Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010030

Physical Location & Seq

Genomic Coordinates Forward (+)

61586944 .. 61590006

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCAAAGAAGAGCTGGTTCAGTATAGTTAAAAGGTTCTTTGTTTCAGACACACAGACAAAGCAAAATAATAAGGAGAAGAGAAGAAGATGGGTTTTCGGAAGGCTTAAGATTAAAAGGTTACCCTCAATAACAGCACCAGCACCACCATCACCATTAAAGGAAAGGACACTCAATGAGGCAGAGGAAGAACAAAGCAAGCATGCTCTGAATGTGGCCATTGCGAGCACTGCTGCTGCTGAAGCTGCTGTTGCAGCTGCTCATGCTGCTGCTGAGGTCGTGTGGCTCACTGGTCTTAAAGCTCGAAATGAGGCCACTGAATTGGAACATCAATGTGAGAAGGAAACACAAGAACTTGCTGCTGTTAAAATTCAAACCGCCTTCCGCGGTTACCTTGCAAGGAAAGCTTTGAGGGCACTAAGGGGAATAGTAAAGCTCCAAGCTATTATTCGAGGACAAGCTGTGAGACGACAAGCAATGACAACACTCAAGTGCTTGCAGTCTATAATAAACATTCAATCGCACGTATGTGCCAGGAGATTCCAAACCAAAGAAGGAGATACTTATAACTATGATGAATATAATGATCAGTTCCAAAATTTGAGGGACAAGATAATAAGGATGGACTCAAACAGCCAAAGAAGGTGGGATGACAGACTTGTTTCAAAGGAAGAGGCAGAGGCCTTGTTTATGAGCAAGAAAGAGGCTATGATTAAGAGAGAAAGAATAAAGGAATATTGGTATAGCCATAGGAAATCAGCAGAATCAGAAAGAAAAAAGGTAAATGGAAGATGGAGATACTGGTTGGACCAATGGGTTGATACCCAAATTTCTAAAAGCAAAGAACTTGAAGACTTGGAAACAATTTTGGCTTCGAATAGAAAGGAGGAGTTTGGAGGTGGAAAACAAGTTAGGCTTAGAAACCTGCAAAGACAGAATAGTCATCTGATTAATGAAGGAATGGATTCTCCAAGAAAGTCATCCTTACACCACAGGAAGCAGTGTTCATTGGGAGATGAAAATTCCTTTACAAGATCTCCTATTGTTCCAACTTACATGGCCGCAACAAAATCTGCTAAATTGAAAGCGAGGTCTTTAAGCTCCCCTAAATTAAGGCCATGGAGTTTGGATACTTGCTCTGAGAGCTATTCACCATGCAAGAACAACATCTCTCTTATATCTTCCATCAACAGTGAAGTGCCACTAAGTTCCAGAAGGATTGGCAAGTCCGGTGGTATCCAGCAACGATCTCCGAGCATGAAGGGCCTTCCAAGTCCAGTAAAATCTAGCCAGACGATGAAGGATCGTAGCATTAATTCAGAGTGTTCTGTATCATATTGGGATAGACAGAGTACTTACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

454

Amino Acids

52.1

Weight (kDa)

