Prupe.1G572500_v2.0.a1

H ACA ribonucleoprotein complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
46672815 .. 46674688
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G572500.1

Sequence Viewer

Length: 1551 bp
ATGGCTTCGTCTGATGATGATCGAGCCCCAGTGAAGGCTGTGGCGAAAGGGGCGGATATAGAGAAGAAGAAGAAGAAGAAAAAGCATAGAGATAAAGACAATGATTTGGACAAAAACTTCATGATTAAGCCCCAGAGCTCGACTCCCTCCATGGACACCTCTCAGTGGCCTATCCTTCTCAAAAACTATGACCGCCTCAATGTTCGAACTGGACACTACACCCCTCTTCCCTCCGGGTATTCGCCCCTTAAGCGCCCTCTTGCCGAGTACATCCGATATGGTGTTATCAATCTTGACAAGCCCGCCAACCCCTCTTCGCACGAGGTTGTCGCTTGGATTAAACGCATCCTTCGCGTAGAGAAAACTGGCCACAGTGGTACTCTGGATCCTAAGGTTACGGGTAATCTCATTGTCTGCATTGACCGAGCCACGCGACTTGTCAAGTCCCAGCAGGGTGCAGGGAAAGAGTATGTCTGTGTTGCACGCTTGCATTCAGCCGTGCCTGATGTTGCCAAGGTGGCTCGTGCCCTTGAAGCCCTCACTGGGGCTGTCTTTCAGAAGCCGCCTTTGATATCAGCAGTCAAGAGGCAGCTTAGGATTAGGACTATATATGAAAGCAAGCTTCTTGAGTTTGATGCAGATAAGCATTTGGTCATTTTCTGGATTTCTTGCGAGGCAGGAACCTATGTGCGTACACTCTGTGTCCATTTGGGTTTGCTTCTTGGTGTGGGAGGGCATATGCAGGAGCTAAGGAGGGTCAGGTCTGGGATTATGGGCGAGAAAGACAACATGGTTACCATGCACGATGTCATGGATGCTCAATGGGTGTACGATAATTACAGGGATGAGAGTTATTTGAGGAGGGTCATTATGCCTCTTGAGGTGCTCTTGACCAGTTATAAGAGATTGGTTGTCAAGGACTCAGCAGTGAATGCCATCTGCTATGGTGCCAAGTTAATGATTCCAGGGCTGCTCAGGTTTGAGAATGATATTGAGGTTGGAGAGGAAGTTGTGCTTATGAGTACCAAAGGAGAAGCAATTGCATTGGGAATTGCTGAGATGACCACTGCTGTGATGGCAACTTGTGATCATGGTGTGGTGGCAAAGATTAAGAGGGTGGTGATGGATCGGGATACTTACCCAAGGAAGTGGGGATTGGGACCAAGGGCGTCCAAGAAGAAGAAGTTAATTGCAGAAGGGAAATTGGATAGGCACGGGAAGCCTACTGAGAGTACCCCTCAAGAATGGATCAGGAATGTGGTTTTACCTACAGGTGGGGATTTTATTGTTGCAGGCACTGCTGCTGCGCTCTGCACTGAACCTGCCGTGGCAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAAAAGGACAACAACAAGGATGAAGAGGAAGCTAAGGAGGGGTGTAAACGAAAACTAGAGGAAAGGGCAGAGAGCCCTGTTCCTGTTCCTGCTAAGAAAAGCAAAAGTGAAGAAGTTGAGAAGTCAGAAAAGAAAAAGAAGAAGAAAAAGGACAAAGAGAATGGAACACAAAGATAA

Protein Analysis

517

Amino Acids

57.9

Weight (kDa)

