Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010030

Physical Location & Seq

Genomic Coordinates Reverse (-)

2767780 .. 2770974

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G026800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGCAAAGAGGAGCTGGTTCAATATAGTGAAGAGGTTCTTTGTTTCAGAGACACAGTCAAAGCAAAAAAATAAGGAGAAGAGAAGGAAATGGATTTTTGGAAAGCTTAAGATCAAAAGACTAACCTCATTAACTGCACCATCACCACCATCACCATTAAAACAAAGGGCACAAAATGAGGCAGAGGAAGAACAGAACAGGCATGCTCTGACTGTGGCTATTGCCAGCACTGCTGCAGCAGCTCATGCTGCTGCTGAGGTTGTGAGGCTCACTGGCACCCCACAGTCTTCTGAGAAATGTTTGGAGAAGGAAAAATCATTGTCAATCAATATTGCTCAAAATGAGGCCACTAAGTTGGCACATCAATGTGAGAGACAAGTACAAGAATCTGCAGCTGTGAAAATACAAACTGCCTTTAGAGGCTACCTTGCAAAGAAGGCTTTGAGAGCACTAAAGGGAATAGTGAAGCTTCAAGCGATTATTCGAGGACGGGCTGTGAGACGTCAAGCAATGACTACACTCAAGTGCTTGCAATCCATAATAAATATCCAATCACATGCCTGCGCTAGGAGATTCCAAACGATCGAAGACGCTCCCCATTGCGATGAACATAATCAGTTCCAAAGTTTGAGAGACAAGATAATAAGGATGGACTCAAACAGTCAAAGAAGGTGGGATGGCAGCCTCATTTCAAAGGAAGAGGCAGAGGCCTTGTTTCTAAGCAAGAAAGAAGCTATGCTTAAGAGAGAACGAATAAGGGAATACTCGTATACCCATCGGAAGTCAGCAGAATCAGAGAGAAACAAGGTAAATGGAAGATGGAGATACTGGTTGGACCAATGGGTAGATACACAACTTTCTAAAAGCAAAGAACTTGAGGACTTGGACACGGTTTTGGATTTGAATGCAAAGCGTAAAGAAGAATTTGGAGGAAAACAACTTAGGCTGAGAAACTTCCAAAGACAAAAGATTCAGATTGAAGGAATGGATTCTCCGGTGTTTGTACCAAGAAGATCTTCATACCACAGAAAGCAGTGTTCATTGGGAGATGAGAATTCCTTCACAAGCTCTCCTGTTGTTCCAACTTACATGGCTGCAACAAAATCTGCCAAGGCAAAAGCAAGGTCTCTAAGCTCCCCTAAGTTAAGGGCAGGCAGTTTAGATACTTACTCTGAGAGCTATTCACCATGCAAGAACAACATCTCTCTTATATCTTCTATCACCAGTGAAGTCCCAATTAGCAGCACTGGAAAAATATTGGGCAAGTGTAGTAGTATCCAGCAAAGATCTCCAAGCATGAAGGGCCTTCCAAGCCCTTTAAGATTAAAACAGACGGCAAAGGATCGAAGCTTCGATTGGGATAGACAAACTGCTTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

461

Amino Acids

52.43

Weight (kDa)

10.15

Isoelectric Point (pI)

