ubiquitin protein ligase activity
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g05930 FvH4_7g05930 FvH4_7g05930 |
| malus_domestica | MD07G1068200.v1.1 |
| prunus_persica | Prupe.2G085600_v2.0.a1 |
| pyrus_communis | pycom07g05230 |
| rosa_chinensis | RchiOBHm_Chr1g0333131 |
| rosa_laevigata | RLG00000029624 |
| rosa_multiflora | Rmu_sc0007432.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00317770 |
| rosa_rugosa | Rorug01G0107300 Rorug01G0107400 |
| rosa_samantha | Rh1AG130600 Rh1BG099700 Rh1CG124400 Rh1DG135900 |
| rosa_wichuraiana | Rw1G010240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 776 |
| AccB1I | GGYRCC | 1 cut(s) | 776 |
| AccI | GTMKAC | 3 cut(s) | 352, 797, 1920 |
| AccII | CGCG | 3 cut(s) | 442, 1371, 2592 |
| AciI | CCGC | 6 cut(s) | 442, 1369, 1475, 1595, 1747, 2590 |
| AclWI | GGATC | 2 cut(s) | 1260, 1898 |
| AcoI | YGGCCR | 3 cut(s) | 1472, 2374, 2587 |
| AcsI | RAATTY | 4 cut(s) | 222, 283, 1895, 2513 |
| AcuI | CTGAAG | 6 cut(s) | 192, 363, 1103, 1566, 1569, 2592 |
| AdeI | CACNNNGTG | 1 cut(s) | 2650 |
| AfaI | GTAC | 6 cut(s) | 778, 907, 1327, 1345, 2143, 2828 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 457, 573, 875, 1063, 1481, 2724 |
| AflII | CTTAAG | 1 cut(s) | 2776 |
| AflIII | ACRYGT | 3 cut(s) | 412, 1761, 1985 |
| AgeI | ACCGGT | 1 cut(s) | 1541 |
| AhlI | ACTAGT | 1 cut(s) | 1805 |
| AjnI | CCWGG | 4 cut(s) | 294, 605, 874, 1451 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2711, 2743 |
| Alw21I | GWGCWC | 1 cut(s) | 2539 |
| Alw26I | GTCTC | 5 cut(s) | 798, 824, 1776, 2498, 2540 |
| AlwI | GGATC | 2 cut(s) | 1260, 1898 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 386, 702 |
| AoxI | GGCC | 9 cut(s) | 150, 955, 1472, 1842, 2084, 2215, 2374, 2403, 2587 |
| ApeKI | GCWGC | 7 cut(s) | 628, 635, 818, 1820, 1961, 2010, 2439 |
| ApoI | RAATTY | 4 cut(s) | 222, 283, 1895, 2513 |
| AsiGI | ACCGGT | 1 cut(s) | 1541 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1490, 1622 |
| Asp718I | GGTACC | 1 cut(s) | 776 |
| AspLEI | GCGC | 2 cut(s) | 2594, 2749 |
| AspS9I | GGNCC | 6 cut(s) | 469, 655, 855, 956, 2084, 2215 |
| AsuC2I | CCSGG | 2 cut(s) | 897, 2291 |
| AsuHPI | GGTGA | 3 cut(s) | 1880, 1881, 2287 |
| AsuNHI | GCTAGC | 1 cut(s) | 677 |
| AvaII | GGWCC | 3 cut(s) | 469, 655, 855 |
| AxyI | CCTNAGG | 1 cut(s) | 1839 |
| BalI | TGGCCA | 1 cut(s) | 2376 |
| BanI | GGYRCC | 1 cut(s) | 776 |
| BanII | GRGCYC | 1 cut(s) | 2539 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 769, 801 |
| BauI | CACGAG | 1 cut(s) | 849 |
| BbsI | GAAGAC | 1 cut(s) | 2720 |
