Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010323

Physical Location & Seq

Genomic Coordinates Reverse (-)

12065901 .. 12066552

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0074500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTGCACCCCATGTAGCTGGGGTGCCAGCTTTGCTAAAAGCTACCACCATAGAAGACCAATCAAATGGTCTTCCAGCCACACCTTTAGATTTTGGGGCAGGCCACATCAACCCAAATAAAGCTATGAACCCTGGACTAGTCTATGACATGAATATGCAAGATTATATCCAGTATCTATGTAGCCTTGGATACAACGAGGATCAAATTGGAACGAGAATTGCAGTAGAGCCTACAACTCTAACATTCGCCAAAAAGCATCAGCAGCAGTGTTTTGTCTTGAGCATAGAGGTCGACAGTGATGCTCCGAAGGTGATCTATGGGTACCTAAGATGGGTTAATGATCAAGGTAAGCACATAGTATCAAGTCCTGTAGTGGTCATCAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

130

Amino Acids

14.23

Weight (kDa)

5.69

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	71 - 127	9.7e-11	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12490 AT3G12490
fragaria_vesca	FvH4_7g04140
malus_domestica	MD02G1275000.v1.1 MD07G1043000.v1.1
prunus_persica	Prupe.2G046600_v2.0.a1 Prupe.2G047100_v2.0.a1
pyrus_communis	pycom02g23510
rosa_chinensis	RchiOBHm_Chr1g0328231
rosa_laevigata	RLG00000019109 RLG00000029935
rosa_multiflora	Rmu_sc0004646.1_g000040
rosa_roxburghii	Rroxscaffold_4G00321700
rosa_rugosa	Rorug01G0074400 Rorug01G0074500
rosa_samantha	Rh1AG091700 Rh1BG074000 Rh1CG088100 Rh1DG095100
rosa_wichuraiana	Rw0G011030 Rw1G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	2 cut(s)	25, 324
AccI	GTMKAC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	334
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	4 cut(s)	20, 32, 44, 125
AluI	AGCT	4 cut(s)	20, 32, 44, 125
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	5, 265
Asp718I	GGTACC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	325
BanI	GGYRCC	2 cut(s)	25, 324
BbsI	GAAGAC	2 cut(s)	63, 65
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	327
BcgI	CGANNNNNNTGC	4 cut(s)	274, 284, 308, 318
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	343
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	6, 266
BlsI	GCNGC	2 cut(s)	7, 267
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	27, 326
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	268, 292
BpiI	GAAGAC	2 cut(s)	63, 65
BpuEI	CTTGAG	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	133, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	133, 187
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	2 cut(s)	25, 324
BslI	CCNNNNNNNGG	1 cut(s)	334
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	202, 315, 343
BspANI	GGCC	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	27, 326
BspPI	GGATC	1 cut(s)	210
BspT107I	GGYRCC	2 cut(s)	25, 324
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	133, 187
BssMI	GATC	3 cut(s)	202, 315, 343
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	30, 103
BstDEI	CTNAG	1 cut(s)	329
BstKTI	GATC	3 cut(s)	205, 318, 346
BstMBI	GATC	3 cut(s)	202, 315, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 265
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	63, 65
BstXI	CCANNNNNNTGG	2 cut(s)	20, 68
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	275, 304
Cac8I	GCNNGC	2 cut(s)	30, 103
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	14, 151
CviJI	RGCY	9 cut(s)	5, 20, 32, 44, 80, 105, 125, 186, 232
CviKI_1	RGCY	9 cut(s)	5, 20, 32, 44, 80, 105, 125, 186, 232
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	204, 317, 345
DpnII	GATC	3 cut(s)	202, 315, 343
Eco130I	CCWWGG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	17, 154
FatI	CATG	2 cut(s)	13, 150
FbaI	TGATCA	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	6, 266
Fsp4HI	GCNGC	2 cut(s)	6, 266
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	6, 266
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	17, 154
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	8, 160, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 265
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	17, 154
KpnI	GGTACC	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	202, 315, 343
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	8 cut(s)	6, 42, 87, 90, 120, 147, 185, 384
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	268, 292
MaeI	CTAG	1 cut(s)	140
MalI	GATC	3 cut(s)	204, 317, 345
MboI	GATC	3 cut(s)	202, 315, 343
MboII	GAAGA	2 cut(s)	65, 68
MluCI	AATT	2 cut(s)	207, 219
MnlI	CCTC	2 cut(s)	193, 283
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	34, 265
NdeII	GATC	3 cut(s)	202, 315, 343
NlaIII	CATG	2 cut(s)	17, 154
NlaIV	GGNNCC	2 cut(s)	27, 326
PkrI	GCNGC	2 cut(s)	7, 267
Psp6I	CCWGG	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	27, 326
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	155
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	6, 266
Sau3AI	GATC	3 cut(s)	202, 315, 343
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	9 cut(s)	22, 34, 46, 88, 127, 294, 315, 330, 352
SfaNI	GCATC	2 cut(s)	268, 292
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	2 cut(s)	207, 219
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	207, 219
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	275, 304
TseI	GCWGC	2 cut(s)	5, 265
TspDTI	ATGAA	2 cut(s)	143, 167
TspRI	CASTG	2 cut(s)	275, 304
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.