Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013298

Physical Location & Seq

Genomic Coordinates Reverse (-)

15661067 .. 15663862

Gene Structure 2796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTTAAACTTAAAATCTGTGTAATTCTTGTGCAGGTTATTTTGGTTGGTCACAGTAGTGGTGGTGCCTGTGTTTCTTATGCACTGGAGCATTTTCCGCAAAAAATTTCAAAAGCAATATTCATCTGTGCCACTATGGTGTCTAATGATCAGAGACCCTTTGATGTATTTGCTGAAGAGGGTTCTGCGGAAGATTTTATGCAACAATCAAAGTTTATGATTCATGGAAATGGAAAAGAGCAGCCTCCTACAGGATTTATGTTTGAGAAAGAACAGATGAAAGGGTTATATTTCAATCAATCTCCTGCAAAGGATGTCGCTCTGGCCATGGTGTCCATGAGACCTATCCCACTAGGTCCAATCATGGAAAAACTATCACTGTCGCCTGAGAAGTATGGAACTAGCCGACGCTTCTTCATTCAAACATTAGATGATCGGGCACTTTCACCAGATGTCCAAGAAAAGCTGGTCAGGGAAAATCCACCAGAGGGAGTGTTCAAGATAAAAGGCAGTGATCACTGCCCATTCTTCTCAAAGCCAACGTCATTGCACAAAATTTTGGTGGAAATTGCTCAAATCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

194

Amino Acids

21.68

Weight (kDa)

7.69

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	11 - 180	3.6e-08	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	12 - 180	1.5e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33990 AT4G09900
fragaria_vesca	FvH4_5g32490
malus_domestica	MD08G1216700.v1.1 MD15G1403900.v1.1
prunus_persica	Prupe.1G550200_v2.0.a1
pyrus_communis	pycom08g18760 pycom15g36120
rosa_chinensis	RchiOBHm_Chr7g0229071
rosa_laevigata	RLG00000001533
rosa_multiflora	Rmu_sc0000271.1_g000022
rosa_roxburghii	Rroxscaffold_3G00230770
rosa_rugosa	Rorug07G0255400
rosa_samantha	Rh7AG406500 Rh7BG385900 Rh7CG424300 Rh7DG400800
rosa_wichuraiana	Rw7G033740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	98, 188
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	105, 555
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	251, 488
AgsI	TTSAA	4 cut(s)	111, 295, 422, 499
AleI	CACNNNNGTG	2 cut(s)	57, 137
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	148, 334
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	2 cut(s)	105, 555
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	442
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	253
BclI	TGATCA	2 cut(s)	148, 514
BcoDI	GTCTC	2 cut(s)	148, 334
BfaI	CTAG	2 cut(s)	353, 402
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	107
BsaI	GGTCTC	2 cut(s)	148, 334
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 488
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	251, 488
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	251, 488
BsmAI	GTCTC	2 cut(s)	148, 334
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	2 cut(s)	148, 334
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	148, 433, 514
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	2 cut(s)	98, 188
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	148, 334
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	3 cut(s)	148, 433, 514
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	56, 381
Bst6I	CTCTTC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	3 cut(s)	151, 436, 517
BstMAI	GTCTC	2 cut(s)	148, 334
BstMBI	GATC	3 cut(s)	148, 433, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	2 cut(s)	517, 517
BtsIMutI	CAGTG	4 cut(s)	83, 377, 517, 517
BveI	ACCTGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	1 cut(s)	417
CviAII	CATG	4 cut(s)	224, 328, 337, 364
CviJI	RGCY	5 cut(s)	244, 326, 405, 466, 538
CviKI_1	RGCY	5 cut(s)	244, 326, 405, 466, 538
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	150, 435, 516
DpnII	GATC	3 cut(s)	148, 433, 514
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	327
Eco31I	GGTCTC	2 cut(s)	148, 334
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	4 cut(s)	227, 331, 340, 367
FatI	CATG	4 cut(s)	223, 327, 336, 363
FbaI	TGATCA	2 cut(s)	148, 514
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	2 cut(s)	353, 402
GluI	GCNGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	326
HgaI	GACGC	1 cut(s)	417
Hin1II	CATG	4 cut(s)	227, 331, 340, 367
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	438
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	56, 381
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	5 cut(s)	34, 83, 202, 308, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	4 cut(s)	227, 331, 340, 367
Ksp22I	TGATCA	2 cut(s)	148, 514
Kzo9I	GATC	3 cut(s)	148, 433, 514
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	353, 402
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	150, 435, 516
MboI	GATC	3 cut(s)	148, 433, 514
MboII	GAAGA	4 cut(s)	188, 203, 406, 520
MhlI	GDGCHC	1 cut(s)	442
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	4 cut(s)	24, 105, 555, 567
MluNI	TGGCCA	1 cut(s)	326
MnlI	CCTC	3 cut(s)	172, 255, 481
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	2 cut(s)	6, 12
MslI	CAYNNNNRTG	3 cut(s)	57, 137, 228
Msp20I	TGGCCA	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	3 cut(s)	148, 433, 514
NlaIII	CATG	4 cut(s)	227, 331, 340, 367
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	50
OliI	CACNNNNGTG	2 cut(s)	57, 137
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	356
RseI	CAYNNNNRTG	3 cut(s)	57, 137, 228
SaqAI	TTAA	2 cut(s)	6, 12
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	3 cut(s)	148, 433, 514
Sau96I	GGNCC	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	5 cut(s)	39, 346, 358, 468, 545
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	3 cut(s)	57, 137, 228
Sse9I	AATT	4 cut(s)	24, 105, 555, 567
SsiI	CCGC	2 cut(s)	98, 188
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	2 cut(s)	353, 402
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	56, 381
TaiI	ACGT	1 cut(s)	545
TasI	AATT	4 cut(s)	24, 105, 555, 567
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	6, 12
Tru9I	TTAA	2 cut(s)	6, 12
TscAI	CASTG	4 cut(s)	90, 384, 517, 524
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	112, 212, 293, 406
TspRI	CASTG	4 cut(s)	90, 384, 517, 524
VpaK11BI	GGWCC	1 cut(s)	356
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	2 cut(s)	105, 555
XspI	CTAG	2 cut(s)	353, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.