Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010323

Physical Location & Seq

Genomic Coordinates Reverse (-)

51626679 .. 51628034

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCACCCTCGGCGGAATTCGCGACTCCCCTGCCGGCTCCGAGAACAGCCTCGAGACCGAATCCCTCGCCCGCTTTGCCGTCGACGAGCATAACAAGAAGGAGAATGCTGTGCTGGAGTTTGTTCGAGTGGTGAAGGCAAAGGAACAGGTGGTTGCCGGCACTCTGCACCATCTGGTTGTCGAGGCCATCGACGGCGGAAAGAAGAAGCTTTATGAAGCCAAGGTCTGGGTCAAGCCTTGGTTGGGATTTAAAGAGGTTCAGGAATTCAAGCACGCTGAGGATCCCGAAGCTGCATCTGAAACGCCGTCGTTTACTGCTTCCGATTTGGGCGTTAAGCAAGGTGGGCATGCTCCAGGGTGGCAAGATGTGCATCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAGGTCCAATTCGTTGTTCCCTTATGAGCTTCAAGAGGTCGTCCATGCTAAGGCAGAGGTGATAGAAGATCATGCCAAGTTCAACATGCTTCTTAAGCTGAAGAGGGGAGACAAGGAAGAGAAATATAGAGTTGAAGTGCACAAGAACAATGAAGGTGCCTACAATCTAAATCAGATGGAGGCACAGCACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

209

Amino Acids

23.25

Weight (kDa)

