Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010323

Physical Location & Seq

Genomic Coordinates Forward (+)

46635559 .. 46638692

Gene Structure 3134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCCACCATAGCCAGCAGAATTTGCTATTCCTCTGTCGGCTCCAAGAACAGCCTCAAAACTGAAGCCCTTACCTACACTATGGACCATCTGGTAATGGAGGCCATCGATGGCGGCAAGAAAAAGCTCTATGAACCTAAGGTCTGGGTCAAGCCTTGGGTGGGATTCAAACAAGTCCAGGAATTCAAGCACGCTGAGGACTCCGAAACTGTATCTGAAACCCCTCGTGGGCATGCTCTAGGGTGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCCGTAAACGTTGTTGTGAAGAGCATTAAGCAAAAGTCCAATTCATTGTTCCTTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCGGAGAGCGAGTTGATGTGGAGATCTACAAGGCACTCTACATCACCTCGCCACGATGTTGTCATCAATGAGTTCGAGTTGCTACTGGAGACAATAGCTGTAGGGGACAAGAAATGGCCAAGTCAAAGAATGCTCACAACCAGTCCCTACGCGGTGAATGAAGCAGATATGCGCAGGGTGAAACTAAGGAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

188

Amino Acids

21.42

Weight (kDa)

7.86

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12490 AT3G12490
fragaria_vesca	FvH4_7g04140
malus_domestica	MD02G1275000.v1.1 MD07G1043000.v1.1
prunus_persica	Prupe.2G046600_v2.0.a1 Prupe.2G047100_v2.0.a1
pyrus_communis	pycom02g23510
rosa_chinensis	RchiOBHm_Chr1g0328231
rosa_laevigata	RLG00000019109 RLG00000029935
rosa_multiflora	Rmu_sc0004646.1_g000040
rosa_roxburghii	Rroxscaffold_4G00321700
rosa_rugosa	Rorug01G0074400 Rorug01G0074500
rosa_samantha	Rh1AG091700 Rh1BG074000 Rh1CG088100 Rh1DG095100
rosa_wichuraiana	Rw0G011030 Rw1G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	539
AccII	CGCG	1 cut(s)	518
AciI	CCGC	3 cut(s)	114, 368, 518
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	2 cut(s)	3, 482
AcsI	RAATTY	2 cut(s)	21, 182
AcuI	CTGAAG	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	161, 228, 364
AgsI	TTSAA	4 cut(s)	169, 187, 278, 347
AjnI	CCWGG	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	3 cut(s)	127, 343, 464
AluI	AGCT	3 cut(s)	127, 343, 464
Alw26I	GTCTC	2 cut(s)	449, 552
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	3 cut(s)	3, 102, 482
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	21, 182
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	3 cut(s)	402, 532, 556
AvaII	GGWCC	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	138
BalI	TGGCCA	2 cut(s)	5, 484
BauI	CACGAG	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	96, 104, 113
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	449, 552
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	465
BglII	AGATCT	1 cut(s)	389
BisI	GCNGC	2 cut(s)	115, 257
BlsI	GCNGC	2 cut(s)	116, 258
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	2 cut(s)	195, 363
BpuEI	CTTGAG	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 228, 364
Bse1I	ACTGG	2 cut(s)	456, 507
Bse21I	CCTNAGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	3 cut(s)	161, 228, 364
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	456, 507
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	518
BshFI	GGCC	3 cut(s)	5, 104, 484
BshVI	ATCGAT	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	485, 495
BslI	CCNNNNNNNGG	3 cut(s)	161, 228, 364
BsmAI	GTCTC	2 cut(s)	449, 552
BsmFI	GGGAC	2 cut(s)	485, 495
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	3 cut(s)	5, 104, 484
Bsp143I	GATC	2 cut(s)	265, 389
BspACI	CCGC	3 cut(s)	114, 368, 518
BspANI	GGCC	3 cut(s)	5, 104, 484
BspCNI	CTCAG	1 cut(s)	187
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	518
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	456, 507
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	265, 389
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	296
BstAPI	GCANNNNNTGC	2 cut(s)	24, 253
BstC8I	GCNNGC	3 cut(s)	16, 192, 234
BstDEI	CTNAG	4 cut(s)	138, 195, 363, 551
BstFNI	CGCG	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	2 cut(s)	268, 392
BstMAI	GTCTC	2 cut(s)	449, 552
BstMBI	GATC	2 cut(s)	265, 389
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 24, 253
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
Bsu15I	ATCGAT	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	5, 104, 484
BsuTUI	ATCGAT	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	16, 192, 234
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	108
CviAII	CATG	3 cut(s)	233, 263, 359
DdeI	CTNAG	4 cut(s)	138, 195, 363, 551
DpnI	GATC	2 cut(s)	267, 391
DpnII	GATC	2 cut(s)	265, 389
EaeI	YGGCCR	2 cut(s)	3, 482
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	84
Eco81I	CCTNAGG	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	3 cut(s)	236, 266, 362
FaiI	YATR	8 cut(s)	11, 83, 132, 234, 264, 339, 360, 536
FaqI	GGGAC	2 cut(s)	485, 495
FatI	CATG	3 cut(s)	232, 262, 358
Fnu4HI	GCNGC	2 cut(s)	115, 257
Fsp4HI	GCNGC	2 cut(s)	115, 257
FspBI	CTAG	1 cut(s)	239
FspI	TGCGCA	1 cut(s)	539
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	2 cut(s)	115, 257
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	3 cut(s)	5, 104, 484
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	3 cut(s)	236, 266, 362
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	165, 200
HphI	GGTGA	3 cut(s)	402, 532, 556
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	205, 217
Hpy188III	TCNNGA	3 cut(s)	263, 278, 347
Hpy8I	GTNNAC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 24, 253
HpyF3I	CTNAG	4 cut(s)	138, 195, 363, 551
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	236, 266, 362
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	265, 389
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	28, 77, 130, 164, 191, 437, 520, 526
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	291
MalI	GATC	2 cut(s)	267, 391
MboI	GATC	2 cut(s)	265, 389
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	389
MlsI	TGGCCA	2 cut(s)	5, 484
MluCI	AATT	3 cut(s)	21, 182, 322
MluNI	TGGCCA	2 cut(s)	5, 484
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	8 cut(s)	43, 65, 94, 190, 234, 270, 279, 423
Mox20I	TGGCCA	2 cut(s)	5, 484
MscI	TGGCCA	2 cut(s)	5, 484
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	2 cut(s)	5, 484
MspR9I	CCNGG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	11, 24, 253
NdeII	GATC	2 cut(s)	265, 389
NlaIII	CATG	3 cut(s)	236, 266, 362
NlaIV	GGNNCC	1 cut(s)	43
NsbI	TGCGCA	1 cut(s)	539
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PagI	TCATGA	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	296
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	165
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	116, 258
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	115, 257
Sau3AI	GATC	2 cut(s)	265, 389
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	8 cut(s)	77, 129, 139, 144, 294, 345, 415, 466
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	3 cut(s)	21, 182, 322
SsiI	CCGC	3 cut(s)	114, 368, 518
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	108, 441
TasI	AATT	3 cut(s)	21, 182, 322
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	147, 315, 540
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	21, 182
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.