10.01

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	120 - 138	8.8e-06	IQ calmodulin-binding motif
DUF4005	PF13178	330 - 400	5.5e-09	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13460
fragaria_vesca	FvH4_7g02140 FvH4_7g02140
malus_domestica	MD02G1297300.v1.1
prunus_persica	Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1 Prupe.2G026800_v2.0.a1
pyrus_communis	pycom02g25050
rosa_chinensis	RchiOBHm_Chr1g0319351
rosa_laevigata	RLG00000030493
rosa_roxburghii	Rroxscaffold_4G00328550
rosa_rugosa	Rorug01G0027000 Rorug01G0027100
rosa_samantha	Rh1AG039200 Rh1BG036100 Rh1CG038100 Rh1DG031800
rosa_wichuraiana	Rw1G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AasI	GACNNNNNNGTC	1 cut(s)	939
Acc36I	ACCTGC	1 cut(s)	933
AccII	CGCG	1 cut(s)	387
AciI	CCGC	4 cut(s)	378, 385, 387, 1062
AclWI	GGATC	1 cut(s)	1311
AcoI	YGGCCR	2 cut(s)	216, 1059
AcsI	RAATTY	4 cut(s)	369, 598, 828, 1021
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	1354
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	5 cut(s)	374, 518, 666, 851, 1084
AjnI	CCWGG	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AleI	CACNNNNGTG	2 cut(s)	490, 528
AloI	GAACNNNNNNTCC	2 cut(s)	988, 1020
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	1311
AoxI	GGCC	6 cut(s)	216, 312, 681, 1059, 1115, 1264
ApeKI	GCWGC	8 cut(s)	233, 236, 245, 254, 257, 266, 269, 359
ApoI	RAATTY	4 cut(s)	369, 598, 828, 1021
AseI	ATTAAT	2 cut(s)	951, 1314
Asp700I	GAANNNNTTC	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	808, 1264
AsuHPI	GGTGA	2 cut(s)	144, 1143
AsuII	TTCGAA	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	808
BaeGI	GKGCMC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
BccI	CCATC	5 cut(s)	84, 157, 616, 786, 1193
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	2 cut(s)	1123, 1247
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	1287
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	933
BfuI	GTATCC	2 cut(s)	1123, 1247
BglII	AGATCT	1 cut(s)	1034
BisI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
BlsI	GCNGC	9 cut(s)	235, 238, 247, 256, 259, 268, 271, 361, 1063
BmcAI	AGTACT	1 cut(s)	1354
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	808, 1264
BmrFI	CCNGG	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	858
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	875
BpuEI	CTTGAG	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	385, 1118
BsaWI	WCCGGW	1 cut(s)	1229
BsaXI	ACNNNNNCTCC	2 cut(s)	1021, 1051
Bse1I	ACTGG	3 cut(s)	295, 806, 1277
Bse3DI	GCAATG	2 cut(s)	219, 483
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	385, 1118
BseGI	GGATG	3 cut(s)	627, 655, 980
BseMI	GCAATG	2 cut(s)	219, 483
BseMII	CTCAG	2 cut(s)	264, 1131
BseNI	ACTGG	3 cut(s)	295, 806, 1277
BseRI	GAGGAG	1 cut(s)	902
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1266
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	1230
BslFI	GGGAC	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1266
Bsp119I	TTCGAA	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	230, 418
Bsp143I	GATC	4 cut(s)	586, 1034, 1247, 1303
Bsp19I	CCATGG	1 cut(s)	1118
BspACI	CCGC	4 cut(s)	378, 385, 387, 1062
BspANI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1266
BspCNI	CTCAG	2 cut(s)	265, 1132
BspFNI	CGCG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	933
BspPI	GGATC	1 cut(s)	1311
BspQI	GCTCTTC	1 cut(s)	5
BspT104I	TTCGAA	1 cut(s)	875
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	219, 483
BsrI	ACTGG	3 cut(s)	295, 806, 1277
BssECI	CCNNGG	2 cut(s)	385, 1118
BssMI	GATC	4 cut(s)	586, 1034, 1247, 1303
BssT1I	CCWWGG	1 cut(s)	1118
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	1 cut(s)	1193
Bst6I	CTCTTC	3 cut(s)	5, 74, 666
BstAFI	CTTAAG	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	200, 204, 226, 497
BstDEI	CTNAG	5 cut(s)	273, 419, 917, 1140, 1205
BstDSI	CCRYGG	2 cut(s)	385, 1118
BstEII	GGTNACC	2 cut(s)	120, 389
BstF5I	GGATG	3 cut(s)	627, 655, 980
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	589, 1037, 1250, 1306
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	586, 1034, 1247, 1303
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	2 cut(s)	120, 389
BstSCI	CCNGG	1 cut(s)	533
BstSLI	GKGCMC	1 cut(s)	418
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	1034
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	1034
BsuI	GTATCC	2 cut(s)	1123, 1247
BsuRI	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1266
BtgI	CCRYGG	2 cut(s)	385, 1118
BtsCI	GGATG	3 cut(s)	627, 655, 980
BtsI	GCAGTG	2 cut(s)	228, 1007
BtsIMutI	CAGTG	5 cut(s)	228, 288, 315, 1007, 1198
BveI	ACCTGC	1 cut(s)	933
Cac8I	GCNNGC	4 cut(s)	200, 204, 226, 497
Cfr13I	GGNCC	2 cut(s)	808, 1264
Cfr42I	CCGCGG	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	1353
CspCI	CAANNNNNGTGG	4 cut(s)	626, 661, 1213, 1248
CviAII	CATG	6 cut(s)	203, 263, 1057, 1119, 1155, 1258
CviQI	GTAC	1 cut(s)	1353
DdeI	CTNAG	5 cut(s)	273, 419, 917, 1140, 1205
DpnI	GATC	4 cut(s)	588, 1036, 1249, 1305
DpnII	GATC	4 cut(s)	586, 1034, 1247, 1303