| Bbv12I | GWGCWC | 1 cut(s) | 2539 |
| BbvI | GCAGC | 7 cut(s) | 640, 647, 830, 1807, 1948, 2022, 2451 |
| BccI | CCATC | 6 cut(s) | 41, 967, 1426, 1810, 1859, 2458 |
| BceAI | ACGGC | 2 cut(s) | 1041, 2187 |
| BciT130I | CCWGG | 4 cut(s) | 296, 607, 876, 1453 |
| BciVI | GTATCC | 1 cut(s) | 875 |
| BclI | TGATCA | 3 cut(s) | 418, 1756, 2527 |
| BcnI | CCSGG | 2 cut(s) | 897, 2291 |
| BcoDI | GTCTC | 5 cut(s) | 798, 824, 1776, 2498, 2540 |
| BcuI | ACTAGT | 1 cut(s) | 1805 |
| BfaI | CTAG | 8 cut(s) | 678, 801, 1073, 1341, 1362, 1722, 1806, 2303 |
| BfmI | CTRYAG | 3 cut(s) | 267, 2422, 2437 |
| BfoI | RGCGCY | 1 cut(s) | 2750 |
| BfrI | CTTAAG | 1 cut(s) | 2776 |
| BfuI | GTATCC | 1 cut(s) | 875 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2083 |
| BlpI | GCTNAGC | 1 cut(s) | 1824 |
| BmcAI | AGTACT | 1 cut(s) | 1345 |
| Bme1390I | CCNGG | 6 cut(s) | 296, 607, 876, 897, 1453, 2291 |
| Bme18I | GGWCC | 3 cut(s) | 469, 655, 855 |
| BmgT120I | GGNCC | 6 cut(s) | 469, 655, 855, 956, 2084, 2215 |
| BmiI | GGNNCC | 4 cut(s) | 778, 856, 1154, 2729 |
| BmrFI | CCNGG | 6 cut(s) | 296, 607, 876, 897, 1453, 2291 |
| BmrI | ACTGGG | 1 cut(s) | 1541 |
| BmtI | GCTAGC | 1 cut(s) | 681 |
| BmuI | ACTGGG | 1 cut(s) | 1541 |
| BpiI | GAAGAC | 1 cut(s) | 2720 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1822, 1854, 2393, 2425 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1846 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1824 |
| BpuEI | CTTGAG | 2 cut(s) | 164, 691 |
| BpuMI | CCSGG | 2 cut(s) | 897, 2291 |
| BsaI | GGTCTC | 1 cut(s) | 2498 |
| BsaJI | CCNNGG | 7 cut(s) | 252, 572, 1452, 1571, 2218, 2508, 2660 |
| BsaWI | WCCGGW | 1 cut(s) | 1541 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 457, 573, 875, 1063, 1481, 2724 |
| Bse118I | RCCGGY | 1 cut(s) | 1541 |
| Bse1I | ACTGG | 6 cut(s) | 79, 1006, 1254, 1536, 1711, 2078 |
| Bse21I | CCTNAGG | 1 cut(s) | 1839 |
| Bse3DI | GCAATG | 2 cut(s) | 2066, 2332 |
| BseBI | CCWGG | 4 cut(s) | 296, 607, 876, 1453 |
| BseDI | CCNNGG | 7 cut(s) | 252, 572, 1452, 1571, 2218, 2508, 2660 |
| BseGI | GGATG | 8 cut(s) | 82, 725, 1139, 1195, 1297, 1603, 1821, 2656 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 457, 573, 875, 1063, 1481, 2724 |
| BseMI | GCAATG | 2 cut(s) | 2066, 2332 |
| BseNI | ACTGG | 6 cut(s) | 79, 1006, 1254, 1536, 1711, 2078 |
| BseRI | GAGGAG | 1 cut(s) | 1517 |
| BseXI | GCAGC | 7 cut(s) | 640, 647, 830, 1807, 1948, 2022, 2451 |
| BsgI | GTGCAG | 1 cut(s) | 837 |
| Bsh1236I | CGCG | 3 cut(s) | 442, 1371, 2592 |
