Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014789

Physical Location & Seq

Genomic Coordinates Reverse (-)

27079345 .. 27084057

Gene Structure 4713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGATCATCCCTTTGCTCATTCAGAAATTCTCAGTTGAAGAGCAAGCTTCATTAGTCTGGAAGCTTTTGAGCAGCATCCCCACGAATATAGTGGCTAAACTCATTCCCTGGCTAGCGTCCTCCTTGTCACTTGATGAATGTCAGCATCTGTACAAGTGCTTAAGTATGATAGTACCAGCCGAGAAGCTTCTCCAAGAGGTCATTTTCACCTGGATGGAAGGGAAAGACAATTGTGCTGGCATGACAGCTGATCGAAAAGATGATACAAGTTGTGCATATGAGTTCAATGGGGTGTATCCAATAGATGATATGTTGCTTTGGCATCATGCTATTGAGACAGAGTTGAATGAAACACTTGCGGAAGAGAAGAAGATGTCTATTTCTGGAGATGTTATTAATTATGATTTACTGGATTTCTATGACAGGCTGCAATTTATTGCTGAAATTTGCATGTTTCACAGTATTGCTGAGGAAACGGTTCTATATCCTGCAGTGTATGGAGAAATTTCAATTTTCCATGAGCACAGGAATGAAGTAAATCTAACCAATGAGTTTAGGTATTTGCTCGAAAGTTTAAAAAGCGCATCAACAATTCCTTCCACAGCTGCTGAATTTCATTCAAAGATATGCTCCCGTGCTGATCAAATAATGAAAACTTTAAAGGCGCATTTCCATGATGAGGAAGTTAAGGTACTTCCACTTGTTCGAAAGCACTTGAGCATTAAAAGACAACAGGAACTTCTGCATCAGAGCTTGTGTGTGATGCCCTTGAAACTAATTGAGCGTGTCTTGCCATGGCTGGTAAAGTCGTTGACTGCAAATGAAGCCCAGAATTTTGTCAATAACATGCAGTTGGCAGCTCCAGCATCAGATATCGCACTGGTGCAGCTCTTTTGTGGTTGGGCTAGTAAGGCTTCTAATGACTGCTTATGCTCATCTAGTTCCTTGCATATCAACTCTATGTCACCATCACATTCAGTTTGTGAAAAATCCAATAGCTGTTCTACCACTGGAATACCTGCACAACCAATAGATGTTGTTTTTAAAGTTCATAAGGCCATACGCCGTGACTTGGAATATCTAGACACTGAATCTGAAAGGCTTAGTAACTGTGATGAAATATTTCTTCAGCAGTTCATTGAAAGTTTCTGTTTGTTATGGGGCTTATATAGAGCTCATAGTAATGCAGAGGATTTTGTATTGTATCCGGCAATGGAATCCAGAGACGCACTTCAAAATGTAAGTCACTCCTACACACTTGATCATAAGCAAGAGGAAGATGCATTTGAAAATATTGCAGGTGTTCTTCTTGAGCTTTCTCACCTTCACAGAGGTACAAGATCTGGTGCCCCCATAAGTGAATGTGTGGGAAAGTACTATGAGCTGGCAAACAAGCTTCGAATAATGTTCATGTCGCTAAGAATGATGGTAGATGAGCACATGTACCGGGAAGAGCTTGAGCTGTGGCCATTATTTGGAGCACACTTCTCTGTGGAGGAGCAAAACAAAATGATCGGTTTCATACTGGGGACTACAGGTGCTGAAGTTCTCCAATCTATGTTACCATGGGTTACTTCTGCACTTACTGAGGATGAACGGAGTAAAATGATGGATACCTTCAAGAATGTTACAAAAAATACTATGTTCAAGGAGTGGCTTAGTGAATGCGGGAAAGGAGGCTCACTGTCAACTCTACAGCCTAAACCGGAAACTAGCATTTTCATAAAAGGTACTGGATTTGAAGAAAGCCATCACCAAATTTATCATACTTTCAACTCTCATACGCGGAATAACTTGAAGCATCAAATGACTAGTTACTGGATTGCTGCTCAGCAGAGTTTAACTATAGCAATAGCAGTGGATAGTTCAAATAGTGAACAGTTAGGGGGGCTGTCACCAACGTTTCGAGATCATGAGAAAACAGTGTATGGCTGCCAGCATTACAAGAGAAACTGCAAACTCCTAGCTGCTTGCTGCGGCAAACTGTTCACTTGTAGATTTTGCCATGACATTATGAGCGACCACCCAATGGATAGGAAAGCAACATCCAAAATGATGTGTATGAGCTGTCTTAATATTCAGCCAGTTGGATCAGTATGCTCGACAGCTTGTTGCAATGGATTTCCAATGGCAAAATATTATTGTAATATTTGCAACCTCTTTGATGATGACAGGAATGTCTACCACTGTCCATTTTGCAACTTATGCCGAGTAGGGAAGGGCCTTGGCATTGATTATTTTCACTGCATGTCGTGCAATTGTTGCATGGGGATGGCTTCGGTGAACCACAAGTGCCAGGAGAAATGTCTAGAAACCAACTGCCCTGTCTGCAATGAGTTCTTATTCACATCAAGTTCAAGAATCAAAGCTTTACCATGTGGCCATTGTATGCATTTAGCTTGCTTCAAGGTTTCTATTTCTCTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

