Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010323

Physical Location & Seq

Genomic Coordinates Reverse (-)

21593862 .. 21595493

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAATCGGAATCTTATCTCTCACTATTAATCGCTTCCTTCTTCTTCCTCCTCCTCCTCGCATTCTCGTCCACCGCCGAAGAATCATCAACCCGAATCGGCTGCGGCCACACCTCCCACCGCAACATGGCCACACTCGGCGGAGTCCACGAATCCCACGGCGCCCAAAACAGCGCCGAAGTTGAAGACCTCGCTCGCTTCGCAGTCCAAGAACACAACAAGAAGGAGAATGCTCTGCTCGAATTTGTGAGGGTTGTGAAGGCGAAAGAACAGGTGGTTGCCGGAACTCTGCACCATCTGACGATCGAGGCGATCGAGGCCGGCAAGAAGAAGCTGTACCAAGCAAAGGTGTGGGTGAAGCCTTGGATGGGCTTCAAGGAAGTGCAGGAGTTCAAGCACGCTGATGAGGAGGAAACGCCGTCGGTTACCTCTTCCGATCTTGGCGTCAAGCAAGGCGGTCATCCTCCTGGGTGGCAATCTGTGCCGCCGCATGACCCGCAGGTGCAGGATGCGGCTAACCATGCTGTTAAGTCCCTCCAGCAGAAGTCTAATTCCTTGTTGCCTTATGAGCTTCAAGAAGTTGTTCACGCTCAGGCTGAGGTGGCAGAGGAGCATGCAAAGTTTAACATGCTTCTGAAGGTGAAGAGGGGAAGCAAAGAAGAGAAGTTTAAAGCCGAAGTGCATAAGAATATGGAAGGCACCTTCAGTCTGAATCAGATGGAGGCAGATCACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

246

Amino Acids

27.27

Weight (kDa)