| BshFI | GGCC | 9 cut(s) | 152, 957, 1474, 1844, 2086, 2217, 2376, 2405, 2589 |
| BshNI | GGYRCC | 1 cut(s) | 776 |
| BshTI | ACCGGT | 1 cut(s) | 1541 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2539 |
| BsiSI | CCGG | 6 cut(s) | 20, 858, 896, 1199, 1542, 2290 |
| BslFI | GGGAC | 2 cut(s) | 1549, 1896 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 457, 573, 875, 1063, 1481, 2724 |
| BsmAI | GTCTC | 5 cut(s) | 798, 824, 1776, 2498, 2540 |
| BsmFI | GGGAC | 2 cut(s) | 1549, 1896 |
| BsmI | GAATGC | 4 cut(s) | 301, 1676, 2386, 2701 |
| BsnI | GGCC | 9 cut(s) | 152, 957, 1474, 1844, 2086, 2217, 2376, 2405, 2589 |
| Bso31I | GGTCTC | 1 cut(s) | 2498 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2539 |
| Bsp143I | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1824 |
| Bsp19I | CCATGG | 3 cut(s) | 572, 1571, 2508 |
| BspACI | CCGC | 6 cut(s) | 442, 1369, 1475, 1595, 1747, 2590 |
| BspANI | GGCC | 9 cut(s) | 152, 957, 1474, 1844, 2086, 2217, 2376, 2405, 2589 |
| BspFNI | CGCG | 3 cut(s) | 442, 1371, 2592 |
| BspLI | GGNNCC | 4 cut(s) | 778, 856, 1154, 2729 |
| BspMAI | CTGCAG | 2 cut(s) | 271, 2441 |
| BspOI | GCTAGC | 1 cut(s) | 681 |
| BspPI | GGATC | 2 cut(s) | 1260, 1898 |
| BspQI | GCTCTTC | 1 cut(s) | 1452 |
| BspT107I | GGYRCC | 1 cut(s) | 776 |
| BspTI | CTTAAG | 1 cut(s) | 2776 |
| BspTNI | GGTCTC | 1 cut(s) | 2498 |
| BsrDI | GCAATG | 2 cut(s) | 2066, 2332 |
| BsrFI | RCCGGY | 1 cut(s) | 1541 |
| BsrI | ACTGG | 6 cut(s) | 79, 1006, 1254, 1536, 1711, 2078 |
| BssAI | RCCGGY | 1 cut(s) | 1541 |
| BssECI | CCNNGG | 7 cut(s) | 252, 572, 1452, 1571, 2218, 2508, 2660 |
| BssMI | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| BssNAI | GTATAC | 2 cut(s) | 353, 1921 |
| BssSI | CACGAG | 1 cut(s) | 849 |
| BssT1I | CCWWGG | 4 cut(s) | 252, 572, 1571, 2508 |
| Bst1107I | GTATAC | 2 cut(s) | 353, 1921 |
| Bst2BI | CACGAG | 1 cut(s) | 849 |
| Bst2UI | CCWGG | 4 cut(s) | 296, 607, 876, 1453 |
| Bst4CI | ACNGT | 7 cut(s) | 97, 239, 893, 1887, 1925, 2426, 2525 |
| Bst6I | CTCTTC | 2 cut(s) | 379, 1452 |
| BstAFI | CTTAAG | 1 cut(s) | 2776 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1592, 2199, 2247, 2256 |
| BstDSI | CCRYGG | 3 cut(s) | 572, 1571, 2508 |
| BstF5I | GGATG | 8 cut(s) | 82, 725, 1139, 1195, 1297, 1603, 1821, 2656 |
| BstFNI | CGCG | 3 cut(s) | 442, 1371, 2592 |
| BstH2I | RGCGCY | 1 cut(s) | 2750 |
| BstHHI | GCGC | 2 cut(s) | 2594, 2749 |
| BstKTI | GATC | 5 cut(s) | 421, 1255, 1759, 1906, 2530 |
| BstMAI | GTCTC | 5 cut(s) | 798, 824, 1776, 2498, 2540 |