809

Amino Acids

91.78

Weight (kDa)

5.92

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	343 - 491	7.2e-06	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	645 - 713	1.3e-17	CHY zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014789)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05930 FvH4_7g05930 FvH4_7g05930
malus_domestica	MD07G1068200.v1.1
prunus_persica	Prupe.2G085600_v2.0.a1
pyrus_communis	pycom07g05230
rosa_chinensis	RchiOBHm_Chr1g0333131
rosa_laevigata	RLG00000029624
rosa_multiflora	Rmu_sc0007432.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317770
rosa_rugosa	Rorug01G0107300 Rorug01G0107400
rosa_samantha	Rh1AG130600 Rh1BG099700 Rh1CG124400 Rh1DG135900
rosa_wichuraiana	Rw1G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1289
AasI	GACNNNNNNGTC	1 cut(s)	2177
Acc36I	ACCTGC	2 cut(s)	1027, 1289
AccB1I	GGYRCC	1 cut(s)	1346
AccB7I	CCANNNNNTGG	2 cut(s)	1475, 2029
AccI	GTMKAC	1 cut(s)	2181
AccII	CGCG	1 cut(s)	1786
AciI	CCGC	4 cut(s)	359, 1668, 1786, 1977
AclI	AACGTT	1 cut(s)	1901
AclWI	GGATC	1 cut(s)	2098
AcoI	YGGCCR	2 cut(s)	1466, 2380
AcsI	RAATTY	6 cut(s)	26, 444, 504, 611, 832, 1758
AcuI	CTGAAG	2 cut(s)	1112, 1563
AfaI	GTAC	7 cut(s)	152, 174, 693, 1336, 1376, 1445, 1732
AfiI	CCNNNNNNNGG	4 cut(s)	679, 1072, 1475, 2029
AflII	CTTAAG	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	1440
AhlI	ACTAGT	1 cut(s)	1811
AjnI	CCWGG	3 cut(s)	107, 209, 2295
Alw21I	GWGCWC	4 cut(s)	525, 1177, 1440, 1483
Alw26I	GTCTC	2 cut(s)	329, 1218
AlwI	GGATC	1 cut(s)	2098
AlwNI	CAGNNNCTG	3 cut(s)	148, 608, 1541
AoxI	GGCC	4 cut(s)	1056, 1466, 2221, 2380
ApeKI	GCWGC	9 cut(s)	72, 427, 605, 857, 886, 1826, 1932, 1967, 1974
ApoI	RAATTY	6 cut(s)	26, 444, 504, 611, 832, 1758
ArsI	GACNNNNNNTTYG	2 cut(s)	1228, 1260
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	2 cut(s)	477, 1122
AspLEI	GCGC	2 cut(s)	584, 667
AspS9I	GGNCC	1 cut(s)	2221
AsuC2I	CCSGG	1 cut(s)	1448
AsuHPI	GGTGA	6 cut(s)	199, 957, 1313, 1745, 1887, 2293
AsuII	TTCGAA	2 cut(s)	706, 1399
