Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014789

Physical Location & Seq

Genomic Coordinates Forward (+)

22940026 .. 22947068

Gene Structure 7043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3279 bp

ATGGCATTGCAAAAGGAAAAGGCATCATCCCCATCCAAGCCACATTCACCACTTTCAATAATTATATTCATTCACAAAGCAATGTCTAATGAGCTTGATGTGCTTCAACGATCAACAATATTGGGCTATGCCAACGGCCAAAGTGTAGAATTTCGGGCATTTTTTGAGCGGTGCAACTTTCTAAAATTAATTTATGAAAACTACTTGAGTGTCAAAGATGAGGTGATATATGCAGCTGTTGATGCACGGGTCAAAAATATAGCAGAAACCTACTTCCTTCAACACCAGAATCAAATACTTGTTTTCGATCATCTGTTTAAGCCGCTAATTTCTAGCATACAAAATGAGGAAAATATTCCAAGCAAGGTGTTGCTGTGCTTTACAGGATCCCTTCAAACAATGTTTAGCCAGTGTATGGCCAAGGAAGAGGAGCAGATCATCCCTTTGCTCATTCAGAAATTCTCAGTTGAAGAGCAAGCTTCATTAGTCTGGAAGCTTTTGAGCAGCATCCCCACGAATATAGTAGCTAAACTCATTCCCTGGCTAGCGTCCTCCTTGTCACTTGATGAATGTCAGCATCTGTACAAGTGCTTAAGTATGATAGTACCAGCCGAGAAGCTTCTCCAAGAGGTCATTTTCACCTGGATGGAAGGAAAAGACAATTGTGCTGGCATGACAGCTGATCGAAAAGATGATACAAGTTGTGCATATGAGTTCAATGGGGTGTATCCAATAGATGATATGTTGCTTTGGCATCATGCTATTGAGACAGAGTTGAATGAAACACTTGCGGAAGAGAAGAAGATGTCTATTTCTGGAGATGTTATTAATTATGATTTACTGGCTTTCTATGACAGGCTGCAATTTATTGCTGAAATTTGCATGTTTCACAGTATTGCTGAGGAAACGGTTCTATATCCTGCAGTGTATGGAGAAATTTCAATTTTCCATGAGCACAGAAATGAAGTAAATCTAACCAATGAGTTTAGGTGTTTGCTCGAAAGTTTAAAAAGCGCATCAACAATTCCTTCCACAGCTGCTGAATTTCATTCAAAGATATGCTCCCGTGCTGATCAAATAATGAAAACTTTAAAGGCGCATTTCCATGATGAGGAAGTTAAGGTACTTCCACTTGTTCGAAAGCACTTGAGCATTAAAAAACAACAGGAACTTCTGCATCAGAGCTTGTGTGTGATGCCCTTGAAACTAATTGAGCGTGTCTTGCCATGGCTGGTAAAGTCATTGACTGCAAATGAAGCCCAGAATTTTGTCAATAACATGCAGTTGGCAGCTCCAGCATCAGATATCGCACTGGTGCAGCTCTTTTGTGGTTGGGCTAGTAAGGCTTCTAATGACTGCCTATGCTCATCTAGTTCCTTGCATATCAACTCTATGTCACCATCACATTCAGTTTGTGAAAAATCCAATAGCTGTTCTACCACTGGAATACCTGCACAACCAATAGATGTTGTTTTTAAAGTTCATAAGGCCATACGCCGTGACTTGGAATATCTAGACACTGAATCTGAAAGGCTTAGTAACTGTGATGAAATATTTCTTCAGCAGTTCATTGAAAGTTTCTGTTTGTTATGGGGCTTATATAGAGCTCATAGTAATGCAGAGGATTTTGTATTGTATCCGGCAATGGAATCCAGAGACACACTTCAAAATGTAAGTCACTCCTACACACTTGATCATAAGCAAGAGGAAGATGCATTTGAAAATATTTCAGGTGTTCTTCTTGAGCTTTCTCAGCTTCACAGAGGTACAAGATCTGGTGCCCCCATAAGTAAATGTGTGGGAAAGTACCATGAGCTGGCAAACAAGCTTCGAATAATGTTCATGTCGCTAAGAATGATGGTAGATGAGCACATGTACCAGGAAGAGCTTGAGCTGTGGCCATTATTTGGAGCACACTTCTCTGTGGAGGAGCACAACAAAATGATCGGTTTCATACTGGGGACTACAGGTGCTGAAGTTCTCCAATCTATGTTACCATGGGTTACTTCTGCACTTTCTGAGGATGAACGGAGTAAAATGATGGATACCTTCAAGAATGTTACAAAAAATACAATGTTCAAGGAGTGGCTTAGTGAATGCGGGAAAGGAAGCTTACTGTCAACTCTACCGCCTAAACCAGAAACTAGCATTTTCATAAAAGGTACTGGATTTGAAGAAAGCCATCACCAAATTGATCATACTTTCAACTCTCATACGCGGAATGACTTGAAGCATCAAATGACTAGTTACTGGATTGCTGCTCAGCAGAGTTTAACTATAGCAATAGCAGTGGATAGTTCAAATAGTGAACAGCTAGAGGAACTGTCACCAACGTTTCGAGATCATGAGAAAACAGTGTATGGCTGCCAGCATTACAAGAGAAACTGCAAACTCCTAGCTGCTTGCTGCGGCAAACTGTTCACTTGTAGATTTTGCCATGACATTATGAGCGACCACCCAATGGATAGGAAAGCAACATCCAAAATGATGTGTATGAGCTGTCTTAATATTCAGCCAGTTGGGTCAGTATGCTCGACAGCTTCTTGCAATGGATTTCCAATGGCAAAATATTATTGTAATATTTGCAACCTCTTTGATGATGACAGGAATGTCTACCACTGTCCATTCTGCAACTTATGCCGAGTAGGGAAGGGCCTTGGCATTGATTATTTTCACTGCATGTCGTGCAATTGTTGCATGGGGATGGCTTCGGTGAACCACAAGTGCCAGGAGAAATGTCTAGAAACCAACTGCCCTGTCTGCAATGAGTTCCTATTCACATCAAGTTCAAGAATCAAAGCTTTACCATGTGGCCATTGTATGCATTTAGCTTGCTTCAAGAGCAACAGTCAATACACTTGTCCAGTTTGCAGCAAATCTTCAGGAGCTACGATGATGACATCAACTCAATCCTCACTACTTGTGGATGGTGATGAGACCATGGAATTTTATAGCTATGACCAAAAAACTGAAATGACTTCATGCACTGATATTAATCCTGAAGGGAGATTTTTCATGCGCACGAGCTTCTGGGTAAATATTTTATATCAGCTTGTCTTATGGTTTGAACACCTTAATGGAAGAATAGTTCTACCAAGATTCCTGCAAAGATTAAAAAGGGGATTGGAGAATGGAGTAGCAGGACAGAAGGCTAAAGAGAGGTGTGTGTTGTGTTGTGTGGTGCTCTGCGGTCTGGTGTTGTTTTGTGTCTTAAGTACTCTTCTAATTTTGCTTGGGTTCAAAGCATTAGGAAGAAACAAGTACATTCAACTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1092

Amino Acids

124.04

Weight (kDa)

6.05

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	789 - 857	5.8e-18	CHY zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014789)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05930 FvH4_7g05930 FvH4_7g05930
malus_domestica	MD07G1068200.v1.1
prunus_persica	Prupe.2G085600_v2.0.a1
pyrus_communis	pycom07g05230
rosa_chinensis	RchiOBHm_Chr1g0333131
rosa_laevigata	RLG00000029624
rosa_multiflora	Rmu_sc0007432.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317770
rosa_rugosa	Rorug01G0107300 Rorug01G0107400