68.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13460
fragaria_vesca	FvH4_7g02140 FvH4_7g02140
malus_domestica	MD02G1297300.v1.1
prunus_persica	Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1
pyrus_communis	pycom02g25050
rosa_chinensis	RchiOBHm_Chr1g0319351
rosa_laevigata	RLG00000030493
rosa_roxburghii	Rroxscaffold_4G00328550
rosa_rugosa	Rorug01G0027000 Rorug01G0027100
rosa_samantha	Rh1AG039200 Rh1BG036100 Rh1CG038100 Rh1DG031800
rosa_wichuraiana	Rw1G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	770
AclWI	GGATC	1 cut(s)	1350
AcsI	RAATTY	2 cut(s)	923, 1054
AcyI	GRCGYC	1 cut(s)	502
AfaI	GTAC	2 cut(s)	381, 1005
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflII	CTTAAG	2 cut(s)	107, 740
AgsI	TTSAA	5 cut(s)	22, 473, 693, 904, 980
AjuI	GAANNNNNNNTTGG	4 cut(s)	1000, 1032, 1339, 1371
AleI	CACNNNNGTG	1 cut(s)	523
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	5 cut(s)	44, 367, 493, 627, 1131
AlwI	GGATC	1 cut(s)	1350
AoxI	GGCC	3 cut(s)	345, 708, 1303
ApeKI	GCWGC	9 cut(s)	233, 236, 239, 248, 251, 392, 681, 1094, 1242
ApoI	RAATTY	2 cut(s)	923, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	1109, 1141
Asp700I	GAANNNNTTC	4 cut(s)	35, 988, 1015, 1058
AspLEI	GCGC	1 cut(s)	566
AspS9I	GGNCC	2 cut(s)	835, 1303
AsuHPI	GGTGA	4 cut(s)	135, 144, 1176, 1213
AvaII	GGWCC	1 cut(s)	835
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	279, 594
Bbv12I	GWGCWC	1 cut(s)	451
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	9 cut(s)	220, 235, 238, 248, 251, 404, 693, 1081, 1254
BccI	CCATC	6 cut(s)	148, 157, 643, 671, 783, 813
BceAI	ACGGC	1 cut(s)	1350
BciVI	GTATCC	1 cut(s)	1286
BcoDI	GTCTC	5 cut(s)	44, 367, 493, 627, 1131
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	2 cut(s)	234, 390
BfrI	CTTAAG	2 cut(s)	107, 740
BfuI	GTATCC	1 cut(s)	1286
BglII	AGATCT	2 cut(s)	1013, 1286
BisI	GCNGC	9 cut(s)	234, 237, 240, 249, 252, 393, 682, 1095, 1243
BlsI	GCNGC	9 cut(s)	235, 238, 241, 250, 253, 394, 683, 1096, 1244
Bme18I	GGWCC	1 cut(s)	835
BmgT120I	GGNCC	2 cut(s)	835, 1303
BmiI	GGNNCC	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	279, 594
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	506, 896
BsaHI	GRCGYC	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	1131
BsaJI	CCNNGG	1 cut(s)	1110
BsaWI	WCCGGW	1 cut(s)	994
BsaXI	ACNNNNNCTCC	2 cut(s)	1054, 1084
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	4 cut(s)	277, 833, 1224, 1252
Bse3DI	GCAATG	2 cut(s)	516, 598
BseDI	CCNNGG	1 cut(s)	1110
BseGI	GGATG	2 cut(s)	654, 682
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	2 cut(s)	516, 598
BseMII	CTCAG	4 cut(s)	246, 282, 938, 1164
BseNI	ACTGG	4 cut(s)	277, 833, 1224, 1252
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	9 cut(s)	220, 235, 238, 248, 251, 404, 693, 1081, 1254
BsgI	GTGCAG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	585
BshFI	GGCC	3 cut(s)	347, 710, 1305
BshNI	GGYRCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	995
BslFI	GGGAC	1 cut(s)	1217
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	5 cut(s)	44, 367, 493, 627, 1131
BsmBI	CGTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	1217
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	3 cut(s)	347, 710, 1305
Bso31I	GGTCTC	1 cut(s)	1131
Bsp1286I	GDGCHC	2 cut(s)	172, 451
Bsp143I	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
BspANI	GGCC	3 cut(s)	347, 710, 1305
BspCNI	CTCAG	4 cut(s)	247, 283, 939, 1165
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	2 cut(s)	238, 394
BspPI	GGATC	1 cut(s)	1350
BspT107I	GGYRCC	1 cut(s)	275
BspTI	CTTAAG	2 cut(s)	107, 740
