Rh1BG036100

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010030
Physical Location & Seq
Reverse (-)
4815784 .. 4819085
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG036100.1

Sequence Viewer

Length: 1029 bp
ATGAAACTTACCACTGCTGCATGGTTTCTGATGAATATTTGTTGGAGGACATTGCAGGCAAGGAAAGCTTTGAGGGCACTAAGGGGAATAGTGAAGCTCCAAGCTATTATTCGAGGACAAGCTGTGAGACGACAAGCAATGACTACACTCAAGTGCTTGCAGTCTATAATAAACATCCAATCGCACGTATGTGCCAGGAGATTCCAAACCAAAGAAGGAGATAGTTATAACTATGATGAATATAATGATCAGTTCCAAAATTTGAGGGACAAGATTATAAGGATGGACTCAAACAGCCAAAGAAGGTGGGATGACAGACTTGTTTCAAAGGAAGAGGCAGAGGCCTTGTTTATGAGCAAGAAAGAGGCTATGCTTAAGAGAGAAAGAATAAAGGAATATTGGTATAGCCATAGGAAATCAGCAGAATCAGAAAGAAAAAAGGTAAATGGAAGATGGAGATACTGGTTGGACCAATGGGTTGATACCCAAATTTCTAAAAGCAAAGAACTTGAAGACTTGGACACAGTTTTGGCTTCGAATAGAAAAGAGGACTTTGGAGGTGGAAAACAAGTTAGGCTTAGAAACCTGCAAAGACAGAATAGTCATCTGATTAATGAAGGAATGGATTCTCCAAGAAAGTCATCCTTACACCACAGGAAGCAGTGTTCATTGGGAGATGAAAATTCCTTTACAAGATCACCTATTGTTCCTACTTACATGGCCGCAACAAAATCTGCTAAATTGAAAGCGAGGTCTTTAAGCTCCCCTAAATCAAGGCCATGGAGTTTGGATACTTGCTCTGAGAGCTATTCACCATGCAAGAACAACAACATCTCTCTTATATCTTCCATCAACAGTGAAGTGCCACTAAGTTCCAGAAGGATTGGCAAGTCCGGTGGTATCCAGCAACGATCTTCGAGCATGAAGGGCCTTCCAAGTCCAGTAAAATCTAGCCAGACGATGAAGGATCGTAGCATTAATTCAGAGTGCTCTGTATCATATTGTGATAGACAGAGTACTTACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

342

Amino Acids

39.61

Weight (kDa)