| BstMBI | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 602, 1592, 2083, 2199, 2247, 2256, 2322 |
| BstNI | CCWGG | 4 cut(s) | 296, 607, 876, 1453 |
| BstNSI | RCATGY | 5 cut(s) | 416, 628, 1989, 2148, 2250 |
| BstSCI | CCNGG | 6 cut(s) | 294, 605, 874, 895, 1451, 2289 |
| BstSFI | CTRYAG | 3 cut(s) | 267, 2422, 2437 |
| BstUI | CGCG | 3 cut(s) | 442, 1371, 2592 |
| BstV1I | GCAGC | 7 cut(s) | 640, 647, 830, 1807, 1948, 2022, 2451 |
| BstV2I | GAAGAC | 1 cut(s) | 2720 |
| BstX2I | RGATCY | 1 cut(s) | 1903 |
| BstYI | RGATCY | 1 cut(s) | 1903 |
| BstZ17I | GTATAC | 2 cut(s) | 353, 1921 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1839 |
| BsuI | GTATCC | 1 cut(s) | 875 |
| BsuRI | GGCC | 9 cut(s) | 152, 957, 1474, 1844, 2086, 2217, 2376, 2405, 2589 |
| BtgI | CCRYGG | 3 cut(s) | 572, 1571, 2508 |
| BtsCI | GGATG | 8 cut(s) | 82, 725, 1139, 1195, 1297, 1603, 1821, 2656 |
| BtsI | GCAGTG | 1 cut(s) | 2236 |
| BtsIMutI | CAGTG | 9 cut(s) | 72, 93, 202, 244, 1247, 1355, 1405, 1884, 2236 |
| CaiI | CAGNNNCTG | 2 cut(s) | 386, 702 |
| CfoI | GCGC | 2 cut(s) | 2594, 2749 |
| Cfr10I | RCCGGY | 1 cut(s) | 1541 |
| Cfr13I | GGNCC | 6 cut(s) | 469, 655, 855, 956, 2084, 2215 |
| Csp6I | GTAC | 6 cut(s) | 777, 906, 1326, 1344, 2142, 2827 |
| CspAI | ACCGGT | 1 cut(s) | 1541 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 832, 867, 1946, 1981 |
| CviQI | GTAC | 6 cut(s) | 777, 906, 1326, 1344, 2142, 2827 |
| DpnI | GATC | 5 cut(s) | 420, 1254, 1758, 1905, 2529 |
| DpnII | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| DraIII | CACNNNGTG | 1 cut(s) | 2650 |
| EaeI | YGGCCR | 3 cut(s) | 1472, 2374, 2587 |
| Eam1104I | CTCTTC | 2 cut(s) | 379, 1452 |
| EarI | CTCTTC | 2 cut(s) | 379, 1452 |
| Ecl136II | GAGCTC | 1 cut(s) | 2537 |
| Eco130I | CCWWGG | 4 cut(s) | 252, 572, 1571, 2508 |
| Eco147I | AGGCCT | 2 cut(s) | 1844, 2405 |
| Eco24I | GRGCYC | 1 cut(s) | 2539 |
| Eco31I | GGTCTC | 1 cut(s) | 2498 |
| Eco32I | GATATC | 1 cut(s) | 33 |
| Eco47I | GGWCC | 3 cut(s) | 469, 655, 855 |
| Eco53kI | GAGCTC | 1 cut(s) | 2537 |
| Eco57I | CTGAAG | 6 cut(s) | 192, 363, 1103, 1566, 1569, 2592 |
| Eco81I | CCTNAGG | 1 cut(s) | 1839 |
| EcoICRI | GAGCTC | 1 cut(s) | 2537 |
| EcoO109I | RGGNCCY | 2 cut(s) | 469, 2215 |
| EcoRII | CCWGG | 4 cut(s) | 294, 605, 874, 1451 |
| EcoRV | GATATC | 1 cut(s) | 33 |
| EcoT14I | CCWWGG | 4 cut(s) | 252, 572, 1571, 2508 |
| EcoT22I | ATGCAT | 1 cut(s) | 2388 |
| EcoT38I | GRGCYC | 1 cut(s) | 2539 |
| ErhI | CCWWGG | 4 cut(s) | 252, 572, 1571, 2508 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1772, 1804 |