rosa_samantha	Rh1AG130600 Rh1BG099700 Rh1CG124400 Rh1DG135900
rosa_wichuraiana	Rw1G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2609
Acc16I	TGCGCA	1 cut(s)	3020
Acc36I	ACCTGC	1 cut(s)	1459
AccB1I	GGYRCC	1 cut(s)	1778
AccB7I	CCANNNNNTGG	4 cut(s)	415, 1816, 1907, 2461
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	2613
AccII	CGCG	1 cut(s)	2218
AciI	CCGC	8 cut(s)	169, 323, 791, 2100, 2129, 2218, 2409, 3189
AclI	AACGTT	1 cut(s)	2333
AclWI	GGATC	2 cut(s)	381, 394
AcoI	YGGCCR	4 cut(s)	136, 417, 1898, 2812
AcsI	RAATTY	7 cut(s)	149, 458, 876, 936, 1043, 1264, 2945
AcuI	CTGAAG	4 cut(s)	1544, 1995, 2865, 3021
AfaI	GTAC	9 cut(s)	584, 606, 1125, 1768, 1808, 1877, 2164, 3217, 3263
AfiI	CCNNNNNNNGG	6 cut(s)	415, 1111, 1504, 1816, 1907, 2461
AflII	CTTAAG	2 cut(s)	592, 3211
AflIII	ACRYGT	1 cut(s)	1872
AhlI	ACTAGT	1 cut(s)	2243
AjnI	CCWGG	4 cut(s)	539, 641, 1878, 2727
AloI	GAACNNNNNNTCC	2 cut(s)	3072, 3104
Alw21I	GWGCWC	6 cut(s)	957, 1609, 1872, 1915, 1935, 3186
Alw26I	GTCTC	3 cut(s)	761, 1650, 2930
AlwI	GGATC	2 cut(s)	381, 394
AlwNI	CAGNNNCTG	3 cut(s)	580, 1040, 1973
AoxI	GGCC	6 cut(s)	136, 417, 1488, 1898, 2653, 2812
ApoI	RAATTY	7 cut(s)	149, 458, 876, 936, 1043, 1264, 2945
ArsI	GACNNNNNNTTYG	2 cut(s)	1660, 1692
AseI	ATTAAT	3 cut(s)	188, 828, 2994
Asp700I	GAANNNNTTC	3 cut(s)	354, 909, 1554
AspLEI	GCGC	3 cut(s)	1016, 1099, 3021
AspS9I	GGNCC	1 cut(s)	2653
AsuHPI	GGTGA	8 cut(s)	39, 235, 631, 1389, 2177, 2319, 2725, 2942
AsuII	TTCGAA	2 cut(s)	1138, 1831
AsuNHI	GCTAGC	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	1783
BalI	TGGCCA	3 cut(s)	419, 1900, 2814
BamHI	GGATCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	1778
BanII	GRGCYC	1 cut(s)	1609
BarI	GAAGNNNNNNTAC	2 cut(s)	1107, 1139
BauI	CACGAG	1 cut(s)	3022
Bbv12I	GWGCWC	6 cut(s)	957, 1609, 1872, 1915, 1935, 3186
BbvCI	CCTCAGC	1 cut(s)	900
BccI	CCATC	8 cut(s)	40, 640, 1408, 1852, 2035, 2190, 2698, 2921
BceAI	ACGGC	2 cut(s)	151, 1482
BciT130I	CCWGG	4 cut(s)	541, 643, 1880, 2729
BciVI	GTATCC	3 cut(s)	738, 1647, 2038
BclI	TGATCA	3 cut(s)	1072, 1693, 2194
BcoDI	GTCTC	3 cut(s)	761, 1650, 2930
BcuI	ACTAGT	1 cut(s)	2243
