RLG00000030493

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010030
Physical Location & Seq
Forward (+)
62435021 .. 62436961
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030493

Sequence Viewer

Length: 1371 bp
ATGGCAAAGAAGAGCTGGTTCAGTATAGTTAAAAGGTTCTTTGTTTCAGACACACAGACAAAGCAAAATAATAAGGAGAAGAGAAGAAGATGGGTTTTCGGAAGGCTTAAGATTAAAAGGTTACCCTCAATAACAGCACCAGCACCACCATCACCATTAAAGGAAAGGACACTCAATGAGGCAGAGGAAGAACAAAGCAAGCATGCTCTGAATGTGGCCATTGCGAGCACTGCTGCTGCTGAAGCTGCTGTTGCAGCTGCTCATGCTGCTGCTGAGGTCGTGTGGCTCACTAGTCTTAAAGCTCGCAATGAGGCCACTGAATTGGAACATCAATGTGAGAAGGAAACACAAGAACTTGCAGCTGTTAAAATTCAAACCACCTTCCGCGGTTACCTTGCAAGGAAAGCTTTGAGGGCACTAAGGGGAATAGTGAAGCTCCAAGCTATTATTCGAGGACAAGCTGTGAGACAACAAGCAATGACTACACTCAAGTGCTTGCAGTCTATAATAAACATCCAATCGCACGTATGTGCCAGGAGATTCCAAACCAAAGAAGGAGATACTTATAACTATGATGAATATAACGATCAGTTCCAAAATTTGAGGGACAAGATAATAACGATGGACTCAAACAGCCAAAGAAGGTGGGATGACAGACTTGTTTCAAAGGAAGAGGCAGAGGCCTTGTTTATGAGCAAGAAAGAGGCTATGATTAAGAGAGAAAGAATAAAGGACTATTGGTATAGCCATAGGAAATCAGCAGAATCAGAAAGAAAAAAGGTAAATGGAAGATGGAGATACTGGTTGGACCAATGGGTTGACACCCAAATTTCTAAAAGCAAAGAACTTGAAGACTTGGAAACAGTTTTGGCTTCGAATAGAAAAGAGGAGTTTGGAGGTGGAAAACAAGTTAGGCTTAGAAACCTGCAAAGACAGAATAGTCATCTGATTAATGAAGGAATGGATTCTCCAAGAAAGTCATCCTTACACCACAGGAAGCAGTGTTCATTGGGAGATGAAAATTCCTTTACAAGATCTCCTATTGTTCCTACTTACATGGCCGCAACAAAATCTGCTAAATTGAAAGCGAGGTCGTTAAGCTCCCCTAAATTAAGGCCATGGAGTTTGGATACTTGCTCTGAGAGCTATTCACCATGCAAGAACAACAACATCTCTCTTATATCTTCCATCAACAGTGAAGTGCCACTTATTAGTTCCAGAAGGATTGGCAAGTCCGGTGGTATCCAGCAACGATCTCCGAGCATGAAGGGCCTTCCAAGTCCAGTAAAATCTAGCCAGACGATGAAGGATCGTAGCATTAATTCAGAGGGCTCTGTATCATATTGGGATAGACAGAGTACTTACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

457

Amino Acids

52.23

Weight (kDa)

