, 552, 643, 1005
ArsI	GACNNNNNNTTYG	2 cut(s)	977, 1009
Asp718I	GGTACC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	861
AspS9I	GGNCC	1 cut(s)	806
AsuHPI	GGTGA	2 cut(s)	79, 888
AvaII	GGWCC	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	892
BalI	TGGCCA	1 cut(s)	776
BamHI	GGATCC	2 cut(s)	50, 170
BanI	GGYRCC	2 cut(s)	244, 512
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
Bbv12I	GWGCWC	1 cut(s)	540
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	208
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	159, 595, 784
BfaI	CTAG	3 cut(s)	180, 207, 852
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	862
BfuAI	ACCTGC	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	5 cut(s)	36, 52, 172, 246, 514
BpmI	CTGGAG	2 cut(s)	362, 554
BpuEI	CTTGAG	1 cut(s)	362
BsaI	GGTCTC	2 cut(s)	595, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 207, 472, 701, 938
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	995
BseGI	GGATG	2 cut(s)	481, 769
BseLI	CCNNNNNNNGG	5 cut(s)	180, 207, 472, 701, 938
BseMI	GCAATG	1 cut(s)	995
BseMII	CTCAG	2 cut(s)	170, 828
BseNI	ACTGG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	892
BshFI	GGCC	1 cut(s)	776
BshNI	GGYRCC	2 cut(s)	244, 512
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	856
BslI	CCNNNNNNNGG	5 cut(s)	180, 207, 472, 701, 938
BsmAI	GTCTC	3 cut(s)	159, 595, 784
BsnI	GGCC	1 cut(s)	776
Bso31I	GGTCTC	2 cut(s)	595, 784
Bsp1286I	GDGCHC	2 cut(s)	540, 892
Bsp143I	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
BspACI	CCGC	3 cut(s)	73, 545, 638
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	2 cut(s)	169, 829
BspLI	GGNNCC	5 cut(s)	36, 52, 172, 246, 514
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	4 cut(s)	45, 58, 165, 178
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	2 cut(s)	244, 512
BspTNI	GGTCTC	2 cut(s)	595, 784
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	855
BssMI	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
Bst4CI	ACNGT	4 cut(s)	153, 503, 825, 831
Bst6I	CTCTTC	1 cut(s)	618
BstC8I	GCNNGC	3 cut(s)	93, 120, 857
BstDEI	CTNAG	3 cut(s)	27, 156, 837
BstENI	CCTNNNNNAGG	2 cut(s)	470, 699
BstF5I	GGATG	2 cut(s)	481, 769
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	6 cut(s)	53, 173, 376, 397, 598, 886
BstMAI	GTCTC	3 cut(s)	159, 595, 784
BstMBI	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 544
BstNSI	RCATGY	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	892
BstX2I	RGATCY	2 cut(s)	50, 170
BstYI	RGATCY	2 cut(s)	50, 170
BsuRI	GGCC	1 cut(s)	776
BtsCI	GGATG	2 cut(s)	481, 769
BtsI	GCAGTG	2 cut(s)	967, 967
BtsIMutI	CAGTG	4 cut(s)	530, 827, 967, 967
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	93, 120, 857
CfoI	GCGC	1 cut(s)	861
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	1 cut(s)	806
Csp6I	GTAC	2 cut(s)	245, 322
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	8 cut(s)	22, 175, 293, 312, 674, 778, 787, 814
CviQI	GTAC	2 cut(s)	245, 322
DdeI	CTNAG	3 cut(s)	27, 156, 837
DpnI	GATC	6 cut(s)	52, 172, 375, 396, 597, 885
DpnII	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco31I	GGTCTC	2 cut(s)	595, 784
Eco47I	GGWCC	1 cut(s)	806
Eco57I	CTGAAG	1 cut(s)	642
EcoNI	CCTNNNNNAGG	2 cut(s)	470, 699
FaeI	CATG	8 cut(s)	25, 178, 296, 315, 677, 781, 790, 817
FatI	CATG	8 cut(s)	21, 174, 292, 311, 673, 777, 786, 813
FbaI	TGATCA	1 cut(s)	595
FokI	GGATG	2 cut(s)	488, 776
FspBI	CTAG	3 cut(s)	180, 207, 852
GlaI	GCGC	1 cut(s)	860