BfmI	CTRYAG	3 cut(s)	921, 1965, 2277
BfrI	CTTAAG	2 cut(s)	592, 3211
BfuAI	ACCTGC	1 cut(s)	1459
BfuI	GTATCC	3 cut(s)	738, 1647, 2038
BglII	AGATCT	1 cut(s)	1772
BlpI	GCTNAGC	1 cut(s)	2262
BmcAI	AGTACT	1 cut(s)	3217
Bme1390I	CCNGG	4 cut(s)	541, 643, 1880, 2729
BmgT120I	GGNCC	1 cut(s)	2653
BmiI	GGNNCC	2 cut(s)	388, 1780
BmrFI	CCNGG	4 cut(s)	541, 643, 1880, 2729
BmrI	ACTGGG	1 cut(s)	1967
BmtI	GCTAGC	1 cut(s)	548
BmuI	ACTGGG	1 cut(s)	1967
BpmI	CTGGAG	2 cut(s)	837, 1278
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu1102I	GCTNAGC	1 cut(s)	2262
Bpu14I	TTCGAA	2 cut(s)	1138, 1831
BpuEI	CTTGAG	4 cut(s)	226, 1168, 1763, 1910
BsaBI	GATNNNNATC	1 cut(s)	2994
BsaI	GGTCTC	1 cut(s)	2930
BsaJI	CCNNGG	6 cut(s)	420, 539, 1226, 1997, 2656, 2940
Bsc4I	CCNNNNNNNGG	6 cut(s)	415, 1111, 1504, 1816, 1907, 2461
Bse1I	ACTGG	9 cut(s)	409, 846, 1317, 1447, 1962, 2170, 2255, 2516, 2864
Bse3DI	GCAATG	5 cut(s)	5, 87, 1650, 2554, 2770
Bse8I	GATNNNNATC	1 cut(s)	2994
BseBI	CCWGG	4 cut(s)	541, 643, 1880, 2729
BseDI	CCNNGG	6 cut(s)	420, 539, 1226, 1997, 2656, 2940
BseGI	GGATG	9 cut(s)	26, 32, 438, 507, 651, 2029, 2477, 2709, 2932
BseJI	GATNNNNATC	1 cut(s)	2994
BseLI	CCNNNNNNNGG	6 cut(s)	415, 1111, 1504, 1816, 1907, 2461
BseMI	GCAATG	5 cut(s)	5, 87, 1650, 2554, 2770
BseMII	CTCAG	5 cut(s)	477, 891, 1766, 2010, 2276
BseNI	ACTGG	9 cut(s)	409, 846, 1317, 1447, 1962, 2170, 2255, 2516, 2864
BseRI	GAGGAG	2 cut(s)	443, 1943
BseSI	GKGCMC	1 cut(s)	1783
BsgI	GTGCAG	3 cut(s)	1337, 1437, 1995
Bsh1236I	CGCG	1 cut(s)	2218
BshFI	GGCC	6 cut(s)	138, 419, 1490, 1900, 2655, 2814
BshNI	GGYRCC	1 cut(s)	1778
BsiHKAI	GWGCWC	6 cut(s)	957, 1609, 1872, 1915, 1935, 3186
BsiSI	CCGG	1 cut(s)	1640
BslFI	GGGAC	1 cut(s)	1975
BslI	CCNNNNNNNGG	6 cut(s)	415, 1111, 1504, 1816, 1907, 2461
BsmAI	GTCTC	3 cut(s)	761, 1650, 2930
BsmFI	GGGAC	1 cut(s)	1975
BsmI	GAATGC	1 cut(s)	2102
BsnI	GGCC	6 cut(s)	138, 419, 1490, 1900, 2655, 2814
Bso31I	GGTCTC	1 cut(s)	2930
Bsp119I	TTCGAA	2 cut(s)	1138, 1831
Bsp1286I	GDGCHC	7 cut(s)	957, 1609, 1783, 1872, 1915, 1935, 3186
Bsp1407I	TGTACA	1 cut(s)	582
Bsp1720I	GCTNAGC	1 cut(s)	2262