| FaqI | GGGAC | 2 cut(s) | 1549, 1896 |
| FauNDI | CATATG | 2 cut(s) | 178, 1446 |
| FbaI | TGATCA | 3 cut(s) | 418, 1756, 2527 |
| FblI | GTMKAC | 3 cut(s) | 352, 797, 1920 |
| FokI | GGATG | 8 cut(s) | 69, 732, 1146, 1182, 1304, 1610, 1828, 2643 |
| FriOI | GRGCYC | 1 cut(s) | 2539 |
| FspBI | CTAG | 8 cut(s) | 678, 801, 1073, 1341, 1362, 1722, 1806, 2303 |
| GlaI | GCGC | 2 cut(s) | 2593, 2748 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HaeII | RGCGCY | 1 cut(s) | 2750 |
| HaeIII | GGCC | 9 cut(s) | 152, 957, 1474, 1844, 2086, 2217, 2376, 2405, 2589 |
| HapII | CCGG | 6 cut(s) | 20, 858, 896, 1199, 1542, 2290 |
| HhaI | GCGC | 2 cut(s) | 2594, 2749 |
| Hin6I | GCGC | 2 cut(s) | 2592, 2747 |
| HinP1I | GCGC | 2 cut(s) | 2592, 2747 |
| HincII | GTYRAC | 1 cut(s) | 798 |
| HindII | GTYRAC | 1 cut(s) | 798 |
| HindIII | AAGCTT | 1 cut(s) | 1712 |
| HpaII | CCGG | 6 cut(s) | 20, 858, 896, 1199, 1542, 2290 |
| HphI | GGTGA | 3 cut(s) | 1880, 1881, 2287 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 172, 643, 1291, 2415 |
| Hpy188III | TCNNGA | 9 cut(s) | 749, 1073, 1212, 1417, 1901, 1907, 2451, 2570, 2731 |
| Hpy99I | CGWCG | 1 cut(s) | 2464 |
| HpyAV | CCTTC | 9 cut(s) | 142, 308, 352, 482, 919, 1325, 2112, 2206, 2567 |
| HpyCH4III | ACNGT | 7 cut(s) | 97, 239, 893, 1887, 1925, 2426, 2525 |
| HpyCH4IV | ACGT | 2 cut(s) | 1763, 2172 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 602, 1592, 2083, 2199, 2247, 2256, 2322 |
| HpySE526I | ACGT | 2 cut(s) | 1763, 2172 |
| HspAI | GCGC | 2 cut(s) | 2592, 2747 |
| KpnI | GGTACC | 1 cut(s) | 780 |
| Ksp22I | TGATCA | 3 cut(s) | 418, 1756, 2527 |
| Kzo9I | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| LguI | GCTCTTC | 1 cut(s) | 1452 |
| LmnI | GCTCC | 4 cut(s) | 50, 298, 1152, 1504 |
| Lsp1109I | GCAGC | 7 cut(s) | 640, 647, 830, 1807, 1948, 2022, 2451 |
| MaeI | CTAG | 8 cut(s) | 678, 801, 1073, 1341, 1362, 1722, 1806, 2303 |
| MaeII | ACGT | 2 cut(s) | 1763, 2172 |
| MalI | GATC | 5 cut(s) | 420, 1254, 1758, 1905, 2529 |
| MboI | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| MfeI | CAATTG | 4 cut(s) | 1020, 1099, 2022, 2251 |
| MflI | RGATCY | 1 cut(s) | 1903 |
| MhlI | GDGCHC | 1 cut(s) | 2539 |
| MlsI | TGGCCA | 1 cut(s) | 2376 |
| MluNI | TGGCCA | 1 cut(s) | 2376 |
| MlyI | GAGTC | 6 cut(s) | 257, 1086, 1243, 1367, 2425, 2442 |
| MmeI | TCCRAC | 1 cut(s) | 2670 |
| Mox20I | TGGCCA | 1 cut(s) | 2376 |
| Mph1103I | ATGCAT | 1 cut(s) | 2388 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1490, 1622 |
| MscI | TGGCCA | 1 cut(s) | 2376 |