GsuI	CTGGAG	2 cut(s)	362, 554
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	1 cut(s)	776
HapII	CCGG	1 cut(s)	856
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	8 cut(s)	25, 178, 296, 315, 677, 781, 790, 817
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HinfI	GANTC	3 cut(s)	227, 404, 670
HpaII	CCGG	1 cut(s)	856
HphI	GGTGA	2 cut(s)	79, 888
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	159, 600
Hpy188III	TCNNGA	3 cut(s)	54, 470, 949
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	3 cut(s)	25, 293, 476
HpyCH4III	ACNGT	4 cut(s)	153, 503, 825, 831
HpyCH4IV	ACGT	1 cut(s)	992
HpyCH4V	TGCA	7 cut(s)	21, 95, 112, 530, 652, 758, 1000
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 544
HpyF3I	CTNAG	3 cut(s)	27, 156, 837
HpySE526I	ACGT	1 cut(s)	992
Hsp92II	CATG	8 cut(s)	25, 178, 296, 315, 677, 781, 790, 817
HspAI	GCGC	1 cut(s)	859
KpnI	GGTACC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	855
KroNI	GCCGGC	1 cut(s)	857
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	2 cut(s)	308, 535
MaeI	CTAG	3 cut(s)	180, 207, 852
MaeII	ACGT	1 cut(s)	992
MaeIII	GTNAC	4 cut(s)	415, 497, 825, 962
MalI	GATC	6 cut(s)	52, 172, 375, 396, 597, 885
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
MboII	GAAGA	4 cut(s)	110, 635, 856, 970
MflI	RGATCY	2 cut(s)	50, 170
MhlI	GDGCHC	2 cut(s)	540, 892
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	6 cut(s)	186, 253, 552, 643, 1005, 1017
MluNI	TGGCCA	1 cut(s)	776
MnlI	CCTC	7 cut(s)	57, 75, 153, 337, 466, 705, 931
Mox20I	TGGCCA	1 cut(s)	776
MroNI	GCCGGC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	2 cut(s)	189, 287
MslI	CAYNNNNRTG	3 cut(s)	504, 584, 678
Msp20I	TGGCCA	1 cut(s)	776
MspI	CCGG	1 cut(s)	856
MwoI	GCNNNNNNNGC	2 cut(s)	201, 544
NaeI	GCCGGC	1 cut(s)	857
NdeII	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
NgoMIV	GCCGGC	1 cut(s)	855
NlaIII	CATG	8 cut(s)	25, 178, 296, 315, 677, 781, 790, 817
NlaIV	GGNNCC	5 cut(s)	36, 52, 172, 246, 514
NmuCI	GTSAC	3 cut(s)	497, 825, 962
NspI	RCATGY	1 cut(s)	25
OliI	CACNNNNGTG	2 cut(s)	504, 584
PciSI	GCTCTTC	1 cut(s)	618
PdiI	GCCGGC	1 cut(s)	857
PfeI	GAWTC	3 cut(s)	227, 404, 670
PspN4I	GGNNCC	5 cut(s)	36, 52, 172, 246, 514
PspPI	GGNCC	1 cut(s)	806
PsuI	RGATCY	2 cut(s)	50, 170
RsaI	GTAC	2 cut(s)	246, 323
RsaNI	GTAC	2 cut(s)	245, 322
RseI	CAYNNNNRTG	3 cut(s)	504, 584, 678
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	189, 287
Sau3AI	GATC	6 cut(s)	50, 170, 373, 394, 595, 883
Sau96I	GGNCC	1 cut(s)	806
SduI	GDGCHC	2 cut(s)	540, 892
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	1 cut(s)	806
SmiMI	CAYNNNNRTG	3 cut(s)	504, 584, 678
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	186, 253, 552, 643, 1005, 1017
SsiI	CCGC	3 cut(s)	73, 545, 638
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	3 cut(s)	180, 207, 852
TaaI	ACNGT	4 cut(s)	153, 503, 825, 831
TaiI	ACGT	1 cut(s)	995
TasI	AATT	6 cut(s)	186, 253, 552, 643, 1005, 1017
TfiI	GAWTC	3 cut(s)	227, 404, 670
Tru1I	TTAA	2 cut(s)	189, 287
Tru9I	TTAA	2 cut(s)	189, 287
TscAI	CASTG	4 cut(s)	537, 834, 967, 974
TseFI	GTSAC	3 cut(s)	497, 825, 962
Tsp45I	GTSAC	3 cut(s)	497, 825, 962
TspDTI	ATGAA	6 cut(s)	128, 492, 559, 662, 743, 856
TspRI	CASTG	4 cut(s)	537, 834, 967, 974
VpaK11BI	GGWCC	1 cut(s)	806
XagI	CCTNNNNNAGG	2 cut(s)	470, 699
XapI	RAATTY	4 cut(s)	253, 552, 643, 1005
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	3 cut(s)	180, 207, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.