BspTNI	GGTCTC	1 cut(s)	1131
BsrDI	GCAATG	2 cut(s)	516, 598
BsrI	ACTGG	4 cut(s)	277, 833, 1224, 1252
BssECI	CCNNGG	1 cut(s)	1110
BssMI	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
BssNAI	GTATAC	1 cut(s)	771
BssNI	GRCGYC	1 cut(s)	502
BssT1I	CCWWGG	1 cut(s)	1110
Bst1107I	GTATAC	1 cut(s)	771
Bst4CI	ACNGT	5 cut(s)	57, 214, 285, 662, 892
Bst6I	CTCTTC	3 cut(s)	26, 74, 693
BstACI	GRCGYC	1 cut(s)	502
BstAFI	CTTAAG	2 cut(s)	107, 740
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	5 cut(s)	204, 226, 530, 562, 1153
BstDEI	CTNAG	9 cut(s)	255, 291, 351, 719, 941, 947, 1130, 1140, 1173
BstENI	CCTNNNNNAGG	1 cut(s)	565
BstF5I	GGATG	2 cut(s)	654, 682
BstHHI	GCGC	1 cut(s)	566
BstKTI	GATC	5 cut(s)	114, 585, 1016, 1289, 1345
BstMAI	GTCTC	5 cut(s)	44, 367, 493, 627, 1131
BstMBI	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
BstMCI	CGRYCG	1 cut(s)	585
BstMWI	GCNNNNNNNGC	8 cut(s)	230, 239, 245, 248, 437, 446, 1302, 1311
BstNSI	RCATGY	2 cut(s)	206, 560
BstSFI	CTRYAG	2 cut(s)	234, 390
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	9 cut(s)	220, 235, 238, 248, 251, 404, 693, 1081, 1254
BstV2I	GAAGAC	2 cut(s)	279, 594
BstX2I	RGATCY	2 cut(s)	1013, 1286
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	2 cut(s)	1013, 1286
BstZ17I	GTATAC	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	1286
BsuRI	GGCC	3 cut(s)	347, 710, 1305
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	654, 682
BtsI	GCAGTG	2 cut(s)	228, 1040
BtsIMutI	CAGTG	5 cut(s)	228, 270, 1040, 1231, 1245
Cac8I	GCNNGC	5 cut(s)	204, 226, 530, 562, 1153
CfoI	GCGC	1 cut(s)	566
Cfr13I	GGNCC	2 cut(s)	835, 1303
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	380, 1004
CspCI	CAANNNNNGTGG	2 cut(s)	653, 688
CviAII	CATG	6 cut(s)	203, 245, 557, 1090, 1188, 1297
CviQI	GTAC	2 cut(s)	380, 1004
DdeI	CTNAG	9 cut(s)	255, 291, 351, 719, 941, 947, 1130, 1140, 1173
DpnI	GATC	5 cut(s)	113, 584, 1015, 1288, 1344
DpnII	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
Eam1104I	CTCTTC	3 cut(s)	26, 74, 693
EarI	CTCTTC	3 cut(s)	26, 74, 693
Eco130I	CCWWGG	1 cut(s)	1110
Eco147I	AGGCCT	1 cut(s)	710
Eco31I	GGTCTC	1 cut(s)	1131
Eco47I	GGWCC	1 cut(s)	835
EcoNI	CCTNNNNNAGG	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	1303
EcoRI	GAATTC	1 cut(s)	1054
EcoT14I	CCWWGG	1 cut(s)	1110
ErhI	CCWWGG	1 cut(s)	1110
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	6 cut(s)	206, 248, 560, 1093, 1191, 1300
FalI	AAGNNNNNCTT	6 cut(s)	23, 55, 723, 755, 1000, 1032
FaqI	GGGAC	1 cut(s)	1217
FatI	CATG	6 cut(s)	202, 244, 556, 1089, 1187, 1296
FblI	GTMKAC	1 cut(s)	770
Fnu4HI	GCNGC	9 cut(s)	234, 237, 240, 249, 252, 393, 682, 1095, 1243
FokI	GGATG	2 cut(s)	661, 689
Fsp4HI	GCNGC	9 cut(s)	234, 237, 240, 249, 252, 393, 682, 1095, 1243
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	565
GluI	GCNGC	9 cut(s)	234, 237, 240, 249, 252, 393, 682, 1095, 1243
HaeIII	GGCC	3 cut(s)	347, 710, 1305
HapII	CCGG	1 cut(s)	995
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	566
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	6 cut(s)	206, 248, 560, 1093, 1191, 1300
Hin6I	GCGC	1 cut(s)	564
HinP1I	GCGC	1 cut(s)	564
HindIII	AAGCTT	3 cut(s)	104, 467, 1348
HinfI	GANTC	6 cut(s)	386, 573, 653, 791, 970, 989
HpaII	CCGG	1 cut(s)	995
HphI	GGTGA	4 cut(s)	135, 144, 1176, 1213
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	7 cut(s)	49, 210, 292, 780, 796, 975, 1174
Hpy8I	GTNNAC	1 cut(s)	771
HpyAV	CCTTC	8 cut(s)	78, 301, 430, 663, 974, 1069, 1294, 1316
HpyCH4III	ACNGT	5 cut(s)	57, 214, 285, 662, 892
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	8 cut(s)	137, 236, 392, 431, 532, 908, 1097, 1191
