Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010323

Physical Location & Seq

Genomic Coordinates Forward (+)

5464281 .. 5465702

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAATTGAAATCGAAATCTTCTTCTTCTTCTTCCTCCTCCTTGTGTGTGTTTATGCAACTCATCTTCTTCGTCCTCTTACCTTTCCTCGCATTCTCATCCTTCGCAGAAGAATCAAATCCCTCCCATTTCCAAAACATGGCCACTCTCGGCGGAGTCCACGAATCCCATGCCTCCCAGAACAGCCTCGAAACCGAAGACCTTGCTCGCTTCGCTGTCCAAGATCACAACAACAAGGAGAATGCTCTGCTTGAGTTTGTGAGGGTGGTGAAGGCAAAGGAGCAGGTGGTGGCTGGCACTCTGCACCATCTGACGATCGAGGCCATCGATGCTGGAAAGAAGAAGCTTTACGAAGCCAAAGTCTGGGTGAAGCCTTGGTTGGGTTTTAAGGAAGTACAGGAGTTCAAGCACGCCGGTGACTGTAATGAAACGCCGTCGTTTACCCCTTCTGATCTTGGTGTTAAGGAAGGTGGGCATGGTCCCGGGTGGCAATCTGTGCCGCCACACGATCCTCAGGTTCAGGATGCTGCAAATCATGCTGTTAAGAGCCTCCAGCAAAGGTCTAATTCTCTGTTTCCTTATGAGCTTCAAGAAGTTGTTCACGCAAAGGCTGAGGTGATTGAAGAACATGCCAAGTTTAACATGCTTCTGAAGTTGAAGAGGGGAGACAAAGAAGAGAAGTTTAAAGTTGAAGTGCATAAGAACAATGAAGGCACCTTCAAACTGAACCAGATGGAGGCAGATCACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

251

Amino Acids

28.01

Weight (kDa)