9.97

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 330 - 396 6.5e-09 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 567
AasI GACNNNNNNGTC 1 cut(s) 939
Acc36I ACCTGC 1 cut(s) 933
AccII CGCG 1 cut(s) 387
AciI CCGC 3 cut(s) 385, 387, 1062
AclWI GGATC 1 cut(s) 1317
AcoI YGGCCR 2 cut(s) 216, 1059
AcsI RAATTY 4 cut(s) 369, 598, 828, 1021
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 1360
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 4 cut(s) 374, 666, 851, 1084
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 1 cut(s) 533
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AleI CACNNNNGTG 2 cut(s) 490, 528
AloI GAACNNNNNNTCC 2 cut(s) 988, 1020
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 1 cut(s) 1317
AoxI GGCC 6 cut(s) 216, 312, 681, 1059, 1115, 1270
ApeKI GCWGC 8 cut(s) 233, 236, 245, 254, 257, 266, 269, 359
ApoI RAATTY 4 cut(s) 369, 598, 828, 1021
AseI ATTAAT 2 cut(s) 951, 1320
Asp700I GAANNNNTTC 1 cut(s) 964
AspS9I GGNCC 2 cut(s) 808, 1270
AsuHPI GGTGA 2 cut(s) 144, 1143
AsuII TTCGAA 1 cut(s) 875
AvaII GGWCC 1 cut(s) 808
BaeGI GKGCMC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 1334
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 8 cut(s) 220, 223, 232, 244, 253, 256, 266, 371
BccI CCATC 5 cut(s) 84, 157, 616, 786, 1196
BciT130I CCWGG 1 cut(s) 535
BciVI GTATCC 2 cut(s) 1123, 1253
BcoDI GTCTC 1 cut(s) 460
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 2 cut(s) 291, 1293
BfrI CTTAAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 933
BfuI GTATCC 2 cut(s) 1123, 1253
BglII AGATCT 1 cut(s) 1034
BisI GCNGC 9 cut(s) 234, 237, 246, 255, 258, 267, 270, 360, 1062
BlsI GCNGC 9 cut(s) 235, 238, 247, 256, 259, 268, 271, 361, 1063
BmcAI AGTACT 1 cut(s) 1360
Bme1390I CCNGG 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 2 cut(s) 808, 1270
BmrFI CCNGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 858
Bpu10I CCTNAGC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 875
BpuEI CTTGAG 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 385, 1118
BsaWI WCCGGW 1 cut(s) 1235
BsaXI ACNNNNNCTCC 2 cut(s) 1021, 1051
Bse1I ACTGG 2 cut(s) 806, 1283
Bse3DI GCAATG 3 cut(s) 219, 313, 483
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 385, 1118
BseGI GGATG 3 cut(s) 513, 655, 980
BseMI GCAATG 3 cut(s) 219, 313, 483
BseMII CTCAG 2 cut(s) 264, 1131
BseNI ACTGG 2 cut(s) 806, 1283
BseRI GAGGAG 1 cut(s) 902
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 8 cut(s) 220, 223, 232, 244, 253, 256, 266, 371
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 6 cut(s) 218, 314, 683, 1061, 1117, 1272
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 1236
BslFI GGGAC 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 6 cut(s) 218, 314, 683, 1061, 1117, 1272
Bsp119I TTCGAA 1 cut(s) 875
Bsp1286I GDGCHC 3 cut(s) 230, 418, 1334
Bsp143I GATC 4 cut(s) 586, 1034, 1253, 1309
Bsp19I CCATGG 1 cut(s) 1118
BspACI CCGC 3 cut(s) 385, 387, 1062
BspANI GGCC 6 cut(s) 218, 314, 683, 1061, 1117, 1272
BspCNI CTCAG 2 cut(s) 265, 1132
BspFNI CGCG 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 933
BspPI GGATC 1 cut(s) 1317
BspQI GCTCTTC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 875
BspTI CTTAAG 1 cut(s) 107
BsrDI GCAATG 3 cut(s) 219, 313, 483
BsrI ACTGG 2 cut(s) 806, 1283
BssECI CCNNGG 2 cut(s) 385, 1118