5.95

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	15 - 92	1.2e-15	Cystatin domain
SQAPI	PF16845	21 - 92	4.5e-20	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12490 AT3G12490
fragaria_vesca	FvH4_7g04140
malus_domestica	MD02G1275000.v1.1 MD07G1043000.v1.1
prunus_persica	Prupe.2G046600_v2.0.a1 Prupe.2G047100_v2.0.a1
pyrus_communis	pycom02g23510
rosa_chinensis	RchiOBHm_Chr1g0328231
rosa_laevigata	RLG00000019109 RLG00000029935
rosa_multiflora	Rmu_sc0004646.1_g000040
rosa_roxburghii	Rroxscaffold_4G00321700
rosa_rugosa	Rorug01G0074400 Rorug01G0074500
rosa_samantha	Rh1AG091700 Rh1BG074000 Rh1CG088100 Rh1DG095100
rosa_wichuraiana	Rw0G011030 Rw1G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	15, 73, 198
AclWI	GGATC	3 cut(s)	278, 291, 377
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	18, 266
AcuI	CTGAAG	2 cut(s)	410, 551
AfiI	CCNNNNNNNGG	3 cut(s)	228, 245, 481
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	271, 395, 464, 514, 566
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	4 cut(s)	211, 293, 460, 529
AluI	AGCT	4 cut(s)	211, 293, 460, 529
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	50, 534
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	278, 291, 377
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	3, 186
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	293, 401
ApoI	RAATTY	2 cut(s)	18, 266
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	145, 502
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	573
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	280, 413
BccI	CCATC	3 cut(s)	180, 197, 601
BceAI	ACGGC	3 cut(s)	65, 211, 292
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	50, 534
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	2 cut(s)	294, 402
BlsI	GCNGC	2 cut(s)	295, 403
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	3 cut(s)	40, 285, 589
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	3 cut(s)	305, 382, 388
BpmI	CTGGAG	2 cut(s)	137, 339
Bpu10I	CCTNAGC	2 cut(s)	279, 480
BpuEI	CTTGAG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	4 cut(s)	10, 222, 239, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 245, 481
Bse118I	RCCGGY	2 cut(s)	35, 158
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	4 cut(s)	10, 222, 239, 356
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	3 cut(s)	228, 245, 481
BseMII	CTCAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	2 cut(s)	280, 413
BsgI	GTGCAG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	5, 188
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	36, 159
BslI	CCNNNNNNNGG	3 cut(s)	228, 245, 481
BsmAI	GTCTC	2 cut(s)	50, 534
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 188
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	283, 382, 499
Bsp68I	TCGCGA	1 cut(s)	24
BspACI	CCGC	3 cut(s)	15, 73, 198
BspANI	GGCC	2 cut(s)	5, 188
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	40, 285, 589
BspPI	GGATC	3 cut(s)	278, 291, 377
BspQI	GCTCTTC	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	2 cut(s)	35, 158
BssAI	RCCGGY	2 cut(s)	35, 158
BssECI	CCNNGG	4 cut(s)	10, 222, 239, 356
BssMI	GATC	3 cut(s)	283, 382, 499
BssT1I	CCWWGG	2 cut(s)	222, 239
Bst2UI	CCWGG	1 cut(s)	357
Bst6I	CTCTTC	3 cut(s)	413, 527, 543
BstAFI	CTTAAG	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstC8I	GCNNGC	5 cut(s)	37, 73, 160, 276, 351
BstDEI	CTNAG	2 cut(s)	279, 480
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	286, 385, 502
BstMAI	GTCTC	2 cut(s)	50, 534
BstMBI	GATC	3 cut(s)	283, 382, 499
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 77, 346, 370, 410, 526
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	353, 520
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	573
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	280, 413
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	5, 188
BtsCI	GGATG	1 cut(s)	373
BtuMI	TCGCGA	1 cut(s)	24
Cac8I	GCNNGC	5 cut(s)	37, 73, 160, 276, 351
CciI	TCATGA	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	35, 158
Cfr13I	GGNCC	1 cut(s)	435
CviAII	CATG	6 cut(s)	350, 380, 410, 476, 503, 517
DdeI	CTNAG	2 cut(s)	279, 480
DpnI	GATC	3 cut(s)	285, 384, 501
DpnII	GATC	3 cut(s)	283, 382, 499
DraI	TTTAAA	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	413, 527, 543
EarI	CTCTTC	3 cut(s)	413, 527, 543
EciI	GGCGGA	2 cut(s)	30, 213
Eco130I	CCWWGG	2 cut(s)	222, 239
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	410, 551
Eco88I	CYCGRG	1 cut(s)	53
EcoRI	GAATTC	2 cut(s)	18, 266
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	222, 239
ErhI	CCWWGG	2 cut(s)	222, 239
FaeI	CATG	6 cut(s)	353, 383, 413, 479, 506, 520
FatI	CATG	6 cut(s)	349, 379, 409, 475, 502, 516
FauI	CCCGC	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	294, 402
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	294, 402
GluI	GCNGC	2 cut(s)	294, 402
GsuI	CTGGAG	2 cut(s)	137, 339
HaeIII	GGCC	2 cut(s)	5, 188
HapII	CCGG	2 cut(s)	36, 159
Hin1II	CATG	6 cut(s)	353, 383, 413, 479, 506, 520
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	26, 62
HpaII	CCGG	2 cut(s)	36, 159
HphI	GGTGA	2 cut(s)	145, 502
Hpy166II	GTNNAC	3 cut(s)	85, 315, 571
Hpy188I	TCNGA	4 cut(s)	43, 301, 325, 606
Hpy188III	TCNNGA	7 cut(s)	23, 55, 263, 287, 380, 395, 464
Hpy8I	GTNNAC	3 cut(s)	85, 315, 571
Hpy99I	CGWCG	4 cut(s)	86, 89, 197, 313
HpyAV	CCTTC	4 cut(s)	94, 130, 434, 578
HpyCH4V	TGCA	5 cut(s)	169, 296, 373, 401, 571
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 77, 346, 370, 410, 526
HpyF3I	CTNAG	2 cut(s)	279, 480
Hsp92II	CATG	6 cut(s)	353, 383, 413, 479, 506, 520
KroI	GCCGGC	2 cut(s)	35, 158
KroNI	GCCGGC	2 cut(s)	37, 160
Kzo9I	GATC	3 cut(s)	283, 382, 499
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	44, 358
Lsp1109I	GCAGC	2 cut(s)	280, 413
LweI	GCATC	3 cut(s)	305, 382, 388
MalI	GATC	3 cut(s)	285, 384, 501
MboI	GATC	3 cut(s)	283, 382, 499
MboII	GAAGA	5 cut(s)	217, 430, 509, 544, 560
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	18, 266, 439
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	20
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	35, 158
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	252, 336, 525, 625
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	2 cut(s)	36, 159
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	6 cut(s)	21, 77, 346, 370, 410, 526
NaeI	GCCGGC	2 cut(s)	37, 160
NdeII	GATC	3 cut(s)	283, 382, 499
NgoMIV	GCCGGC	2 cut(s)	35, 158
NlaIII	CATG	6 cut(s)	353, 383, 413, 479, 506, 520
NlaIV	GGNNCC	3 cut(s)	40, 285, 589
NruI	TCGCGA	1 cut(s)	24
NspI	RCATGY	2 cut(s)	353, 520
PaeI	GCATGC	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	112
PdiI	GCCGGC	2 cut(s)	37, 160
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	295, 403
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	40, 285, 589
PspPI	GGNCC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	283
RruI	TCGCGA	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	378
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	4 cut(s)	252, 336, 525, 625
SatI	GCNGC	2 cut(s)	294, 402
Sau3AI	GATC	3 cut(s)	283, 382, 499
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	3 cut(s)	305, 382, 388
Sfr274I	CTCGAG	1 cut(s)	53
SgrDI	CGTCGACG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	435
SlaI	CTCGAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	3 cut(s)	53, 387, 524
SmoI	CTYRAG	3 cut(s)	53, 387, 524
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	3 cut(s)	18, 266, 439
SsiI	CCGC	3 cut(s)	15, 73, 198
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	222, 239
TaqI	TCGA	5 cut(s)	54, 84, 127, 183, 192
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	18, 266, 439
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	252, 336, 525, 625
Tru9I	TTAA	4 cut(s)	252, 336, 525, 625
TseI	GCWGC	2 cut(s)	293, 401
TspDTI	ATGAA	2 cut(s)	231, 597
Van91I	CCANNNNNTGG	1 cut(s)	228
Vha464I	CTTAAG	1 cut(s)	524
VneI	GTGCAC	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	435
XapI	RAATTY	2 cut(s)	18, 266
XceI	RCATGY	2 cut(s)	353, 520
XhoI	CTCGAG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.