Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010030

Physical Location & Seq

Genomic Coordinates Forward (+)

4635027 .. 4637167

Gene Structure 2141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG031800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCAAAGAAGAGCTGGTTCAGTATAGTTAAAAGCTTCTTTGTTTCAGACACACAGACAAAGCAAAATAATAAGGAGAAGAGAAGAAGATGGGTTTTCGGAAGGCTTAAGATTAAAAGGTTACCCTCAATAACAGCACCAGCACCACCATCACCATTAAAGGAAAGGACACTCAATGAGGCAGAGGAAGAACAAAGCAAGCATGCTCTGAATGTGGCCATTGCGAGCACTGCTGCTGCAGAAGCTGCTGTTGCAGCTGCTCATGCTGCTGCTGAGGTCGTGTGGCTCACTGGTCTTAAAGCTCGAAATGAGGCCACTGAATTGGAACATCAATGTGAGAAGGAAACACAAGAACTTGCTGCTGTTAAAATTCAAACCGCCTTCCGCGGTTACCTTGCAAGGAAAGCTTTGAGGGCACTAAGGGGAATAGTGAAGCTCCAAGCTATTATTCGAGGACAAACTGTGAGACGACAAGCAATGACTACACTCAAGTGCTTGCAGTCTATAATAAACATCCAATCGCACGTATGTGCCAGGAGATTCCAAACCAAAGAAGGAGATACTTATAACTATGATGAATATAATGATCAGTTCCAAAATTTGAGGGACAAGATAATAAGGATGGACTCAAACAGCCAAAGAAGGTGGGATGACAGACTTGTTTCAAAGGAAGAGGCAGAGGCCTTGTTTATGAGCAAGAAAGAGGCTATGATTAAGAGAGAAAGAATAAAGGAATATTGGTATAGCCATAGGAAATCAGCAGAATCAGAAAGAAAAAAGGTAAATGGAAGATGGAGATACTGGTTGGACCAATGGGTTGATACCCAAATTTCTAAAAGCAAAGAACTTGAAGACTTGGACACAGTTTTGGCTTCGAATAGAAAAGAGGAGTTTGGAGGTGGAAAACAAGTTAGGCTTAGAAACCTGCAAAGACAGAATAGTCATCTGATTAATGAAGGAATGGATTCTCCAAGAAAGTCATCGTTACACCACAGGAAGCAGTGTTCATTGGGAGATGAAAATTCCTTTACAAGATCTCCTATTGTTCCTACTTACATGGCCGCAACAAAATCTGCTAAATTGAAAGCGAGGTCTTTAAGCTCCCCTAAATTAAGGCCATGGAGTTTGGATACTTGCTCTGAGAGCTATTCACCATGCAAGAACAACAACATCTCTCTTATATCTTCCATCAACAGTGAAGTGCCACTAAGTTCCAGAAGGATTGGCAAGTCCGGTGGTATCCAGCAACGATCTCCGAGCATGAAGGGCCTTCCAAGTCCAGTAAAATCTAGCCAGACAATGAAGGATCGTAGCATTAATTCAGAGTGCTCTGTATCATATTGGGATAGACAGAGTACTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

455

Amino Acids

52.13

Weight (kDa)