HpyF10VI	GCNNNNNNNGC	8 cut(s)	230, 239, 245, 248, 437, 446, 1302, 1311
HpyF3I	CTNAG	9 cut(s)	255, 291, 351, 719, 941, 947, 1130, 1140, 1173
HpySE526I	ACGT	1 cut(s)	502
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	6 cut(s)	206, 248, 560, 1093, 1191, 1300
HspAI	GCGC	1 cut(s)	564
Kzo9I	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
LmnI	GCTCC	3 cut(s)	12, 598, 1139
Lsp1109I	GCAGC	9 cut(s)	220, 235, 238, 248, 251, 404, 693, 1081, 1254
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	502
MalI	GATC	5 cut(s)	113, 584, 1015, 1288, 1344
MboI	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
MflI	RGATCY	2 cut(s)	1013, 1286
MhlI	GDGCHC	2 cut(s)	172, 451
MluCI	AATT	3 cut(s)	923, 1054, 1236
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	2 cut(s)	813, 1106
MroXI	GAANNNNTTC	4 cut(s)	35, 988, 1015, 1058
MseI	TTAA	7 cut(s)	108, 131, 158, 741, 1145, 1319, 1325
MslI	CAYNNNNRTG	4 cut(s)	364, 366, 523, 603
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	2 cut(s)	107, 740
MspI	CCGG	1 cut(s)	995
Mva1269I	GAATGC	1 cut(s)	910
MwoI	GCNNNNNNNGC	8 cut(s)	230, 239, 245, 248, 437, 446, 1302, 1311
NdeII	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
NlaIII	CATG	6 cut(s)	206, 248, 560, 1093, 1191, 1300
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	2 cut(s)	206, 560
OliI	CACNNNNGTG	1 cut(s)	523
PaeI	GCATGC	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	710
PctI	GAATGC	1 cut(s)	910
PdmI	GAANNNNTTC	4 cut(s)	35, 988, 1015, 1058
PfeI	GAWTC	5 cut(s)	386, 573, 791, 970, 989
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	9 cut(s)	235, 238, 241, 250, 253, 394, 683, 1096, 1244
Ple19I	CGATCG	1 cut(s)	585
PleI	GAGTC	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	835, 1303
PstI	CTGCAG	2 cut(s)	238, 394
PsuI	RGATCY	2 cut(s)	1013, 1286
PsyI	GACNNNGTC	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	381, 1005
RsaNI	GTAC	2 cut(s)	380, 1004
RseI	CAYNNNNRTG	4 cut(s)	364, 366, 523, 603
SaqAI	TTAA	7 cut(s)	108, 131, 158, 741, 1145, 1319, 1325
SatI	GCNGC	9 cut(s)	234, 237, 240, 249, 252, 393, 682, 1095, 1243
Sau3AI	GATC	5 cut(s)	111, 582, 1013, 1286, 1342
Sau96I	GGNCC	2 cut(s)	835, 1303
SchI	GAGTC	1 cut(s)	647
SduI	GDGCHC	2 cut(s)	172, 451
SfcI	CTRYAG	2 cut(s)	234, 390
SinI	GGWCC	1 cut(s)	835
SmiMI	CAYNNNNRTG	4 cut(s)	364, 366, 523, 603
SmlI	CTYRAG	4 cut(s)	107, 521, 740, 875
SmoI	CTYRAG	4 cut(s)	107, 521, 740, 875
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	3 cut(s)	923, 1054, 1236
SseBI	AGGCCT	1 cut(s)	710
SspI	AATATT	2 cut(s)	331, 1257
SspMI	CTAG	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	710
StyI	CCWWGG	1 cut(s)	1110
TaaI	ACNGT	5 cut(s)	57, 214, 285, 662, 892
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	4 cut(s)	484, 585, 1345, 1353
TasI	AATT	3 cut(s)	923, 1054, 1236
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	5 cut(s)	386, 573, 791, 970, 989
Tru1I	TTAA	7 cut(s)	108, 131, 158, 741, 1145, 1319, 1325
Tru9I	TTAA	7 cut(s)	108, 131, 158, 741, 1145, 1319, 1325
TscAI	CASTG	5 cut(s)	235, 277, 1040, 1231, 1252
TseI	GCWGC	9 cut(s)	233, 236, 239, 248, 251, 392, 681, 1094, 1242
TspDTI	ATGAA	4 cut(s)	621, 1008, 1029, 1313
TspRI	CASTG	5 cut(s)	235, 277, 1040, 1231, 1252
Tth111I	GACNNNGTC	1 cut(s)	55
Vha464I	CTTAAG	2 cut(s)	107, 740
VpaK11BI	GGWCC	1 cut(s)	835
XagI	CCTNNNNNAGG	1 cut(s)	565
XapI	RAATTY	2 cut(s)	923, 1054
XceI	RCATGY	2 cut(s)	206, 560
XmiI	GTMKAC	1 cut(s)	770
XmnI	GAANNNNTTC	4 cut(s)	35, 988, 1015, 1058
XspI	CTAG	1 cut(s)	567
ZraI	GACGTC	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.