10.04

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 217 - 288 9.8e-09 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 228, 278
AasI GACNNNNNNGTC 1 cut(s) 600
Acc36I ACCTGC 1 cut(s) 594
AciI CCGC 1 cut(s) 723
AclWI GGATC 1 cut(s) 975
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 3 cut(s) 259, 489, 682
AfaI GTAC 1 cut(s) 1018
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 327, 512, 745
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AleI CACNNNNGTG 2 cut(s) 151, 189
AloI GAACNNNNNNTCC 2 cut(s) 649, 681
AluBI AGCT 6 cut(s) 68, 97, 104, 122, 762, 807
AluI AGCT 6 cut(s) 68, 97, 104, 122, 762, 807
Alw21I GWGCWC 1 cut(s) 992
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 975
AoxI GGCC 4 cut(s) 342, 720, 776, 928
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 3 cut(s) 259, 489, 682
AseI ATTAAT 2 cut(s) 612, 978
Asp700I GAANNNNTTC 1 cut(s) 625
AspS9I GGNCC 2 cut(s) 469, 928
AsuHPI GGTGA 2 cut(s) 690, 804
AsuII TTCGAA 1 cut(s) 536
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 992
BbvI GCAGC 1 cut(s) 4
BccI CCATC 3 cut(s) 277, 447, 857
BciT130I CCWGG 1 cut(s) 196
BciVI GTATCC 2 cut(s) 784, 911
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 951
BfrI CTTAAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 594
BfuI GTATCC 2 cut(s) 784, 911
BisI GCNGC 2 cut(s) 18, 723
BlsI GCNGC 2 cut(s) 19, 724
BmcAI AGTACT 1 cut(s) 1018
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 469, 928
BmrFI CCNGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 779
BsaWI WCCGGW 1 cut(s) 893
Bse1I ACTGG 2 cut(s) 467, 941
Bse3DI GCAATG 2 cut(s) 50, 144
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 779
BseGI GGATG 4 cut(s) 174, 288, 316, 641
BseMI GCAATG 2 cut(s) 50, 144
BseMII CTCAG 1 cut(s) 792
BseNI ACTGG 2 cut(s) 467, 941
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 4 cut(s) 344, 722, 778, 930
BsiHKAI GWGCWC 1 cut(s) 992
BsiSI CCGG 1 cut(s) 894
BslFI GGGAC 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 344, 722, 778, 930
Bsp119I TTCGAA 1 cut(s) 536
Bsp1286I GDGCHC 2 cut(s) 79, 992
Bsp143I GATC 4 cut(s) 247, 695, 911, 967
Bsp19I CCATGG 1 cut(s) 779
BspACI CCGC 1 cut(s) 723
BspANI GGCC 4 cut(s) 344, 722, 778, 930
BspCNI CTCAG 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 594
BspPI GGATC 1 cut(s) 975
BspT104I TTCGAA 1 cut(s) 536
BspTI CTTAAG 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 50, 144
BsrI ACTGG 2 cut(s) 467, 941
BssECI CCNNGG 1 cut(s) 779
BssMI GATC 4 cut(s) 247, 695, 911, 967
BssT1I CCWWGG 1 cut(s) 779
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 526, 857
Bst6I CTCTTC 1 cut(s) 327
BstAFI CTTAAG 1 cut(s) 374
BstBAI YACGTR 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 57, 158
BstDEI CTNAG 4 cut(s) 80, 578, 801, 869
BstDSI CCRYGG 1 cut(s) 779
BstF5I GGATG 4 cut(s) 174, 288, 316, 641
BstKTI GATC 4 cut(s) 250, 698, 914, 970
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 4 cut(s) 247, 695, 911, 967
BstMWI GCNNNNNNNGC 4 cut(s) 65, 74, 804, 927
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 519
BsuI GTATCC 2 cut(s) 784, 911
BsuRI GGCC 4 cut(s) 344, 722, 778, 930
BtgI CCRYGG 1 cut(s) 779
BtsCI GGATG 4 cut(s) 174, 288, 316, 641
BtsI GCAGTG 2 cut(s) 12, 668
BtsIMutI CAGTG 3 cut(s) 12, 668, 862
BveI ACCTGC 1 cut(s) 594
Cac8I GCNNGC 2 cut(s) 57, 158
Cfr13I GGNCC 2 cut(s) 469, 928
Csp6I GTAC 1 cut(s) 1017
CspCI CAANNNNNGTGG 4 cut(s) 287, 322, 877, 912
CviAII CATG 5 cut(s) 21, 718, 780, 816, 922
CviQI GTAC 1 cut(s) 1017
DdeI CTNAG 4 cut(s) 80, 578, 801, 869
DpnI GATC 4 cut(s) 249, 697, 913, 969
DpnII GATC 4 cut(s) 247, 695, 911, 967
DrdI GACNNNNNNGTC 1 cut(s) 600
DseDI GACNNNNNNGTC 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 779