Bsp19I	CCATGG	3 cut(s)	1226, 1997, 2940
BspACI	CCGC	8 cut(s)	169, 323, 791, 2100, 2129, 2218, 2409, 3189
BspANI	GGCC	6 cut(s)	138, 419, 1490, 1900, 2655, 2814
BspCNI	CTCAG	5 cut(s)	476, 892, 1765, 2011, 2275
BspFNI	CGCG	1 cut(s)	2218
BspHI	TCATGA	1 cut(s)	2344
BspLI	GGNNCC	2 cut(s)	388, 1780
BspMAI	CTGCAG	1 cut(s)	925
BspMI	ACCTGC	1 cut(s)	1459
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	381, 394
BspQI	GCTCTTC	2 cut(s)	465, 1878
BspT104I	TTCGAA	2 cut(s)	1138, 1831
BspT107I	GGYRCC	1 cut(s)	1778
BspTI	CTTAAG	2 cut(s)	592, 3211
BspTNI	GGTCTC	1 cut(s)	2930
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	5 cut(s)	5, 87, 1650, 2554, 2770
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	9 cut(s)	409, 846, 1317, 1447, 1962, 2170, 2255, 2516, 2864
BssECI	CCNNGG	6 cut(s)	420, 539, 1226, 1997, 2656, 2940
BssSI	CACGAG	1 cut(s)	3022
BssT1I	CCWWGG	5 cut(s)	420, 1226, 1997, 2656, 2940
Bst2BI	CACGAG	1 cut(s)	3022
Bst2UI	CCWGG	4 cut(s)	541, 643, 1880, 2729
Bst4CI	ACNGT	9 cut(s)	893, 910, 1544, 2118, 2325, 2356, 2418, 2621, 2849
Bst6I	CTCTTC	5 cut(s)	420, 465, 789, 1878, 3225
BstAFI	CTTAAG	2 cut(s)	592, 3211
BstAPI	GCANNNNNTGC	3 cut(s)	2637, 2685, 2694
BstAUI	TGTACA	1 cut(s)	582
BstBI	TTCGAA	2 cut(s)	1138, 1831
BstC8I	GCNNGC	7 cut(s)	477, 546, 670, 1818, 2369, 2404, 2833
BstDEI	CTNAG	8 cut(s)	463, 900, 1535, 1752, 1850, 2019, 2090, 2262
BstDSI	CCRYGG	3 cut(s)	1226, 1997, 2940
BstF5I	GGATG	9 cut(s)	26, 32, 438, 507, 651, 2029, 2477, 2709, 2932
BstFNI	CGCG	1 cut(s)	2218
BstHHI	GCGC	3 cut(s)	1016, 1099, 3021
BstMAI	GTCTC	3 cut(s)	761, 1650, 2930
BstNI	CCWGG	4 cut(s)	541, 643, 1880, 2729
BstNSI	RCATGY	4 cut(s)	886, 1282, 1876, 2683
BstSCI	CCNGG	4 cut(s)	539, 641, 1878, 2727
BstSFI	CTRYAG	3 cut(s)	921, 1965, 2277
BstSLI	GKGCMC	1 cut(s)	1783
BstUI	CGCG	1 cut(s)	2218
BstX2I	RGATCY	2 cut(s)	386, 1772
BstYI	RGATCY	2 cut(s)	386, 1772
BsuI	GTATCC	3 cut(s)	738, 1647, 2038
BsuRI	GGCC	6 cut(s)	138, 419, 1490, 1900, 2655, 2814
BtgI	CCRYGG	3 cut(s)	1226, 1997, 2940
BtsCI	GGATG	9 cut(s)	26, 32, 438, 507, 651, 2029, 2477, 2709, 2932