BssMI GATC 4 cut(s) 586, 1034, 1253, 1309
BssT1I CCWWGG 1 cut(s) 1118
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 2 cut(s) 865, 1196
Bst6I CTCTTC 3 cut(s) 5, 74, 666
BstAFI CTTAAG 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 875
BstC8I GCNNGC 5 cut(s) 200, 204, 226, 304, 497
BstDEI CTNAG 4 cut(s) 273, 419, 917, 1140
BstDSI CCRYGG 2 cut(s) 385, 1118
BstEII GGTNACC 2 cut(s) 120, 389
BstF5I GGATG 3 cut(s) 513, 655, 980
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 4 cut(s) 589, 1037, 1256, 1312
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 4 cut(s) 586, 1034, 1253, 1309
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 206
BstPI GGTNACC 2 cut(s) 120, 389
BstSCI CCNGG 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 8 cut(s) 220, 223, 232, 244, 253, 256, 266, 371
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 1 cut(s) 1034
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 1034
BsuI GTATCC 2 cut(s) 1123, 1253
BsuRI GGCC 6 cut(s) 218, 314, 683, 1061, 1117, 1272
BtgI CCRYGG 2 cut(s) 385, 1118
BtsCI GGATG 3 cut(s) 513, 655, 980
BtsI GCAGTG 2 cut(s) 228, 1007
BtsIMutI CAGTG 4 cut(s) 228, 315, 1007, 1201
BveI ACCTGC 1 cut(s) 933
Cac8I GCNNGC 5 cut(s) 200, 204, 226, 304, 497
Cfr13I GGNCC 2 cut(s) 808, 1270
Cfr42I CCGCGG 1 cut(s) 388
Csp6I GTAC 1 cut(s) 1359
CspCI CAANNNNNGTGG 4 cut(s) 626, 661, 1219, 1254
CviAII CATG 6 cut(s) 203, 263, 1057, 1119, 1155, 1264
CviQI GTAC 1 cut(s) 1359
DdeI CTNAG 4 cut(s) 273, 419, 917, 1140
DpnI GATC 4 cut(s) 588, 1036, 1255, 1311
DpnII GATC 4 cut(s) 586, 1034, 1253, 1309
DrdI GACNNNNNNGTC 1 cut(s) 939
DseDI GACNNNNNNGTC 1 cut(s) 939
EaeI YGGCCR 2 cut(s) 216, 1059
Eam1104I CTCTTC 3 cut(s) 5, 74, 666
EarI CTCTTC 3 cut(s) 5, 74, 666
Eco130I CCWWGG 1 cut(s) 1118
Eco147I AGGCCT 1 cut(s) 683
Eco24I GRGCYC 1 cut(s) 1334
Eco47I GGWCC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 120, 389
EcoO109I RGGNCCY 1 cut(s) 1270
EcoO65I GGTNACC 2 cut(s) 120, 389
EcoRII CCWGG 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 1118
EcoT38I GRGCYC 1 cut(s) 1334
ErhI CCWWGG 1 cut(s) 1118
FaeI CATG 6 cut(s) 206, 266, 1060, 1122, 1158, 1267
FalI AAGNNNNNCTT 8 cut(s) 391, 423, 900, 932, 968, 1000, 1191, 1223
FaqI GGGAC 1 cut(s) 620
FatI CATG 6 cut(s) 202, 262, 1056, 1118, 1154, 1263
Fnu4HI GCNGC 9 cut(s) 234, 237, 246, 255, 258, 267, 270, 360, 1062
FokI GGATG 3 cut(s) 500, 662, 967
FriOI GRGCYC 1 cut(s) 1334
Fsp4HI GCNGC 9 cut(s) 234, 237, 246, 255, 258, 267, 270, 360, 1062
FspBI CTAG 2 cut(s) 291, 1293
GluI GCNGC 9 cut(s) 234, 237, 246, 255, 258, 267, 270, 360, 1062
HaeIII GGCC 6 cut(s) 218, 314, 683, 1061, 1117, 1272
HapII CCGG 1 cut(s) 1236
Hin1II CATG 6 cut(s) 206, 266, 1060, 1122, 1158, 1267
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 4 cut(s) 540, 626, 764, 965
HpaII CCGG 1 cut(s) 1236
HphI GGTGA 2 cut(s) 144, 1143
Hpy166II GTNNAC 1 cut(s) 820
Hpy188I TCNGA 8 cut(s) 49, 101, 210, 769, 948, 1141, 1260, 1327
Hpy188III TCNNGA 1 cut(s) 1218
Hpy8I GTNNAC 1 cut(s) 820
HpyCH4III ACNGT 2 cut(s) 865, 1196
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 6 cut(s) 254, 359, 398, 499, 928, 1158
HpyF3I CTNAG 4 cut(s) 273, 419, 917, 1140
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 6 cut(s) 206, 266, 1060, 1122, 1158, 1267
KspI CCGCGG 1 cut(s) 388