9.45

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 1330
AccB1I GGYRCC 1 cut(s) 947
AccII CGCG 2 cut(s) 354, 433
AciI CCGC 4 cut(s) 53, 193, 303, 563
AclWI GGATC 4 cut(s) 380, 393, 1134, 1256
AcoI YGGCCR 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 1169
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 6 cut(s) 269, 379, 694, 830, 1024, 1234
AfiI CCNNNNNNNGG 5 cut(s) 34, 165, 543, 544, 1274
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 533
AjnI CCWGG 1 cut(s) 964
AjuI GAANNNNNNNTTGG 2 cut(s) 1139, 1171
AleI CACNNNNGTG 1 cut(s) 1070
AluBI AGCT 5 cut(s) 138, 592, 622, 748, 1406
AluI AGCT 5 cut(s) 138, 592, 622, 748, 1406
Alw21I GWGCWC 2 cut(s) 140, 888
AlwI GGATC 4 cut(s) 380, 393, 1134, 1256
AlwNI CAGNNNCTG 1 cut(s) 1298
AoxI GGCC 2 cut(s) 167, 367
ApeKI GCWGC 4 cut(s) 589, 970, 1301, 1304
AspLEI GCGC 2 cut(s) 255, 1309
AspS9I GGNCC 1 cut(s) 1160
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 1132
AsuII TTCGAA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 1160
AxyI CCTNAGG 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 529
BalI TGGCCA 1 cut(s) 369
BamHI GGATCC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 3 cut(s) 28, 140, 1451
BauI CACGAG 2 cut(s) 320, 522
Bbv12I GWGCWC 2 cut(s) 140, 888
BbvI GCAGC 4 cut(s) 601, 957, 1288, 1291
BccI CCATC 3 cut(s) 944, 1069, 1117
BceAI ACGGC 2 cut(s) 482, 1310
BciT130I CCWGG 1 cut(s) 966
BciVI GTATCC 1 cut(s) 1126
BclI TGATCA 1 cut(s) 1087
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 1 cut(s) 1430
BfmI CTRYAG 1 cut(s) 1269
BfoI RGCGCY 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 1330
BfuI GTATCC 1 cut(s) 1126
BglI GCCNNNNNGGC 1 cut(s) 518
BisI GCNGC 5 cut(s) 563, 590, 971, 1302, 1305
BlsI GCNGC 5 cut(s) 564, 591, 972, 1303, 1306
Bme1390I CCNGG 2 cut(s) 235, 966
Bme18I GGWCC 1 cut(s) 1160
BmgT120I GGNCC 1 cut(s) 1160
BmiI GGNNCC 4 cut(s) 387, 682, 949, 1161
BmrFI CCNGG 2 cut(s) 235, 966
BmrI ACTGGG 2 cut(s) 23, 552
BmsI GCATC 3 cut(s) 354, 625, 805
BmuI ACTGGG 2 cut(s) 23, 552
BplI GAGNNNNNCTC 4 cut(s) 127, 159, 1222, 1254
Bpu10I CCTNAGC 4 cut(s) 593, 749, 974, 1407
Bpu14I TTCGAA 1 cut(s) 205
BpuEI CTTGAG 3 cut(s) 647, 899, 1224
BpuMI CCSGG 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 1169
BsaJI CCNNGG 6 cut(s) 150, 513, 965, 1142, 1163, 1326
BsaXI ACNNNNNCTCC 2 cut(s) 993, 1023
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 165, 543, 544, 1274
Bse1I ACTGG 5 cut(s) 29, 214, 370, 547, 894
Bse21I CCTNAGG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 966
BseDI CCNNGG 6 cut(s) 150, 513, 965, 1142, 1163, 1326
BseGI GGATG 5 cut(s) 270, 345, 820, 850, 1399
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 5 cut(s) 34, 165, 543, 544, 1274
BseMII CTCAG 5 cut(s) 176, 936, 988, 1047, 1218
BseNI ACTGG 5 cut(s) 29, 214, 370, 547, 894
BseRI GAGGAG 1 cut(s) 874