| MseI | TTAA | 9 cut(s) | 120, 393, 437, 690, 888, 921, 2067, 2678, 2777 |
| MslI | CAYNNNNRTG | 4 cut(s) | 98, 450, 1173, 2837 |
| Msp20I | TGGCCA | 1 cut(s) | 2376 |
| MspA1I | CMGCKG | 1 cut(s) | 631 |
| MspCI | CTTAAG | 1 cut(s) | 2776 |
| MspI | CCGG | 6 cut(s) | 20, 858, 896, 1199, 1542, 2290 |
| MspR9I | CCNGG | 6 cut(s) | 296, 607, 876, 897, 1453, 2291 |
| MunI | CAATTG | 4 cut(s) | 1020, 1099, 2022, 2251 |
| Mva1269I | GAATGC | 4 cut(s) | 301, 1676, 2386, 2701 |
| MvaI | CCWGG | 4 cut(s) | 296, 607, 876, 1453 |
| MvnI | CGCG | 3 cut(s) | 442, 1371, 2592 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 602, 1592, 2083, 2199, 2247, 2256, 2322 |
| NciI | CCSGG | 2 cut(s) | 897, 2291 |
| NcoI | CCATGG | 3 cut(s) | 572, 1571, 2508 |
| NdeI | CATATG | 2 cut(s) | 178, 1446 |
| NdeII | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| NheI | GCTAGC | 1 cut(s) | 677 |
| NlaIV | GGNNCC | 4 cut(s) | 778, 856, 1154, 2729 |
| NmeAIII | GCCGAG | 1 cut(s) | 2199 |
| NmuCI | GTSAC | 7 cut(s) | 197, 1058, 1235, 1364, 1868, 1887, 2417 |
| NsiI | ATGCAT | 1 cut(s) | 2388 |
| NspI | RCATGY | 5 cut(s) | 416, 628, 1989, 2148, 2250 |
| PceI | AGGCCT | 2 cut(s) | 1844, 2405 |
| PciI | ACATGT | 2 cut(s) | 412, 1985 |
| PciSI | GCTCTTC | 1 cut(s) | 1452 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2456 |
| PctI | GAATGC | 4 cut(s) | 301, 1676, 2386, 2701 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1490, 1622 |
| PfeI | GAWTC | 6 cut(s) | 1082, 1208, 1795, 1874, 2115, 2580 |
| PfoI | TCCNGGA | 2 cut(s) | 294, 874 |
| PinAI | ACCGGT | 1 cut(s) | 1541 |
| PleI | GAGTC | 6 cut(s) | 256, 1086, 1242, 1366, 2424, 2441 |
| PpsI | GAGTC | 6 cut(s) | 256, 1086, 1242, 1366, 2424, 2441 |
| PpuMI | RGGWCCY | 1 cut(s) | 469 |
| PscI | ACATGT | 2 cut(s) | 412, 1985 |
| Psp124BI | GAGCTC | 1 cut(s) | 2539 |
| Psp5II | RGGWCCY | 1 cut(s) | 469 |
| Psp6I | CCWGG | 4 cut(s) | 294, 605, 874, 1451 |
| PspGI | CCWGG | 4 cut(s) | 294, 605, 874, 1451 |
| PspN4I | GGNNCC | 4 cut(s) | 778, 856, 1154, 2729 |
| PspPI | GGNCC | 6 cut(s) | 469, 655, 855, 956, 2084, 2215 |
| PspPPI | RGGWCCY | 1 cut(s) | 469 |
| PstI | CTGCAG | 2 cut(s) | 271, 2441 |
| PstNI | CAGNNNCTG | 2 cut(s) | 386, 702 |
| PsuI | RGATCY | 1 cut(s) | 1903 |
| PvuII | CAGCTG | 1 cut(s) | 631 |
| RsaI | GTAC | 6 cut(s) | 778, 907, 1327, 1345, 2143, 2828 |
| RsaNI | GTAC | 6 cut(s) | 777, 906, 1326, 1344, 2142, 2827 |
| RseI | CAYNNNNRTG | 4 cut(s) | 98, 450, 1173, 2837 |
| SacI | GAGCTC | 1 cut(s) | 2539 |
| SalI | GTCGAC | 1 cut(s) | 796 |
| SapI | GCTCTTC | 1 cut(s) | 1452 |