BtsI	GCAGTG	3 cut(s)	930, 2295, 2674
BveI	ACCTGC	1 cut(s)	1459
Cac8I	GCNNGC	7 cut(s)	477, 546, 670, 1818, 2369, 2404, 2833
CaiI	CAGNNNCTG	3 cut(s)	580, 1040, 1973
CciI	TCATGA	1 cut(s)	2344
CfoI	GCGC	3 cut(s)	1016, 1099, 3021
Cfr13I	GGNCC	1 cut(s)	2653
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	9 cut(s)	583, 605, 1124, 1767, 1807, 1876, 2163, 3216, 3262
CspCI	CAANNNNNGTGG	2 cut(s)	2271, 2306
CviQI	GTAC	9 cut(s)	583, 605, 1124, 1767, 1807, 1876, 2163, 3216, 3262
DdeI	CTNAG	8 cut(s)	463, 900, 1535, 1752, 1850, 2019, 2090, 2262
DraI	TTTAAA	3 cut(s)	1008, 1092, 1477
DrdI	GACNNNNNNGTC	1 cut(s)	2609
DseDI	GACNNNNNNGTC	1 cut(s)	2609
EaeI	YGGCCR	4 cut(s)	136, 417, 1898, 2812
Eam1104I	CTCTTC	5 cut(s)	420, 465, 789, 1878, 3225
EarI	CTCTTC	5 cut(s)	420, 465, 789, 1878, 3225
Ecl136II	GAGCTC	1 cut(s)	1607
Eco130I	CCWWGG	5 cut(s)	420, 1226, 1997, 2656, 2940
Eco24I	GRGCYC	1 cut(s)	1609
Eco31I	GGTCTC	1 cut(s)	2930
Eco32I	GATATC	1 cut(s)	1306
Eco53kI	GAGCTC	1 cut(s)	1607
Eco57I	CTGAAG	4 cut(s)	1544, 1995, 2865, 3021
EcoICRI	GAGCTC	1 cut(s)	1607
EcoO109I	RGGNCCY	1 cut(s)	2653
EcoRII	CCWGG	4 cut(s)	539, 641, 1878, 2727
EcoRV	GATATC	1 cut(s)	1306
EcoT14I	CCWWGG	5 cut(s)	420, 1226, 1997, 2656, 2940
EcoT22I	ATGCAT	2 cut(s)	1717, 2826
EcoT38I	GRGCYC	1 cut(s)	1609
ErhI	CCWWGG	5 cut(s)	420, 1226, 1997, 2656, 2940
FaqI	GGGAC	1 cut(s)	1975
FauI	CCCGC	1 cut(s)	2093
FauNDI	CATATG	1 cut(s)	709
FbaI	TGATCA	3 cut(s)	1072, 1693, 2194
FblI	GTMKAC	1 cut(s)	2613
FokI	GGATG	9 cut(s)	13, 19, 425, 494, 658, 2036, 2464, 2716, 2939
FriOI	GRGCYC	1 cut(s)	1609
FspAI	RTGCGCAY	1 cut(s)	3020
FspI	TGCGCA	1 cut(s)	3020
GlaI	GCGC	3 cut(s)	1015, 1098, 3020
GsuI	CTGGAG	2 cut(s)	837, 1278
HaeIII	GGCC	6 cut(s)	138, 419, 1490, 1900, 2655, 2814
HapII	CCGG	1 cut(s)	1640
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	3 cut(s)	1016, 1099, 3021
Hin6I	GCGC	3 cut(s)	1014, 1097, 3019
HinP1I	GCGC	3 cut(s)	1014, 1097, 3019
HincII	GTYRAC	1 cut(s)	2121
HindII	GTYRAC	1 cut(s)	2121
HindIII	AAGCTT	6 cut(s)	477, 494, 617, 1826, 2110, 2799
HinfI	GANTC	5 cut(s)	289, 1523, 1649, 2793, 3099
HpaII	CCGG	1 cut(s)	1640