Eco147I AGGCCT 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 928
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 779
ErhI CCWWGG 1 cut(s) 779
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 5 cut(s) 24, 721, 783, 819, 925
FalI AAGNNNNNCTT 6 cut(s) 52, 84, 561, 593, 629, 661
FaqI GGGAC 1 cut(s) 281
FatI CATG 5 cut(s) 20, 717, 779, 815, 921
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 18, 723
FokI GGATG 4 cut(s) 161, 295, 323, 628
Fsp4HI GCNGC 2 cut(s) 18, 723
FspBI CTAG 1 cut(s) 951
GluI GCNGC 2 cut(s) 18, 723
HaeIII GGCC 4 cut(s) 344, 722, 778, 930
HapII CCGG 1 cut(s) 894
Hin1II CATG 5 cut(s) 24, 721, 783, 819, 925
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 4 cut(s) 201, 287, 425, 626
HpaII CCGG 1 cut(s) 894
HphI GGTGA 2 cut(s) 690, 804
Hpy188I TCNGA 5 cut(s) 30, 430, 609, 802, 985
Hpy188III TCNNGA 1 cut(s) 876
HpyAV CCTTC 7 cut(s) 209, 297, 611, 873, 919, 941, 958
HpyCH4III ACNGT 2 cut(s) 526, 857
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 20, 55, 160, 589, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 74, 804, 927
HpyF3I CTNAG 4 cut(s) 80, 578, 801, 869
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 5 cut(s) 24, 721, 783, 819, 925
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 247, 695, 911, 967
LmnI GCTCC 2 cut(s) 102, 767
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 951
MaeII ACGT 1 cut(s) 186
MalI GATC 4 cut(s) 249, 697, 913, 969
MboI GATC 4 cut(s) 247, 695, 911, 967
MboII GAAGA 5 cut(s) 344, 462, 524, 837, 906
MhlI GDGCHC 2 cut(s) 79, 992
MluCI AATT 5 cut(s) 259, 489, 682, 740, 979
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 23, 447
MroXI GAANNNNTTC 1 cut(s) 625
MseI TTAA 4 cut(s) 375, 612, 758, 978
MslI CAYNNNNRTG 2 cut(s) 151, 189
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 4 cut(s) 65, 74, 804, 927
NcoI CCATGG 1 cut(s) 779
NdeII GATC 4 cut(s) 247, 695, 911, 967
NlaIII CATG 5 cut(s) 24, 721, 783, 819, 925
NspV TTCGAA 1 cut(s) 536
OliI CACNNNNGTG 2 cut(s) 151, 189
PceI AGGCCT 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 625
PfeI GAWTC 3 cut(s) 201, 425, 626
PkrI GCNGC 2 cut(s) 19, 724
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Ppu21I YACGTR 1 cut(s) 187
PshBI ATTAAT 2 cut(s) 612, 978
PsiI TTATAA 2 cut(s) 228, 278
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspPI GGNCC 2 cut(s) 469, 928
RsaI GTAC 1 cut(s) 1018
RsaNI GTAC 1 cut(s) 1017
RseI CAYNNNNRTG 2 cut(s) 151, 189
SaqAI TTAA 4 cut(s) 375, 612, 758, 978
SatI GCNGC 2 cut(s) 18, 723
Sau3AI GATC 4 cut(s) 247, 695, 911, 967
Sau96I GGNCC 2 cut(s) 469, 928
ScaI AGTACT 1 cut(s) 1018
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 79, 992
SfuI TTCGAA 1 cut(s) 536
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 2 cut(s) 151, 189
SmlI CTYRAG 2 cut(s) 149, 374
SmoI CTYRAG 2 cut(s) 149, 374
Sse9I AATT 5 cut(s) 259, 489, 682, 740, 979
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 1 cut(s) 723
SspI AATATT 2 cut(s) 37, 398
SspMI CTAG 1 cut(s) 951
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 779
TaaI ACNGT 2 cut(s) 526, 857
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 112, 536, 917
TasI AATT 5 cut(s) 259, 489, 682, 740, 979
TatI WGTACW 1 cut(s) 1016
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 3 cut(s) 201, 425, 626
Tru1I TTAA 4 cut(s) 375, 612, 758, 978
Tru9I TTAA 4 cut(s) 375, 612, 758, 978
TscAI CASTG 3 cut(s) 19, 668, 862
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 8 cut(s) 17, 47, 252, 630, 657, 693, 938, 977
TspRI CASTG 3 cut(s) 19, 668, 862
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 469
VspI ATTAAT 2 cut(s) 612, 978
XapI RAATTY 3 cut(s) 259, 489, 682
XmnI GAANNNNTTC 1 cut(s) 625
XspI CTAG 1 cut(s) 951
ZrmI AGTACT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.