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 4 cut(s) 601, 957, 1288, 1291
BseYI CCCAGC 1 cut(s) 447
BsgI GTGCAG 2 cut(s) 477, 1297
Bsh1236I CGCG 2 cut(s) 354, 433
BshFI GGCC 2 cut(s) 169, 369
BshNI GGYRCC 1 cut(s) 947
BsiHKAI GWGCWC 2 cut(s) 140, 888
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 430, 1173
BslI CCNNNNNNNGG 5 cut(s) 34, 165, 543, 544, 1274
BsmFI GGGAC 2 cut(s) 430, 1173
BsmI GAATGC 2 cut(s) 490, 937
BsnI GGCC 2 cut(s) 169, 369
Bsp119I TTCGAA 1 cut(s) 205
Bsp1286I GDGCHC 5 cut(s) 28, 140, 529, 888, 1451
Bsp143I GATC 5 cut(s) 19, 385, 1087, 1126, 1248
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 4 cut(s) 53, 193, 303, 563
BspANI GGCC 2 cut(s) 169, 369
BspCNI CTCAG 5 cut(s) 175, 935, 987, 1048, 1219
BspFNI CGCG 2 cut(s) 354, 433
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 4 cut(s) 387, 682, 949, 1161
BspMI ACCTGC 1 cut(s) 1330
BspPI GGATC 4 cut(s) 380, 393, 1134, 1256
BspT104I TTCGAA 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 947
BspTI CTTAAG 1 cut(s) 248
BsrI ACTGG 5 cut(s) 29, 214, 370, 547, 894
BssECI CCNNGG 6 cut(s) 150, 513, 965, 1142, 1163, 1326
BssMI GATC 5 cut(s) 19, 385, 1087, 1126, 1248
BssNI GRCGYC 1 cut(s) 1169
BssSI CACGAG 2 cut(s) 320, 522
BssT1I CCWWGG 4 cut(s) 150, 513, 1142, 1163
Bst2BI CACGAG 2 cut(s) 320, 522
Bst2UI CCWGG 1 cut(s) 966
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 3 cut(s) 231, 319, 1392
BstACI GRCGYC 1 cut(s) 1169
BstAFI CTTAAG 1 cut(s) 248
BstAPI GCANNNNNTGC 2 cut(s) 932, 1298
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 5 cut(s) 303, 484, 488, 620, 1294
BstDSI CCRYGG 2 cut(s) 150, 1326
BstEII GGTNACC 1 cut(s) 793
BstF5I GGATG 5 cut(s) 270, 345, 820, 850, 1399
BstFNI CGCG 2 cut(s) 354, 433
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 2 cut(s) 255, 1309
BstKTI GATC 5 cut(s) 22, 388, 1090, 1129, 1251
BstMBI GATC 5 cut(s) 19, 385, 1087, 1126, 1248
BstMWI GCNNNNNNNGC 9 cut(s) 50, 250, 351, 518, 533, 932, 1076, 1219, 1298
BstNI CCWGG 1 cut(s) 966
BstPI GGTNACC 1 cut(s) 793
BstSCI CCNGG 2 cut(s) 233, 964
BstSFI CTRYAG 1 cut(s) 1269
BstSLI GKGCMC 1 cut(s) 529
BstUI CGCG 2 cut(s) 354, 433
BstV1I GCAGC 4 cut(s) 601, 957, 1288, 1291
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 1149
BstYI RGATCY 1 cut(s) 385
Bsu36I CCTNAGG 1 cut(s) 390
BsuI GTATCC 1 cut(s) 1126
BsuRI GGCC 2 cut(s) 169, 369
BtgI CCRYGG 2 cut(s) 150, 1326
BtsCI GGATG 5 cut(s) 270, 345, 820, 850, 1399
BtsI GCAGTG 3 cut(s) 933, 1065, 1296
BtsIMutI CAGTG 8 cut(s) 36, 170, 379, 540, 933, 1065, 1296, 1314
BveI ACCTGC 1 cut(s) 1330
Cac8I GCNNGC 5 cut(s) 303, 484, 488, 620, 1294
CaiI CAGNNNCTG 1 cut(s) 1298
CciI TCATGA 1 cut(s) 120
CfoI GCGC 2 cut(s) 255, 1309
Cfr13I GGNCC 1 cut(s) 1160
CseI GACGC 1 cut(s) 1158
Csp6I GTAC 6 cut(s) 268, 378, 693, 829, 1023, 1233