HphI	GGTGA	8 cut(s)	39, 235, 631, 1389, 2177, 2319, 2725, 2942
Hpy166II	GTNNAC	5 cut(s)	2121, 2309, 2421, 2614, 2716
Hpy188I	TCNGA	5 cut(s)	456, 1182, 1303, 1528, 2020
Hpy8I	GTNNAC	5 cut(s)	2121, 2309, 2421, 2614, 2716
HpyAV	CCTTC	8 cut(s)	287, 401, 644, 1038, 2059, 2644, 2996, 3142
HpyCH4III	ACNGT	9 cut(s)	893, 910, 1544, 2118, 2325, 2356, 2418, 2621, 2849
HpyCH4IV	ACGT	1 cut(s)	2333
HpyF3I	CTNAG	8 cut(s)	463, 900, 1535, 1752, 1850, 2019, 2090, 2262
HpySE526I	ACGT	1 cut(s)	2333
HspAI	GCGC	3 cut(s)	1014, 1097, 3019
Ksp22I	TGATCA	3 cut(s)	1072, 1693, 2194
LguI	GCTCTTC	2 cut(s)	465, 1878
LmnI	GCTCC	6 cut(s)	430, 1067, 1297, 1910, 1930, 2885
MaeII	ACGT	1 cut(s)	2333
MbiI	CCGCTC	1 cut(s)	169
MfeI	CAATTG	2 cut(s)	661, 2689
MflI	RGATCY	2 cut(s)	386, 1772
MhlI	GDGCHC	7 cut(s)	957, 1609, 1783, 1872, 1915, 1935, 3186
MlsI	TGGCCA	3 cut(s)	419, 1900, 2814
MluNI	TGGCCA	3 cut(s)	419, 1900, 2814
Mox20I	TGGCCA	3 cut(s)	419, 1900, 2814
Mph1103I	ATGCAT	2 cut(s)	1717, 2826
MroXI	GAANNNNTTC	3 cut(s)	354, 909, 1554
MscI	TGGCCA	3 cut(s)	419, 1900, 2814
MslI	CAYNNNNRTG	6 cut(s)	644, 960, 1104, 1614, 2702, 3075
Msp20I	TGGCCA	3 cut(s)	419, 1900, 2814
MspA1I	CMGCKG	3 cut(s)	236, 680, 1037
MspCI	CTTAAG	2 cut(s)	592, 3211
MspI	CCGG	1 cut(s)	1640
MspR9I	CCNGG	4 cut(s)	541, 643, 1880, 2729
MunI	CAATTG	2 cut(s)	661, 2689
Mva1269I	GAATGC	1 cut(s)	2102
MvaI	CCWGG	4 cut(s)	541, 643, 1880, 2729
MvnI	CGCG	1 cut(s)	2218
NcoI	CCATGG	3 cut(s)	1226, 1997, 2940
NdeI	CATATG	1 cut(s)	709
NheI	GCTAGC	1 cut(s)	544
NlaIV	GGNNCC	2 cut(s)	388, 1780
NmeAIII	GCCGAG	2 cut(s)	637, 2666
NmuCI	GTSAC	5 cut(s)	558, 1395, 1499, 1676, 2325
NsbI	TGCGCA	1 cut(s)	3020
NsiI	ATGCAT	2 cut(s)	1717, 2826
NspI	RCATGY	4 cut(s)	886, 1282, 1876, 2683
NspV	TTCGAA	2 cut(s)	1138, 1831
PagI	TCATGA	1 cut(s)	2344
PciI	ACATGT	1 cut(s)	1872
PciSI	GCTCTTC	2 cut(s)	465, 1878
PctI	GAATGC	1 cut(s)	2102
PdmI	GAANNNNTTC	3 cut(s)	354, 909, 1554
PfeI	GAWTC	5 cut(s)	289, 1523, 1649, 2793, 3099
PflMI	CCANNNNNTGG	4 cut(s)	415, 1816, 1907, 2461
PscI	ACATGT	1 cut(s)	1872
PshBI	ATTAAT	3 cut(s)	188, 828, 2994