DrdI	GACNNNNNNGTC	1 cut(s)	939
DseDI	GACNNNNNNGTC	1 cut(s)	939
EaeI	YGGCCR	2 cut(s)	216, 1059
Eam1104I	CTCTTC	3 cut(s)	5, 74, 666
EarI	CTCTTC	3 cut(s)	5, 74, 666
Eco130I	CCWWGG	1 cut(s)	1118
Eco147I	AGGCCT	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	261
Eco91I	GGTNACC	2 cut(s)	120, 389
EcoO109I	RGGNCCY	1 cut(s)	1264
EcoO65I	GGTNACC	2 cut(s)	120, 389
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	1118
ErhI	CCWWGG	1 cut(s)	1118
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1261
FalI	AAGNNNNNCTT	6 cut(s)	391, 423, 900, 932, 968, 1000
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	6 cut(s)	202, 262, 1056, 1118, 1154, 1257
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
FokI	GGATG	3 cut(s)	634, 662, 967
Fsp4HI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
FspBI	CTAG	1 cut(s)	1287
GluI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
HaeIII	GGCC	6 cut(s)	218, 314, 683, 1061, 1117, 1266
HapII	CCGG	1 cut(s)	1230
Hin1II	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1261
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	4 cut(s)	540, 626, 764, 965
HpaII	CCGG	1 cut(s)	1230
HphI	GGTGA	2 cut(s)	144, 1143
Hpy188I	TCNGA	8 cut(s)	49, 101, 210, 769, 948, 1141, 1254, 1321
Hpy188III	TCNNGA	1 cut(s)	1212
HpyCH4III	ACNGT	1 cut(s)	1193
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	5 cut(s)	254, 398, 499, 928, 1158
HpyF3I	CTNAG	5 cut(s)	273, 419, 917, 1140, 1205
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1261
Ksp22I	TGATCA	1 cut(s)	586
KspI	CCGCGG	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	586, 1034, 1247, 1303
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	441, 1106
Lsp1109I	GCAGC	8 cut(s)	220, 223, 232, 244, 253, 256, 266, 346
MaeI	CTAG	1 cut(s)	1287
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	2 cut(s)	120, 389
MalI	GATC	4 cut(s)	588, 1036, 1249, 1305
MboI	GATC	4 cut(s)	586, 1034, 1247, 1303
MboII	GAAGA	9 cut(s)	22, 91, 96, 99, 200, 683, 801, 863, 1173
MflI	RGATCY	1 cut(s)	1034
MhlI	GDGCHC	2 cut(s)	230, 418
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	9 cut(s)	320, 369, 598, 828, 864, 1021, 1079, 1109, 1315
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	2 cut(s)	786, 1073
Mox20I	TGGCCA	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	964
MscI	TGGCCA	1 cut(s)	218
MslI	CAYNNNNRTG	3 cut(s)	333, 490, 528
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	257, 387
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	1230
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	1118
NdeII	GATC	4 cut(s)	586, 1034, 1247, 1303
NlaIII	CATG	6 cut(s)	206, 266, 1060, 1122, 1158, 1261
NspI	RCATGY	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	875
OliI	CACNNNNGTG	2 cut(s)	490, 528
PaeI	GCATGC	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	683
PciSI	GCTCTTC	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	964
PfeI	GAWTC	3 cut(s)	540, 764, 965
PkrI	GCNGC	9 cut(s)	235, 238, 247, 256, 259, 268, 271, 361, 1063
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
Ppu21I	YACGTR	1 cut(s)	526
PshBI	ATTAAT	2 cut(s)	951, 1314
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	533
PspEI	GGTNACC	2 cut(s)	120, 389
PspGI	CCWGG	1 cut(s)	533
PspPI	GGNCC	2 cut(s)	808, 1264
PsuI	RGATCY	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	1354
RsaNI	GTAC	1 cut(s)	1353
RseI	CAYNNNNRTG	3 cut(s)	333, 490, 528
SacII	CCGCGG	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	5
SatI	GCNGC	9 cut(s)	234, 237, 246, 255, 258, 267, 270, 360, 1062
Sau3AI	GATC	4 cut(s)	586, 1034, 1247, 1303
Sau96I	GGNCC	2 cut(s)	808, 1264
ScaI	AGTACT	1 cut(s)	1354
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	2 cut(s)	230, 418
Sfr303I	CCGCGG	1 cut(s)	388
SfuI	TTCGAA	1 cut(s)	875
SgrBI	CCGCGG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	3 cut(s)	333, 490, 528
SmlI	CTYRAG	2 cut(s)	107, 488
SmoI	CTYRAG	2 cut(s)	107, 488
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	9 cut(s)	320, 369, 598, 828, 864, 1021, 1079, 1109, 1315
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	4 cut(s)	378, 385, 387, 1062
SspI	AATATT	1 cut(s)	737
SspMI	CTAG	1 cut(s)	1287
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	1118
TaaI	ACNGT	1 cut(s)	1193
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	3 cut(s)	304, 451, 875
TasI	AATT	9 cut(s)	320, 369, 598, 828, 864, 1021, 1079, 1109, 1315
TatI	WGTACW	1 cut(s)	1352
TauI	GCSGC	1 cut(s)	1064
TfiI	GAWTC	3 cut(s)	540, 764, 965
TscAI	CASTG	5 cut(s)	235, 295, 322, 1007, 1198
TseI	GCWGC	8 cut(s)	233, 236, 245, 254, 257, 266, 269, 359
TspDTI	ATGAA	6 cut(s)	591, 969, 996, 1032, 1274, 1313
TspRI	CASTG	5 cut(s)	235, 295, 322, 1007, 1198
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	808
VspI	ATTAAT	2 cut(s)	951, 1314
XapI	RAATTY	4 cut(s)	369, 598, 828, 1021
XceI	RCATGY	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	964
XspI	CTAG	1 cut(s)	1287
ZrmI	AGTACT	1 cut(s)	1354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.