6.2

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12490 AT3G12490
fragaria_vesca	FvH4_7g04140
malus_domestica	MD02G1275000.v1.1 MD07G1043000.v1.1
prunus_persica	Prupe.2G046600_v2.0.a1 Prupe.2G047100_v2.0.a1
pyrus_communis	pycom02g23510
rosa_chinensis	RchiOBHm_Chr1g0328231
rosa_laevigata	RLG00000019109 RLG00000029935
rosa_multiflora	Rmu_sc0004646.1_g000040
rosa_roxburghii	Rroxscaffold_4G00321700
rosa_rugosa	Rorug01G0074400 Rorug01G0074500
rosa_samantha	Rh1AG091700 Rh1BG074000 Rh1CG088100 Rh1DG095100
rosa_wichuraiana	Rw0G011030 Rw1G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
AccB1I	GGYRCC	2 cut(s)	161, 698
AciI	CCGC	9 cut(s)	75, 105, 121, 141, 456, 485, 488, 497, 512
AcoI	YGGCCR	2 cut(s)	106, 129
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	656, 688
AcyI	GRCGYC	2 cut(s)	162, 444
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	127, 346, 368
AgsI	TTSAA	4 cut(s)	185, 376, 394, 575
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	2 cut(s)	334, 571
AluI	AGCT	2 cut(s)	334, 571
AoxI	GGCC	3 cut(s)	106, 129, 318
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	164, 176
AsuHPI	GGTGA	2 cut(s)	367, 652
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	161, 698
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbsI	GAAGAC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	3 cut(s)	303, 361, 712
BceAI	ACGGC	2 cut(s)	175, 403
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	1 cut(s)	468
BfoI	RGCGCY	2 cut(s)	165, 177
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	5 cut(s)	103, 106, 485, 488, 513
BlsI	GCNGC	5 cut(s)	104, 107, 486, 489, 514
Bme1390I	CCNGG	1 cut(s)	468
BmiI	GGNNCC	2 cut(s)	163, 700
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	521
Bpu10I	CCTNAGC	2 cut(s)	591, 597
BsaHI	GRCGYC	2 cut(s)	162, 444
BsaJI	CCNNGG	3 cut(s)	157, 362, 467
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 346, 368
Bse118I	RCCGGY	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	157, 362, 467
BseGI	GGATG	3 cut(s)	372, 460, 514
BseLI	CCNNNNNNNGG	3 cut(s)	127, 346, 368
BseMII	CTCAG	2 cut(s)	588, 605
BseRI	GAGGAG	5 cut(s)	41, 44, 47, 422, 623
BseXI	GCAGC	1 cut(s)	89
BsgI	GTGCAG	3 cut(s)	275, 404, 524
Bsh1285I	CGRYCG	2 cut(s)	306, 315
BshFI	GGCC	3 cut(s)	108, 131, 320
BshNI	GGYRCC	2 cut(s)	161, 698
BsiEI	CGRYCG	2 cut(s)	306, 315
BsiSI	CCGG	2 cut(s)	282, 321
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	3 cut(s)	127, 346, 368
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	2 cut(s)	62, 235
BsnI	GGCC	3 cut(s)	108, 131, 320
Bsp143I	GATC	4 cut(s)	303, 312, 436, 727
BspACI	CCGC	9 cut(s)	75, 105, 121, 141, 456, 485, 488, 497, 512
BspANI	GGCC	3 cut(s)	108, 131, 320
BspCNI	CTCAG	2 cut(s)	589, 604
BspLI	GGNNCC	2 cut(s)	163, 700
BspMI	ACCTGC	1 cut(s)	490
BspT107I	GGYRCC	2 cut(s)	161, 698
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	157, 362, 467
BssMI	GATC	4 cut(s)	303, 312, 436, 727
BssNI	GRCGYC	2 cut(s)	162, 444
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	468
Bst6I	CTCTTC	3 cut(s)	436, 638, 654
BstACI	GRCGYC	2 cut(s)	162, 444
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstC8I	GCNNGC	4 cut(s)	196, 322, 399, 615
BstDEI	CTNAG	2 cut(s)	591, 597
BstDSI	CCRYGG	1 cut(s)	157
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	3 cut(s)	372, 460, 514
BstH2I	RGCGCY	2 cut(s)	165, 177
BstHHI	GCGC	2 cut(s)	164, 176
BstKTI	GATC	4 cut(s)	306, 315, 439, 730
BstMBI	GATC	4 cut(s)	303, 312, 436, 727
BstMCI	CGRYCG	2 cut(s)	306, 315
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 317, 481, 496, 521, 568, 602
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	2 cut(s)	617, 631
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	108, 131, 320
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	372, 460, 514
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	4 cut(s)	196, 322, 399, 615
CfoI	GCGC	2 cut(s)	164, 176
Cfr10I	RCCGGY	1 cut(s)	320
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	5 cut(s)	127, 491, 521, 614, 628
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	591, 597
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	4 cut(s)	305, 314, 438, 729