Psp124BI	GAGCTC	1 cut(s)	1609
Psp1406I	AACGTT	1 cut(s)	2333
Psp6I	CCWGG	4 cut(s)	539, 641, 1878, 2727
PspGI	CCWGG	4 cut(s)	539, 641, 1878, 2727
PspN4I	GGNNCC	2 cut(s)	388, 1780
PspPI	GGNCC	1 cut(s)	2653
PstI	CTGCAG	1 cut(s)	925
PstNI	CAGNNNCTG	3 cut(s)	580, 1040, 1973
PsuI	RGATCY	2 cut(s)	386, 1772
PvuII	CAGCTG	3 cut(s)	236, 680, 1037
RsaI	GTAC	9 cut(s)	584, 606, 1125, 1768, 1808, 1877, 2164, 3217, 3263
RsaNI	GTAC	9 cut(s)	583, 605, 1124, 1767, 1807, 1876, 2163, 3216, 3262
RseI	CAYNNNNRTG	6 cut(s)	644, 960, 1104, 1614, 2702, 3075
SacI	GAGCTC	1 cut(s)	1609
SapI	GCTCTTC	2 cut(s)	465, 1878
Sau96I	GGNCC	1 cut(s)	2653
ScaI	AGTACT	1 cut(s)	3217
ScrFI	CCNGG	4 cut(s)	541, 643, 1880, 2729
SduI	GDGCHC	7 cut(s)	957, 1609, 1783, 1872, 1915, 1935, 3186
SfcI	CTRYAG	3 cut(s)	921, 1965, 2277
SfuI	TTCGAA	2 cut(s)	1138, 1831
SmiMI	CAYNNNNRTG	6 cut(s)	644, 960, 1104, 1614, 2702, 3075
SmlI	CTYRAG	6 cut(s)	205, 592, 1147, 1742, 1889, 3211
SmoI	CTYRAG	6 cut(s)	205, 592, 1147, 1742, 1889, 3211
SpeI	ACTAGT	1 cut(s)	2243
SsiI	CCGC	8 cut(s)	169, 323, 791, 2100, 2129, 2218, 2409, 3189
SspI	AATATT	8 cut(s)	120, 355, 1554, 1726, 2509, 2570, 2581, 3040
SstI	GAGCTC	1 cut(s)	1609
StyD4I	CCNGG	4 cut(s)	539, 641, 1878, 2727
StyI	CCWWGG	5 cut(s)	420, 1226, 1997, 2656, 2940
TaaI	ACNGT	9 cut(s)	893, 910, 1544, 2118, 2325, 2356, 2418, 2621, 2849
TaiI	ACGT	1 cut(s)	2336
TaqI	TCGA	7 cut(s)	306, 685, 999, 1138, 1831, 2338, 2534
TatI	WGTACW	3 cut(s)	582, 3215, 3261
TauI	GCSGC	2 cut(s)	325, 2412
TfiI	GAWTC	5 cut(s)	289, 1523, 1649, 2793, 3099
TseFI	GTSAC	5 cut(s)	558, 1395, 1499, 1676, 2325
Tsp45I	GTSAC	5 cut(s)	558, 1395, 1499, 1676, 2325
TspGWI	ACGGA	1 cut(s)	2044
Van91I	CCANNNNNTGG	4 cut(s)	415, 1816, 1907, 2461
Vha464I	CTTAAG	2 cut(s)	592, 3211
VspI	ATTAAT	3 cut(s)	188, 828, 2994
XapI	RAATTY	7 cut(s)	149, 458, 876, 936, 1043, 1264, 2945
XbaI	TCTAGA	2 cut(s)	1513, 2740
XceI	RCATGY	4 cut(s)	886, 1282, 1876, 2683
XmiI	GTMKAC	1 cut(s)	2613
XmnI	GAANNNNTTC	3 cut(s)	354, 909, 1554
ZrmI	AGTACT	1 cut(s)	3217
Zsp2I	ATGCAT	2 cut(s)	1717, 2826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.