AsuNHI	GCTAGC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	1351
BalI	TGGCCA	2 cut(s)	1468, 2382
BanI	GGYRCC	1 cut(s)	1346
BanII	GRGCYC	1 cut(s)	1177
BarI	GAAGNNNNNNTAC	2 cut(s)	675, 707
Bbv12I	GWGCWC	4 cut(s)	525, 1177, 1440, 1483
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	9 cut(s)	84, 414, 592, 869, 898, 1813, 1919, 1954, 1961
BccI	CCATC	6 cut(s)	208, 976, 1420, 1603, 1758, 2266
BceAI	ACGGC	1 cut(s)	1050
BciT130I	CCWGG	3 cut(s)	109, 211, 2297
BciVI	GTATCC	3 cut(s)	306, 1215, 1606
BclI	TGATCA	3 cut(s)	3, 640, 1261
BcnI	CCSGG	1 cut(s)	1448
BcoDI	GTCTC	2 cut(s)	329, 1218
BcuI	ACTAGT	1 cut(s)	1811
BfaI	CTAG	8 cut(s)	113, 906, 939, 1082, 1713, 1812, 1964, 2309
BfmI	CTRYAG	4 cut(s)	489, 1533, 1694, 1845
BfrI	CTTAAG	1 cut(s)	160
BfuAI	ACCTGC	2 cut(s)	1027, 1289
BfuI	GTATCC	3 cut(s)	306, 1215, 1606
BglII	AGATCT	1 cut(s)	1340
BlpI	GCTNAGC	1 cut(s)	1830
BmcAI	AGTACT	1 cut(s)	1376
Bme1390I	CCNGG	4 cut(s)	109, 211, 1448, 2297
BmgT120I	GGNCC	1 cut(s)	2221
BmiI	GGNNCC	1 cut(s)	1348
BmrFI	CCNGG	4 cut(s)	109, 211, 1448, 2297
BmrI	ACTGGG	1 cut(s)	1535
BmsI	GCATC	9 cut(s)	84, 154, 331, 593, 753, 754, 875, 1270, 1810
BmtI	GCTAGC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	1535
BpmI	CTGGAG	2 cut(s)	405, 846
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	1830
Bpu14I	TTCGAA	2 cut(s)	706, 1399
BpuEI	CTTGAG	3 cut(s)	736, 1331, 1478
BpuMI	CCSGG	1 cut(s)	1448
BsaJI	CCNNGG	4 cut(s)	107, 794, 1565, 2224
BsaWI	WCCGGW	1 cut(s)	1705
Bsc4I	CCNNNNNNNGG	4 cut(s)	679, 1072, 1475, 2029
Bse1I	ACTGG	7 cut(s)	414, 885, 1015, 1530, 1738, 1823, 2084
Bse3DI	GCAATG	3 cut(s)	1218, 2122, 2338
BseBI	CCWGG	3 cut(s)	109, 211, 2297
BseDI	CCNNGG	4 cut(s)	107, 794, 1565, 2224
BseGI	GGATG	6 cut(s)	6, 75, 219, 1597, 2045, 2277
BseLI	CCNNNNNNNGG	4 cut(s)	679, 1072, 1475, 2029
BseMI	GCAATG	3 cut(s)	1218, 2122, 2338
BseMII	CTCAG	4 cut(s)	45, 459, 1578, 1844
BseNI	ACTGG	7 cut(s)	414, 885, 1015, 1530, 1738, 1823, 2084
BseRI	GAGGAG	1 cut(s)	1511
BseSI	GKGCMC	1 cut(s)	1351
BseXI	GCAGC	9 cut(s)	84, 414, 592, 869, 898, 1813, 1919, 1954, 1961