6.27

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12490 AT3G12490
fragaria_vesca	FvH4_7g04140
malus_domestica	MD02G1275000.v1.1 MD07G1043000.v1.1
prunus_persica	Prupe.2G046600_v2.0.a1 Prupe.2G047100_v2.0.a1
pyrus_communis	pycom02g23510
rosa_chinensis	RchiOBHm_Chr1g0328231
rosa_laevigata	RLG00000019109 RLG00000029935
rosa_multiflora	Rmu_sc0004646.1_g000040
rosa_roxburghii	Rroxscaffold_4G00321700
rosa_rugosa	Rorug01G0074400 Rorug01G0074500
rosa_samantha	Rh1AG091700 Rh1BG074000 Rh1CG088100 Rh1DG095100
rosa_wichuraiana	Rw0G011030 Rw1G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	274
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	713
AccB7I	CCANNNNNTGG	2 cut(s)	139, 363
AciI	CCGC	2 cut(s)	153, 500
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	139, 363, 380, 736
AgsI	TTSAA	7 cut(s)	10, 406, 590, 623, 658, 692, 721
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	2 cut(s)	346, 586
AluI	AGCT	2 cut(s)	346, 586
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	141, 321
ApeKI	GCWGC	1 cut(s)	527
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	2 cut(s)	483, 484
AsuHPI	GGTGA	4 cut(s)	280, 379, 428, 628
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	713
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	315, 332, 727
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	4 cut(s)	152, 185, 186, 219
BcnI	CCSGG	2 cut(s)	483, 484
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	1 cut(s)	751
BfuAI	ACCTGC	1 cut(s)	274
BisI	GCNGC	2 cut(s)	500, 528
BlsI	GCNGC	2 cut(s)	501, 529
Bme1390I	CCNGG	2 cut(s)	483, 484
Bme18I	GGWCC	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	481, 715
BmrFI	CCNGG	2 cut(s)	483, 484
BmsI	GCATC	2 cut(s)	319, 514
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	483, 484
Bsa29I	ATCGAT	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	374, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 363, 380, 736
Bse118I	RCCGGY	1 cut(s)	413
Bse21I	CCTNAGG	1 cut(s)	513
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	374, 482
BseGI	GGATG	2 cut(s)	98, 529
BseLI	CCNNNNNNNGG	4 cut(s)	139, 363, 380, 736
BseMII	CTCAG	2 cut(s)	527, 603
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	143, 323
BshNI	GGYRCC	1 cut(s)	713
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	414, 483
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	4 cut(s)	139, 363, 380, 736
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	2 cut(s)	92, 247
BsnI	GGCC	2 cut(s)	143, 323
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	223, 315, 451, 508, 742
BspACI	CCGC	2 cut(s)	153, 500
BspANI	GGCC	2 cut(s)	143, 323
BspCNI	CTCAG	2 cut(s)	526, 604
BspDI	ATCGAT	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	481, 715
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	374, 482
BssMI	GATC	5 cut(s)	223, 315, 451, 508, 742
BssT1I	CCWWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	2 cut(s)	653, 669
BstAPI	GCANNNNNTGC	2 cut(s)	496, 536
BstC8I	GCNNGC	3 cut(s)	208, 295, 411
BstDEI	CTNAG	2 cut(s)	513, 612
BstF5I	GGATG	2 cut(s)	98, 529
BstKTI	GATC	5 cut(s)	226, 318, 454, 511, 745
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	5 cut(s)	223, 315, 451, 508, 742
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 329, 496, 536
BstNSI	RCATGY	2 cut(s)	632, 646
BstSCI	CCNGG	2 cut(s)	481, 482
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	143, 323
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	98, 529
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	208, 295, 411
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	479
Cfr9I	CCCGGG	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	6 cut(s)	139, 170, 476, 536, 629, 643
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	513, 612
DpnI	GATC	5 cut(s)	225, 317, 453, 510, 744
DpnII	GATC	5 cut(s)	223, 315, 451, 508, 742
DraI	TTTAAA	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	653, 669
EarI	CTCTTC	2 cut(s)	653, 669
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	671
Eco81I	CCTNAGG	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	6 cut(s)	142, 173, 479, 539, 632, 646
FaiI	YATR	9 cut(s)	56, 140, 171, 477, 537, 582, 630, 644, 699
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	6 cut(s)	138, 169, 475, 535, 628, 642
Fnu4HI	GCNGC	2 cut(s)	500, 528
FokI	GGATG	2 cut(s)	85, 536
Fsp4HI	GCNGC	2 cut(s)	500, 528
FspBI	CTAG	1 cut(s)	751
GluI	GCNGC	2 cut(s)	500, 528
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	143, 323
HapII	CCGG	2 cut(s)	414, 483
Hin1II	CATG	6 cut(s)	142, 173, 479, 539, 632, 646
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	113, 156, 164
HpaII	CCGG	2 cut(s)	414, 483
HphI	GGTGA	4 cut(s)	280, 379, 428, 628
Hpy166II	GTNNAC	3 cut(s)	160, 441, 601
Hpy188I	TCNGA	3 cut(s)	312, 451, 651
Hpy188III	TCNNGA	2 cut(s)	521, 590
Hpy8I	GTNNAC	3 cut(s)	160, 441, 601
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	6 cut(s)	112, 265, 456, 461, 704, 727
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	4 cut(s)	58, 304, 530, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 329, 496, 536
HpyF3I	CTNAG	2 cut(s)	513, 612
Hsp92II	CATG	6 cut(s)	142, 173, 479, 539, 632, 646
Kzo9I	GATC	5 cut(s)	223, 315, 451, 508, 742
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	319, 514
MaeI	CTAG	1 cut(s)	751
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	5 cut(s)	225, 317, 453, 510, 744
MboI	GATC	5 cut(s)	223, 315, 451, 508, 742
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	5, 565
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	5 cut(s)	387, 462, 543, 639, 684
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	2 cut(s)	414, 483
MspR9I	CCNGG	2 cut(s)	483, 484
Mva1269I	GAATGC	2 cut(s)	92, 247
MwoI	GCNNNNNNNGC	4 cut(s)	212, 329, 496, 536
NciI	CCSGG	2 cut(s)	483, 484
NdeII	GATC	5 cut(s)	223, 315, 451, 508, 742
NlaIII	CATG	6 cut(s)	142, 173, 479, 539, 632, 646
NlaIV	GGNNCC	2 cut(s)	481, 715
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	2 cut(s)	632, 646
OliI	CACNNNNGTG	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	2 cut(s)	92, 247
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	113, 164
PflMI	CCANNNNNTGG	2 cut(s)	139, 363
PkrI	GCNGC	2 cut(s)	501, 529
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	481, 715
PspPI	GGNCC	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	5 cut(s)	387, 462, 543, 639, 684
SatI	GCNGC	2 cut(s)	500, 528
Sau3AI	GATC	5 cut(s)	223, 315, 451, 508, 742
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	483, 484
SfaNI	GCATC	2 cut(s)	319, 514
SgrAI	CRCCGGYG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	479
SmaI	CCCGGG	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	5, 565
SsiI	CCGC	2 cut(s)	153, 500
SspMI	CTAG	1 cut(s)	751
StyD4I	CCNGG	2 cut(s)	481, 482
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	4 cut(s)	14, 189, 318, 327
TasI	AATT	2 cut(s)	5, 565
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	2 cut(s)	113, 164
Tru1I	TTAA	5 cut(s)	387, 462, 543, 639, 684
Tru9I	TTAA	5 cut(s)	387, 462, 543, 639, 684
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	17, 441, 723
TspMI	CCCGGG	1 cut(s)	482
Van91I	CCANNNNNTGG	2 cut(s)	139, 363
VpaK11BI	GGWCC	1 cut(s)	479
XceI	RCATGY	2 cut(s)	632, 646
XmaI	CCCGGG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.