pycom08g18760

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013298
Physical Location & Seq
Reverse (-)
18851384 .. 18853062
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18760.1

Sequence Viewer

Length: 423 bp
ATGGGTAATCGATTTATTTGCATGTCAAAGAAGGACACCAAAGAAAATGGATCGAGAAGCAAGAGAATGAATCGCTCGCAGAGGAAACTGGTCGCGGAGGAAGACTTGCTGCACAGGCAAGCTCTGTCTATGGTTCTTCAACAACAGCAATCGTCGCAGAGGTTTGACGGATCCATGTCCAGGAGGATTGGGGGGTCCACAAGCTCCAGGAGACTCGCCTCTGATCCATTGACTAATGTGAAGCAGGGACCAGAATTTTTGGAGAAGCTTACGTCAAAAAAGTTCATTCTTGTACATGGAGGAGGATTTGGGGCATGGTGTTGGTACAAAACAATTGCTCTACTAGAGGAAGCGGGATTGCTTGCAATCACTTTTGATCGATCAAGGATTCTGATATCGATCTCACAGATACAAACTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

141

Amino Acids

15.84

Weight (kDa)

10.38

Isoelectric Point (pI)

73.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33990 AT4G09900
fragaria_vesca FvH4_5g32490
malus_domestica MD08G1216700.v1.1 MD15G1403900.v1.1
prunus_persica Prupe.1G550200_v2.0.a1
pyrus_communis pycom08g18760 pycom15g36120
rosa_chinensis RchiOBHm_Chr7g0229071
rosa_laevigata RLG00000001533
rosa_multiflora Rmu_sc0000271.1_g000022
rosa_roxburghii Rroxscaffold_3G00230770
rosa_rugosa Rorug07G0255400
rosa_samantha Rh7AG406500 Rh7BG385900 Rh7CG424300 Rh7DG400800
rosa_wichuraiana Rw7G033740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 95, 353
AclWI GGATC 4 cut(s) 58, 165, 178, 218
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 2 cut(s) 294, 326
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 2 cut(s) 179, 206
AluBI AGCT 3 cut(s) 122, 204, 268
AluI AGCT 3 cut(s) 122, 204, 268
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 4 cut(s) 58, 165, 178, 218
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 195, 248
AvaII GGWCC 2 cut(s) 195, 248
BamHI GGATCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 96
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 181, 208
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 419
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 2 cut(s) 181, 208
Bme18I GGWCC 2 cut(s) 195, 248
BmgT120I GGNCC 2 cut(s) 195, 248
BmiI GGNNCC 3 cut(s) 172, 196, 249
BmrFI CCNGG 2 cut(s) 181, 208
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 190
Bsa29I ATCGAT 3 cut(s) 10, 379, 398
BsaBI GATNNNNATC 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 398
BseBI CCWGG 2 cut(s) 181, 208
BseCI ATCGAT 3 cut(s) 10, 379, 398
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 95
BshVI ATCGAT 3 cut(s) 10, 379, 398
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 6 cut(s) 50, 170, 223, 376, 380, 399
BspACI CCGC 2 cut(s) 95, 353
BspDI ATCGAT 3 cut(s) 10, 379, 398
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 172, 196, 249
BspPI GGATC 4 cut(s) 58, 165, 178, 218
BsrGI TGTACA 1 cut(s) 292
BsrI ACTGG 1 cut(s) 93
BssMI GATC 6 cut(s) 50, 170, 223, 376, 380, 399
Bst2UI CCWGG 2 cut(s) 181, 208
BstAUI TGTACA 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 77, 120, 363
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 6 cut(s) 53, 173, 226, 379, 383, 402
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 6 cut(s) 50, 170, 223, 376, 380, 399
BstMWI GCNNNNNNNGC 2 cut(s) 115, 154
BstNI CCWGG 2 cut(s) 181, 208
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 179, 206
BstSFI CTRYAG 1 cut(s) 419
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu15I ATCGAT 3 cut(s) 10, 379, 398
BsuTUI ATCGAT 3 cut(s) 10, 379, 398
Cac8I GCNNGC 3 cut(s) 77, 120, 363
Cfr13I GGNCC 2 cut(s) 195, 248
ClaI ATCGAT 3 cut(s) 10, 379, 398
Csp6I GTAC 2 cut(s) 293, 325
CviAII CATG 4 cut(s) 22, 175, 296, 315
CviJI RGCY 3 cut(s) 122, 204, 268
CviKI_1 RGCY 3 cut(s) 122, 204, 268
CviQI GTAC 2 cut(s) 293, 325
DpnI GATC 6 cut(s) 52, 172, 225, 378, 382, 401
DpnII GATC 6 cut(s) 50, 170, 223, 376, 380, 399
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 195, 248
EcoRII CCWGG 2 cut(s) 179, 206
EcoRV GATATC 1 cut(s) 396
FaeI CATG 4 cut(s) 25, 178, 299, 318
FaiI YATR 5 cut(s) 23, 131, 176, 297, 316
FaqI GGGAC 1 cut(s) 261
FatI CATG 4 cut(s) 21, 174, 295, 314
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 344
GluI GCNGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 190
Hin1II CATG 4 cut(s) 25, 178, 299, 318
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 3 cut(s) 70, 213, 388
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 223, 393
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 21, 112, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 154
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 4 cut(s) 25, 178, 299, 318
Kzo9I GATC 6 cut(s) 50, 170, 223, 376, 380, 399
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 8 cut(s) 74, 100, 166, 193, 193, 220, 230, 264
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 272
MalI GATC 6 cut(s) 52, 172, 225, 378, 382, 401
MboI GATC 6 cut(s) 50, 170, 223, 376, 380, 399
MboII GAAGA 2 cut(s) 113, 128
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 170
MluCI AATT 2 cut(s) 254, 333
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 8 cut(s) 75, 91, 153, 177, 229, 293, 296, 340
MspR9I CCNGG 2 cut(s) 181, 208
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 2 cut(s) 181, 208
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 115, 154
NdeII GATC 6 cut(s) 50, 170, 223, 376, 380, 399
NlaIII CATG 4 cut(s) 25, 178, 299, 318
NlaIV GGNNCC 3 cut(s) 172, 196, 249
NspI RCATGY 1 cut(s) 25
PfeI GAWTC 2 cut(s) 70, 388
PfoI TCCNGGA 2 cut(s) 179, 206
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 179, 206
PspGI CCWGG 2 cut(s) 179, 206
PspN4I GGNNCC 3 cut(s) 172, 196, 249
PspPI GGNCC 2 cut(s) 195, 248
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 294, 326
RsaNI GTAC 2 cut(s) 293, 325
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 6 cut(s) 50, 170, 223, 376, 380, 399
Sau96I GGNCC 2 cut(s) 195, 248
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 181, 208
SetI ASST 5 cut(s) 124, 164, 206, 270, 275
SfcI CTRYAG 1 cut(s) 419
SinI GGWCC 2 cut(s) 195, 248
Sse9I AATT 2 cut(s) 254, 333
SsiI CCGC 2 cut(s) 95, 353
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 179, 206
TaiI ACGT 1 cut(s) 275
TaqI TCGA 4 cut(s) 10, 53, 379, 398
TasI AATT 2 cut(s) 254, 333
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 2 cut(s) 70, 388
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 83, 274
TspGWI ACGGA 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 195, 248
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 25
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.