BsgI	GTGCAG	3 cut(s)	905, 1005, 1563
Bsh1236I	CGCG	1 cut(s)	1786
BshFI	GGCC	4 cut(s)	1058, 1468, 2223, 2382
BshNI	GGYRCC	1 cut(s)	1346
BsiHKAI	GWGCWC	4 cut(s)	525, 1177, 1440, 1483
BsiSI	CCGG	3 cut(s)	1208, 1447, 1706
BslFI	GGGAC	1 cut(s)	1543
BslI	CCNNNNNNNGG	4 cut(s)	679, 1072, 1475, 2029
BsmAI	GTCTC	2 cut(s)	329, 1218
BsmBI	CGTCTC	1 cut(s)	1218
BsmFI	GGGAC	1 cut(s)	1543
BsmI	GAATGC	1 cut(s)	1670
BsnI	GGCC	4 cut(s)	1058, 1468, 2223, 2382
Bsp119I	TTCGAA	2 cut(s)	706, 1399
Bsp1286I	GDGCHC	5 cut(s)	525, 1177, 1351, 1440, 1483
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
Bsp1720I	GCTNAGC	1 cut(s)	1830
Bsp19I	CCATGG	2 cut(s)	794, 1565
BspACI	CCGC	4 cut(s)	359, 1668, 1786, 1977
BspANI	GGCC	4 cut(s)	1058, 1468, 2223, 2382
BspCNI	CTCAG	4 cut(s)	44, 460, 1579, 1843
BspFNI	CGCG	1 cut(s)	1786
BspHI	TCATGA	1 cut(s)	1912
BspLI	GGNNCC	1 cut(s)	1348
BspMAI	CTGCAG	1 cut(s)	493
BspMI	ACCTGC	2 cut(s)	1027, 1289
BspOI	GCTAGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	2098
BspQI	GCTCTTC	2 cut(s)	33, 1446
BspT104I	TTCGAA	2 cut(s)	706, 1399
BspT107I	GGYRCC	1 cut(s)	1346
BspTI	CTTAAG	1 cut(s)	160
BsrDI	GCAATG	3 cut(s)	1218, 2122, 2338
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	7 cut(s)	414, 885, 1015, 1530, 1738, 1823, 2084
BssECI	CCNNGG	4 cut(s)	107, 794, 1565, 2224
BssMI	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
BssT1I	CCWWGG	3 cut(s)	794, 1565, 2224
Bst2UI	CCWGG	3 cut(s)	109, 211, 2297
Bst4CI	ACNGT	8 cut(s)	461, 478, 1112, 1686, 1881, 1924, 1986, 2189
Bst6I	CTCTTC	3 cut(s)	33, 357, 1446
BstAFI	CTTAAG	1 cut(s)	160
BstAPI	GCANNNNNTGC	3 cut(s)	2205, 2253, 2262
BstAUI	TGTACA	1 cut(s)	150
BstBI	TTCGAA	2 cut(s)	706, 1399
BstC8I	GCNNGC	7 cut(s)	45, 114, 238, 1386, 1937, 1972, 2401
BstDEI	CTNAG	7 cut(s)	31, 468, 1103, 1418, 1587, 1658, 1830
BstDSI	CCRYGG	2 cut(s)	794, 1565
BstF5I	GGATG	6 cut(s)	6, 75, 219, 1597, 2045, 2277
BstFNI	CGCG	1 cut(s)	1786
BstHHI	GCGC	2 cut(s)	584, 667
BstKTI	GATC	8 cut(s)	6, 253, 643, 1264, 1343, 1515, 1912, 2093