Kzo9I GATC 4 cut(s) 586, 1034, 1253, 1309
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 441, 1106
Lsp1109I GCAGC 8 cut(s) 220, 223, 232, 244, 253, 256, 266, 371
MaeI CTAG 2 cut(s) 291, 1293
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 2 cut(s) 120, 389
MalI GATC 4 cut(s) 588, 1036, 1255, 1311
MboI GATC 4 cut(s) 586, 1034, 1253, 1309
MboII GAAGA 9 cut(s) 22, 91, 96, 99, 200, 683, 801, 863, 1176
MflI RGATCY 1 cut(s) 1034
MhlI GDGCHC 3 cut(s) 230, 418, 1334
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 8 cut(s) 320, 369, 598, 828, 1021, 1079, 1109, 1321
MluNI TGGCCA 1 cut(s) 218
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 1 cut(s) 786
Mox20I TGGCCA 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 964
MscI TGGCCA 1 cut(s) 218
MslI CAYNNNNRTG 3 cut(s) 333, 490, 528
Msp20I TGGCCA 1 cut(s) 218
MspA1I CMGCKG 3 cut(s) 257, 362, 387
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 1 cut(s) 1236
MspR9I CCNGG 1 cut(s) 535
MvaI CCWGG 1 cut(s) 535
MvnI CGCG 1 cut(s) 387
NcoI CCATGG 1 cut(s) 1118
NdeII GATC 4 cut(s) 586, 1034, 1253, 1309
NlaIII CATG 6 cut(s) 206, 266, 1060, 1122, 1158, 1267
NspI RCATGY 1 cut(s) 206
NspV TTCGAA 1 cut(s) 875
OliI CACNNNNGTG 2 cut(s) 490, 528
PaeI GCATGC 1 cut(s) 206
PceI AGGCCT 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 3 cut(s) 540, 764, 965
PkrI GCNGC 9 cut(s) 235, 238, 247, 256, 259, 268, 271, 361, 1063
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
Ppu21I YACGTR 1 cut(s) 526
PshBI ATTAAT 2 cut(s) 951, 1320
PsiI TTATAA 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 533
PspEI GGTNACC 2 cut(s) 120, 389
PspGI CCWGG 1 cut(s) 533
PspPI GGNCC 2 cut(s) 808, 1270
PsuI RGATCY 1 cut(s) 1034
PvuII CAGCTG 2 cut(s) 257, 362
RsaI GTAC 1 cut(s) 1360
RsaNI GTAC 1 cut(s) 1359
RseI CAYNNNNRTG 3 cut(s) 333, 490, 528
SacII CCGCGG 1 cut(s) 388
SapI GCTCTTC 1 cut(s) 5
SatI GCNGC 9 cut(s) 234, 237, 246, 255, 258, 267, 270, 360, 1062
Sau3AI GATC 4 cut(s) 586, 1034, 1253, 1309
Sau96I GGNCC 2 cut(s) 808, 1270
ScaI AGTACT 1 cut(s) 1360
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 535
SduI GDGCHC 3 cut(s) 230, 418, 1334
Sfr303I CCGCGG 1 cut(s) 388
SfuI TTCGAA 1 cut(s) 875
SgrBI CCGCGG 1 cut(s) 388
SinI GGWCC 1 cut(s) 808
SmiMI CAYNNNNRTG 3 cut(s) 333, 490, 528
SmlI CTYRAG 2 cut(s) 107, 488
SmoI CTYRAG 2 cut(s) 107, 488
SpeI ACTAGT 1 cut(s) 290
SphI GCATGC 1 cut(s) 206
Sse9I AATT 8 cut(s) 320, 369, 598, 828, 1021, 1079, 1109, 1321
SseBI AGGCCT 1 cut(s) 683
SsiI CCGC 3 cut(s) 385, 387, 1062
SspMI CTAG 2 cut(s) 291, 1293
StuI AGGCCT 1 cut(s) 683
StyD4I CCNGG 1 cut(s) 533
StyI CCWWGG 1 cut(s) 1118
TaaI ACNGT 2 cut(s) 865, 1196
TaiI ACGT 1 cut(s) 528
TaqI TCGA 2 cut(s) 451, 875
TasI AATT 8 cut(s) 320, 369, 598, 828, 1021, 1079, 1109, 1321
TatI WGTACW 1 cut(s) 1358
TauI GCSGC 1 cut(s) 1064
TfiI GAWTC 3 cut(s) 540, 764, 965
TscAI CASTG 4 cut(s) 235, 322, 1007, 1201
TseI GCWGC 8 cut(s) 233, 236, 245, 254, 257, 266, 269, 359
TspDTI ATGAA 6 cut(s) 591, 969, 996, 1032, 1280, 1319
TspRI CASTG 4 cut(s) 235, 322, 1007, 1201
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 808
VspI ATTAAT 2 cut(s) 951, 1320
XapI RAATTY 4 cut(s) 369, 598, 828, 1021
XceI RCATGY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 2 cut(s) 291, 1293
ZrmI AGTACT 1 cut(s) 1360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.