DpnII	GATC	4 cut(s)	303, 312, 436, 727
DraI	TTTAAA	1 cut(s)	670
EaeI	YGGCCR	2 cut(s)	106, 129
Eam1104I	CTCTTC	3 cut(s)	436, 638, 654
EarI	CTCTTC	3 cut(s)	436, 638, 654
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	656, 688
Eco91I	GGTNACC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	362
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	5 cut(s)	130, 494, 524, 617, 631
FaiI	YATR	8 cut(s)	128, 492, 522, 567, 615, 629, 684, 692
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	5 cut(s)	126, 490, 520, 613, 627
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	5 cut(s)	103, 106, 485, 488, 513
FokI	GGATG	3 cut(s)	379, 447, 521
Fsp4HI	GCNGC	5 cut(s)	103, 106, 485, 488, 513
GlaI	GCGC	2 cut(s)	163, 175
GluI	GCNGC	5 cut(s)	103, 106, 485, 488, 513
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	2 cut(s)	165, 177
HaeIII	GGCC	3 cut(s)	108, 131, 320
HapII	CCGG	2 cut(s)	282, 321
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	2 cut(s)	164, 176
Hin1I	GRCGYC	2 cut(s)	162, 444
Hin1II	CATG	5 cut(s)	130, 494, 524, 617, 631
Hin6I	GCGC	2 cut(s)	162, 174
HinP1I	GCGC	2 cut(s)	162, 174
HinfI	GANTC	6 cut(s)	11, 83, 96, 144, 152, 712
HpaII	CCGG	2 cut(s)	282, 321
HphI	GGTGA	2 cut(s)	367, 652
Hpy166II	GTNNAC	3 cut(s)	72, 148, 586
Hpy188I	TCNGA	6 cut(s)	10, 300, 436, 636, 711, 717
Hpy188III	TCNNGA	1 cut(s)	575
Hpy8I	GTNNAC	3 cut(s)	72, 148, 586
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	6 cut(s)	49, 217, 253, 631, 689, 712
HpyCH4V	TGCA	5 cut(s)	292, 385, 505, 617, 682
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 317, 481, 496, 521, 568, 602
HpyF3I	CTNAG	2 cut(s)	591, 597
Hsp92I	GRCGYC	2 cut(s)	162, 444
Hsp92II	CATG	5 cut(s)	130, 494, 524, 617, 631
HspAI	GCGC	2 cut(s)	162, 174
KasI	GGCGCC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	303, 312, 436, 727
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	499
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	4 cut(s)	305, 314, 438, 729
MboI	GATC	4 cut(s)	303, 312, 436, 727
MboII	GAAGA	8 cut(s)	34, 37, 92, 197, 340, 423, 655, 671
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	242, 550
MluNI	TGGCCA	1 cut(s)	131
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	4 cut(s)	29, 528, 624, 669
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	2 cut(s)	282, 321
MspR9I	CCNGG	1 cut(s)	468
Mva1269I	GAATGC	2 cut(s)	62, 235
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	7 cut(s)	200, 317, 481, 496, 521, 568, 602
NaeI	GCCGGC	1 cut(s)	322
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	4 cut(s)	303, 312, 436, 727
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	5 cut(s)	130, 494, 524, 617, 631
NlaIV	GGNNCC	2 cut(s)	163, 700
NmeAIII	GCCGAG	1 cut(s)	117
NspI	RCATGY	2 cut(s)	617, 631
PaeI	GCATGC	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	2 cut(s)	308, 312
PctI	GAATGC	2 cut(s)	62, 235
PdiI	GCCGGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	5 cut(s)	11, 83, 96, 152, 712
PkrI	GCNGC	5 cut(s)	104, 107, 486, 489, 514
Ple19I	CGATCG	2 cut(s)	306, 315
PleI	GAGTC	1 cut(s)	152
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	163, 700
PvuI	CGATCG	2 cut(s)	306, 315
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	29, 528, 624, 669
SatI	GCNGC	5 cut(s)	103, 106, 485, 488, 513
Sau3AI	GATC	4 cut(s)	303, 312, 436, 727
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	499
SfoI	GGCGCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	402
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	2 cut(s)	242, 550
SsiI	CCGC	9 cut(s)	75, 105, 121, 141, 456, 485, 488, 497, 512
SspDI	GGCGCC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	362
TaqI	TCGA	3 cut(s)	240, 306, 315
TasI	AATT	2 cut(s)	242, 550
TauI	GCSGC	4 cut(s)	108, 487, 490, 515
TfiI	GAWTC	5 cut(s)	11, 83, 96, 152, 712
Tru1I	TTAA	4 cut(s)	29, 528, 624, 669
Tru9I	TTAA	4 cut(s)	29, 528, 624, 669
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	29
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	2 cut(s)	617, 631
XmnI	GAANNNNTTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.