| SaqAI | TTAA | 9 cut(s) | 120, 393, 437, 690, 888, 921, 2067, 2678, 2777 |
| Sau3AI | GATC | 5 cut(s) | 418, 1252, 1756, 1903, 2527 |
| Sau96I | GGNCC | 6 cut(s) | 469, 655, 855, 956, 2084, 2215 |
| ScaI | AGTACT | 1 cut(s) | 1345 |
| SchI | GAGTC | 6 cut(s) | 257, 1086, 1243, 1367, 2425, 2442 |
| ScrFI | CCNGG | 6 cut(s) | 296, 607, 876, 897, 1453, 2291 |
| SduI | GDGCHC | 1 cut(s) | 2539 |
| SfcI | CTRYAG | 3 cut(s) | 267, 2422, 2437 |
| SinI | GGWCC | 3 cut(s) | 469, 655, 855 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 98, 450, 1173, 2837 |
| SmlI | CTYRAG | 3 cut(s) | 143, 706, 2776 |
| SmoI | CTYRAG | 3 cut(s) | 143, 706, 2776 |
| SpeI | ACTAGT | 1 cut(s) | 1805 |
| SseBI | AGGCCT | 2 cut(s) | 1844, 2405 |
| SsiI | CCGC | 6 cut(s) | 442, 1369, 1475, 1595, 1747, 2590 |
| SspI | AATATT | 2 cut(s) | 1285, 2071 |
| SspMI | CTAG | 8 cut(s) | 678, 801, 1073, 1341, 1362, 1722, 1806, 2303 |
| SstI | GAGCTC | 1 cut(s) | 2539 |
| StuI | AGGCCT | 2 cut(s) | 1844, 2405 |
| StyD4I | CCNGG | 6 cut(s) | 294, 605, 874, 895, 1451, 2289 |
| StyI | CCWWGG | 4 cut(s) | 252, 572, 1571, 2508 |
| TaaI | ACNGT | 7 cut(s) | 97, 239, 893, 1887, 1925, 2426, 2525 |
| TaiI | ACGT | 2 cut(s) | 1766, 2175 |
| TaqI | TCGA | 6 cut(s) | 90, 618, 797, 1900, 2096, 2431 |
| TaqII | GACCGA | 1 cut(s) | 752 |
| TatI | WGTACW | 3 cut(s) | 1343, 2141, 2826 |
| TauI | GCSGC | 4 cut(s) | 445, 1477, 1750, 2592 |
| TfiI | GAWTC | 6 cut(s) | 1082, 1208, 1795, 1874, 2115, 2580 |
| Tru1I | TTAA | 9 cut(s) | 120, 393, 437, 690, 888, 921, 2067, 2678, 2777 |
| Tru9I | TTAA | 9 cut(s) | 120, 393, 437, 690, 888, 921, 2067, 2678, 2777 |
| TscAI | CASTG | 9 cut(s) | 79, 100, 202, 244, 1254, 1355, 1405, 1884, 2243 |
| TseFI | GTSAC | 7 cut(s) | 197, 1058, 1235, 1364, 1868, 1887, 2417 |
| TseI | GCWGC | 7 cut(s) | 628, 635, 818, 1820, 1961, 2010, 2439 |
| Tsp45I | GTSAC | 7 cut(s) | 197, 1058, 1235, 1364, 1868, 1887, 2417 |
| TspGWI | ACGGA | 1 cut(s) | 2127 |
| TspRI | CASTG | 9 cut(s) | 79, 100, 202, 244, 1254, 1355, 1405, 1884, 2243 |
| Vha464I | CTTAAG | 1 cut(s) | 2776 |
| VpaK11BI | GGWCC | 3 cut(s) | 469, 655, 855 |
| XapI | RAATTY | 4 cut(s) | 222, 283, 1895, 2513 |
| XbaI | TCTAGA | 1 cut(s) | 1072 |
| XceI | RCATGY | 5 cut(s) | 416, 628, 1989, 2148, 2250 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 665 |
| XmiI | GTMKAC | 3 cut(s) | 352, 797, 1920 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1490, 1622 |
| XspI | CTAG | 8 cut(s) | 678, 801, 1073, 1341, 1362, 1722, 1806, 2303 |
| ZrmI | AGTACT | 1 cut(s) | 1345 |
| Zsp2I | ATGCAT | 1 cut(s) | 2388 |