9.99

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	120 - 138	8.8e-06	IQ calmodulin-binding motif
DUF4005	PF13178	330 - 399	7.9e-09	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13460
fragaria_vesca	FvH4_7g02140 FvH4_7g02140
malus_domestica	MD02G1297300.v1.1
prunus_persica	Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1
pyrus_communis	pycom02g25050
rosa_chinensis	RchiOBHm_Chr1g0319351
rosa_laevigata	RLG00000030493
rosa_roxburghii	Rroxscaffold_4G00328550
rosa_rugosa	Rorug01G0027000 Rorug01G0027100
rosa_samantha	Rh1AG039200 Rh1BG036100 Rh1CG038100 Rh1DG031800
rosa_wichuraiana	Rw1G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AasI	GACNNNNNNGTC	1 cut(s)	939
Acc36I	ACCTGC	1 cut(s)	933
AccII	CGCG	1 cut(s)	387
AciI	CCGC	4 cut(s)	378, 385, 387, 1062
AclWI	GGATC	1 cut(s)	1314
AcoI	YGGCCR	2 cut(s)	216, 1059
AcsI	RAATTY	4 cut(s)	369, 598, 828, 1021
AfaI	GTAC	1 cut(s)	1357
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	374, 666, 851, 1084
AjnI	CCWGG	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AleI	CACNNNNGTG	2 cut(s)	490, 528
AloI	GAACNNNNNNTCC	2 cut(s)	988, 1020
Alw21I	GWGCWC	2 cut(s)	230, 1331
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	1314
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	6 cut(s)	216, 312, 681, 1059, 1115, 1267
ApeKI	GCWGC	8 cut(s)	233, 236, 245, 254, 257, 266, 269, 359
ApoI	RAATTY	4 cut(s)	369, 598, 828, 1021
AseI	ATTAAT	2 cut(s)	951, 1317
Asp700I	GAANNNNTTC	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	808, 1267
AsuHPI	GGTGA	2 cut(s)	144, 1143
AsuII	TTCGAA	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	808
BaeGI	GKGCMC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	230, 1331
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
BccI	CCATC	5 cut(s)	84, 157, 616, 786, 1196
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	2 cut(s)	1123, 1250
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	1290
BfmI	CTRYAG	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	933
BfuI	GTATCC	2 cut(s)	1123, 1250
BglII	AGATCT	1 cut(s)	1034
BisI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
BlsI	GCNGC	9 cut(s)	235, 238, 247, 256, 259, 268, 271, 361, 1063
BmcAI	AGTACT	1 cut(s)	1357
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	808, 1267
BmrFI	CCNGG	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	858
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	875
BpuEI	CTTGAG	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	385, 1118
BsaWI	WCCGGW	1 cut(s)	1232
BsaXI	ACNNNNNCTCC	2 cut(s)	1021, 1051
Bse1I	ACTGG	3 cut(s)	295, 806, 1280
Bse3DI	GCAATG	2 cut(s)	219, 483
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	385, 1118
BseGI	GGATG	3 cut(s)	513, 627, 655
BseMI	GCAATG	2 cut(s)	219, 483
BseMII	CTCAG	2 cut(s)	264, 1131
BseNI	ACTGG	3 cut(s)	295, 806, 1280
BseRI	GAGGAG	1 cut(s)	902
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1269
BsiHKAI	GWGCWC	2 cut(s)	230, 1331
BsiSI	CCGG	1 cut(s)	1233
BslFI	GGGAC	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1269
Bsp119I	TTCGAA	1 cut(s)	875
Bsp1286I	GDGCHC	3 cut(s)	230, 418, 1331
Bsp143I	GATC	4 cut(s)	586, 1034, 1250, 1306
Bsp19I	CCATGG	1 cut(s)	1118
BspACI	CCGC	4 cut(s)	378, 385, 387, 1062
BspANI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1269
BspCNI	CTCAG	2 cut(s)	265, 1132
BspFNI	CGCG	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	933
BspPI	GGATC	1 cut(s)	1314
BspQI	GCTCTTC	1 cut(s)	5
BspT104I	TTCGAA	1 cut(s)	875
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	219, 483
BsrI	ACTGG	3 cut(s)	295, 806, 1280
BssECI	CCNNGG	2 cut(s)	385, 1118
BssMI	GATC	4 cut(s)	586, 1034, 1250, 1306
BssT1I	CCWWGG	1 cut(s)	1118
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	463, 865, 1196
Bst6I	CTCTTC	3 cut(s)	5, 74, 666
BstAFI	CTTAAG	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	200, 204, 226, 497
BstDEI	CTNAG	5 cut(s)	273, 419, 917, 1140, 1208
BstDSI	CCRYGG	2 cut(s)	385, 1118
BstEII	GGTNACC	2 cut(s)	120, 389
BstF5I	GGATG	3 cut(s)	513, 627, 655
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	589, 1037, 1253, 1309
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	586, 1034, 1250, 1306
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	2 cut(s)	120, 389
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	418
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	1034
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	1034
BsuI	GTATCC	2 cut(s)	1123, 1250
BsuRI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1269
BtgI	CCRYGG	2 cut(s)	385, 1118
BtsCI	GGATG	3 cut(s)	513, 627, 655
BtsI	GCAGTG	2 cut(s)	228, 1007
BtsIMutI	CAGTG	5 cut(s)	228, 288, 315, 1007, 1201
BveI	ACCTGC	1 cut(s)	933
Cac8I	GCNNGC	4 cut(s)	200, 204, 226, 497
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	808, 1267
Cfr42I	CCGCGG	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	1356
CspCI	CAANNNNNGTGG	4 cut(s)	626, 661, 1216, 1251
CviAII	CATG	6 cut(s)	203, 263, 1057, 1119, 1155, 1261
CviQI	GTAC	1 cut(s)	1356
DdeI	CTNAG	5 cut(s)	273, 419, 917, 1140, 1208