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 6 cut(s) 121, 151, 790, 799, 811, 1091
CviQI GTAC 6 cut(s) 268, 378, 693, 829, 1023, 1233
DpnI GATC 5 cut(s) 21, 387, 1089, 1128, 1250
DpnII GATC 5 cut(s) 19, 385, 1087, 1126, 1248
DraIII CACNNNGTG 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 367
Eam1104I CTCTTC 3 cut(s) 231, 319, 1392
EarI CTCTTC 3 cut(s) 231, 319, 1392
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 4 cut(s) 150, 513, 1142, 1163
Eco24I GRGCYC 3 cut(s) 28, 140, 1451
Eco32I GATATC 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 1160
Eco53kI GAGCTC 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 390
Eco91I GGTNACC 1 cut(s) 793
EcoICRI GAGCTC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 793
EcoRII CCWGG 1 cut(s) 964
EcoRV GATATC 1 cut(s) 573
EcoT14I CCWWGG 4 cut(s) 150, 513, 1142, 1163
EcoT38I GRGCYC 3 cut(s) 28, 140, 1451
ErhI CCWWGG 4 cut(s) 150, 513, 1142, 1163
FaeI CATG 6 cut(s) 124, 154, 793, 802, 814, 1094
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 2 cut(s) 430, 1173
FatI CATG 6 cut(s) 120, 150, 789, 798, 810, 1090
FauI CCCGC 1 cut(s) 310
FauNDI CATATG 1 cut(s) 738
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 5 cut(s) 563, 590, 971, 1302, 1305
FokI GGATG 5 cut(s) 257, 332, 827, 857, 1406
FriOI GRGCYC 3 cut(s) 28, 140, 1451
Fsp4HI GCNGC 5 cut(s) 563, 590, 971, 1302, 1305
FspBI CTAG 1 cut(s) 1430
GlaI GCGC 2 cut(s) 254, 1308
GluI GCNGC 5 cut(s) 563, 590, 971, 1302, 1305
GsaI CCCAGC 1 cut(s) 451
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 2 cut(s) 169, 369
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 1158
HhaI GCGC 2 cut(s) 255, 1309
Hin1I GRCGYC 1 cut(s) 1169
Hin1II CATG 6 cut(s) 124, 154, 793, 802, 814, 1094
Hin6I GCGC 2 cut(s) 253, 1307
HinP1I GCGC 2 cut(s) 253, 1307
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 3 cut(s) 142, 920, 961
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 1132
Hpy166II GTNNAC 3 cut(s) 695, 829, 1421
Hpy188I TCNGA 4 cut(s) 13, 275, 558, 1501
Hpy8I GTNNAC 3 cut(s) 695, 829, 1421
HpyCH4III ACNGT 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 250, 351, 518, 533, 932, 1076, 1219, 1298
Hsp92I GRCGYC 1 cut(s) 1169
Hsp92II CATG 6 cut(s) 124, 154, 793, 802, 814, 1094
HspAI GCGC 2 cut(s) 253, 1307
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 5 cut(s) 19, 385, 1087, 1126, 1248
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 4 cut(s) 601, 957, 1288, 1291
LweI GCATC 3 cut(s) 354, 625, 805
MaeI CTAG 1 cut(s) 1430
MaeIII GTNAC 2 cut(s) 394, 793
MalI GATC 5 cut(s) 21, 387, 1089, 1128, 1250
MboI GATC 5 cut(s) 19, 385, 1087, 1126, 1248
MfeI CAATTG 1 cut(s) 1038
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 5 cut(s) 28, 140, 529, 888, 1451
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 5 cut(s) 835, 1038, 1050, 1188, 1202
MluNI TGGCCA 1 cut(s) 369