DpnI	GATC	4 cut(s)	588, 1036, 1252, 1308
DpnII	GATC	4 cut(s)	586, 1034, 1250, 1306
DrdI	GACNNNNNNGTC	1 cut(s)	939
DseDI	GACNNNNNNGTC	1 cut(s)	939
EaeI	YGGCCR	2 cut(s)	216, 1059
Eam1104I	CTCTTC	3 cut(s)	5, 74, 666
EarI	CTCTTC	3 cut(s)	5, 74, 666
Eco130I	CCWWGG	1 cut(s)	1118
Eco147I	AGGCCT	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	808
Eco91I	GGTNACC	2 cut(s)	120, 389
EcoO109I	RGGNCCY	1 cut(s)	1267
EcoO65I	GGTNACC	2 cut(s)	120, 389
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	1118
ErhI	CCWWGG	1 cut(s)	1118
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1264
FalI	AAGNNNNNCTT	4 cut(s)	391, 423, 900, 932
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	6 cut(s)	202, 262, 1056, 1118, 1154, 1260
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
FokI	GGATG	3 cut(s)	500, 634, 662
Fsp4HI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
FspBI	CTAG	1 cut(s)	1290
GluI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
HaeIII	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1269
HapII	CCGG	1 cut(s)	1233
Hin1II	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1264
HindIII	AAGCTT	2 cut(s)	34, 405
HinfI	GANTC	4 cut(s)	540, 626, 764, 965
HpaII	CCGG	1 cut(s)	1233
HphI	GGTGA	2 cut(s)	144, 1143
Hpy188I	TCNGA	9 cut(s)	49, 101, 210, 769, 948, 1141, 1257, 1324, 1364
Hpy188III	TCNNGA	1 cut(s)	1215
HpyCH4III	ACNGT	3 cut(s)	463, 865, 1196
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	6 cut(s)	239, 254, 398, 499, 928, 1158
HpyF3I	CTNAG	5 cut(s)	273, 419, 917, 1140, 1208
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1264
Ksp22I	TGATCA	1 cut(s)	586
KspI	CCGCGG	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	586, 1034, 1250, 1306
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	441, 1106
Lsp1109I	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
MaeI	CTAG	1 cut(s)	1290
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	120, 389, 984
MalI	GATC	4 cut(s)	588, 1036, 1252, 1308
MboI	GATC	4 cut(s)	586, 1034, 1250, 1306
MboII	GAAGA	9 cut(s)	22, 91, 96, 99, 200, 683, 801, 863, 1176
MflI	RGATCY	1 cut(s)	1034
MhlI	GDGCHC	3 cut(s)	230, 418, 1331
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	8 cut(s)	320, 369, 598, 828, 1021, 1079, 1109, 1318
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	786
Mox20I	TGGCCA	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	964
MscI	TGGCCA	1 cut(s)	218
MslI	CAYNNNNRTG	3 cut(s)	333, 490, 528
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	257, 387
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	1233
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	1118
NdeII	GATC	4 cut(s)	586, 1034, 1250, 1306
NlaIII	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1264
NspI	RCATGY	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	875
OliI	CACNNNNGTG	2 cut(s)	490, 528
PaeI	GCATGC	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	683
PciSI	GCTCTTC	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	964
PfeI	GAWTC	3 cut(s)	540, 764, 965
PkrI	GCNGC	9 cut(s)	235, 238, 247, 256, 259, 268, 271, 361, 1063
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
Ppu21I	YACGTR	1 cut(s)	526
PshBI	ATTAAT	2 cut(s)	951, 1317
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	533
PspEI	GGTNACC	2 cut(s)	120, 389
PspGI	CCWGG	1 cut(s)	533
PspPI	GGNCC	2 cut(s)	808, 1267
PstI	CTGCAG	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	1357
RsaNI	GTAC	1 cut(s)	1356
RseI	CAYNNNNRTG	3 cut(s)	333, 490, 528
SacII	CCGCGG	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	5
SatI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
Sau3AI	GATC	4 cut(s)	586, 1034, 1250, 1306
Sau96I	GGNCC	2 cut(s)	808, 1267
ScaI	AGTACT	1 cut(s)	1357
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	3 cut(s)	230, 418, 1331
SfcI	CTRYAG	1 cut(s)	237
Sfr303I	CCGCGG	1 cut(s)	388
SfuI	TTCGAA	1 cut(s)	875
SgrBI	CCGCGG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	3 cut(s)	333, 490, 528
SmlI	CTYRAG	2 cut(s)	107, 488
SmoI	CTYRAG	2 cut(s)	107, 488
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	8 cut(s)	320, 369, 598, 828, 1021, 1079, 1109, 1318
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	4 cut(s)	378, 385, 387, 1062
SspI	AATATT	1 cut(s)	737
SspMI	CTAG	1 cut(s)	1290
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	1118
TaaI	ACNGT	3 cut(s)	463, 865, 1196
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	3 cut(s)	304, 451, 875
TasI	AATT	8 cut(s)	320, 369, 598, 828, 1021, 1079, 1109, 1318
TatI	WGTACW	1 cut(s)	1355
TauI	GCSGC	1 cut(s)	1064
TfiI	GAWTC	3 cut(s)	540, 764, 965
TscAI	CASTG	5 cut(s)	235, 295, 322, 1007, 1201
TseI	GCWGC	8 cut(s)	233, 236, 245, 254, 257, 266, 269, 359
TspDTI	ATGAA	6 cut(s)	591, 969, 996, 1032, 1277, 1316
TspRI	CASTG	5 cut(s)	235, 295, 322, 1007, 1201
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	808
VspI	ATTAAT	2 cut(s)	951, 1317
XapI	RAATTY	4 cut(s)	369, 598, 828, 1021
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	964
XspI	CTAG	1 cut(s)	1290
ZrmI	AGTACT	1 cut(s)	1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.