MlyI GAGTC 2 cut(s) 136, 914
MmeI TCCRAC 1 cut(s) 979
Mox20I TGGCCA 1 cut(s) 369
MscI TGGCCA 1 cut(s) 369
MseI TTAA 6 cut(s) 126, 249, 339, 956, 1110, 1187
MslI CAYNNNNRTG 1 cut(s) 1070
Msp20I TGGCCA 1 cut(s) 369
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 235, 966
MunI CAATTG 1 cut(s) 1038
Mva1269I GAATGC 2 cut(s) 490, 937
MvaI CCWGG 1 cut(s) 966
MvnI CGCG 2 cut(s) 354, 433
MwoI GCNNNNNNNGC 9 cut(s) 50, 250, 351, 518, 533, 932, 1076, 1219, 1298
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 738
NdeII GATC 5 cut(s) 19, 385, 1087, 1126, 1248
NlaIII CATG 6 cut(s) 124, 154, 793, 802, 814, 1094
NlaIV GGNNCC 4 cut(s) 387, 682, 949, 1161
NmeAIII GCCGAG 1 cut(s) 289
NspV TTCGAA 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 1070
PagI TCATGA 1 cut(s) 120
PctI GAATGC 2 cut(s) 490, 937
PfeI GAWTC 1 cut(s) 961
PkrI GCNGC 5 cut(s) 564, 591, 972, 1303, 1306
PleI GAGTC 2 cut(s) 136, 914
PpsI GAGTC 2 cut(s) 136, 914
PsiI TTATAA 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 964
PspEI GGTNACC 1 cut(s) 793
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 1 cut(s) 964
PspN4I GGNNCC 4 cut(s) 387, 682, 949, 1161
PspPI GGNCC 1 cut(s) 1160
PstNI CAGNNNCTG 1 cut(s) 1298
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 6 cut(s) 269, 379, 694, 830, 1024, 1234
RsaNI GTAC 6 cut(s) 268, 378, 693, 829, 1023, 1233
RseI CAYNNNNRTG 1 cut(s) 1070
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 6 cut(s) 126, 249, 339, 956, 1110, 1187
SatI GCNGC 5 cut(s) 563, 590, 971, 1302, 1305
Sau3AI GATC 5 cut(s) 19, 385, 1087, 1126, 1248
Sau96I GGNCC 1 cut(s) 1160
SchI GAGTC 2 cut(s) 136, 914
ScrFI CCNGG 2 cut(s) 235, 966
SduI GDGCHC 5 cut(s) 28, 140, 529, 888, 1451
SfaNI GCATC 3 cut(s) 354, 625, 805
SfcI CTRYAG 1 cut(s) 1269
SfuI TTCGAA 1 cut(s) 205
SinI GGWCC 1 cut(s) 1160
SmiMI CAYNNNNRTG 1 cut(s) 1070
SmlI CTYRAG 4 cut(s) 248, 626, 878, 1239
SmoI CTYRAG 4 cut(s) 248, 626, 878, 1239
Sse9I AATT 5 cut(s) 835, 1038, 1050, 1188, 1202
SsiI CCGC 4 cut(s) 53, 193, 303, 563
SspMI CTAG 1 cut(s) 1430
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 233, 964
StyI CCWWGG 4 cut(s) 150, 513, 1142, 1163
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 3 cut(s) 22, 140, 205
TaqII GACCGA 1 cut(s) 438
TasI AATT 5 cut(s) 835, 1038, 1050, 1188, 1202
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 1 cut(s) 961
Tru1I TTAA 6 cut(s) 126, 249, 339, 956, 1110, 1187
Tru9I TTAA 6 cut(s) 126, 249, 339, 956, 1110, 1187
TscAI CASTG 8 cut(s) 36, 170, 379, 547, 933, 1072, 1303, 1321
TseI GCWGC 4 cut(s) 589, 970, 1301, 1304
TspDTI ATGAA 3 cut(s) 109, 627, 1410
TspRI CASTG 8 cut(s) 36, 170, 379, 547, 933, 1072, 1303, 1321
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 1160
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XspI CTAG 1 cut(s) 1430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.