BstMAI	GTCTC	2 cut(s)	329, 1218
BstMBI	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
BstMWI	GCNNNNNNNGC	8 cut(s)	790, 824, 863, 911, 2205, 2253, 2262, 2328
BstNI	CCWGG	3 cut(s)	109, 211, 2297
BstNSI	RCATGY	4 cut(s)	454, 850, 1444, 2251
BstSCI	CCNGG	4 cut(s)	107, 209, 1446, 2295
BstSFI	CTRYAG	4 cut(s)	489, 1533, 1694, 1845
BstSLI	GKGCMC	1 cut(s)	1351
BstUI	CGCG	1 cut(s)	1786
BstV1I	GCAGC	9 cut(s)	84, 414, 592, 869, 898, 1813, 1919, 1954, 1961
BstX2I	RGATCY	1 cut(s)	1340
BstYI	RGATCY	1 cut(s)	1340
BsuI	GTATCC	3 cut(s)	306, 1215, 1606
BsuRI	GGCC	4 cut(s)	1058, 1468, 2223, 2382
BtgI	CCRYGG	2 cut(s)	794, 1565
BtsCI	GGATG	6 cut(s)	6, 75, 219, 1597, 2045, 2277
BtsI	GCAGTG	3 cut(s)	498, 1863, 2242
BtsIMutI	CAGTG	9 cut(s)	498, 878, 1008, 1086, 1682, 1863, 1929, 2185, 2242
BveI	ACCTGC	2 cut(s)	1027, 1289
Cac8I	GCNNGC	7 cut(s)	45, 114, 238, 1386, 1937, 1972, 2401
CaiI	CAGNNNCTG	3 cut(s)	148, 608, 1541
CciI	TCATGA	1 cut(s)	1912
CfoI	GCGC	2 cut(s)	584, 667
Cfr13I	GGNCC	1 cut(s)	2221
CseI	GACGC	2 cut(s)	105, 1235
Csp6I	GTAC	7 cut(s)	151, 173, 692, 1335, 1375, 1444, 1731
CspCI	CAANNNNNGTGG	2 cut(s)	1839, 1874
CviQI	GTAC	7 cut(s)	151, 173, 692, 1335, 1375, 1444, 1731
DdeI	CTNAG	7 cut(s)	31, 468, 1103, 1418, 1587, 1658, 1830
DpnI	GATC	8 cut(s)	5, 252, 642, 1263, 1342, 1514, 1911, 2092
DpnII	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
DraI	TTTAAA	3 cut(s)	576, 660, 1045
DrdI	GACNNNNNNGTC	1 cut(s)	2177
DseDI	GACNNNNNNGTC	1 cut(s)	2177
EaeI	YGGCCR	2 cut(s)	1466, 2380
Eam1104I	CTCTTC	3 cut(s)	33, 357, 1446
EarI	CTCTTC	3 cut(s)	33, 357, 1446
Ecl136II	GAGCTC	1 cut(s)	1175
Eco130I	CCWWGG	3 cut(s)	794, 1565, 2224
Eco24I	GRGCYC	1 cut(s)	1177
Eco32I	GATATC	1 cut(s)	874
Eco53kI	GAGCTC	1 cut(s)	1175
Eco57I	CTGAAG	2 cut(s)	1112, 1563
EcoICRI	GAGCTC	1 cut(s)	1175
EcoO109I	RGGNCCY	1 cut(s)	2221
EcoRII	CCWGG	3 cut(s)	107, 209, 2295
EcoRV	GATATC	1 cut(s)	874
EcoT14I	CCWWGG	3 cut(s)	794, 1565, 2224
EcoT22I	ATGCAT	2 cut(s)	1285, 2394
EcoT38I	GRGCYC	1 cut(s)	1177
ErhI	CCWWGG	3 cut(s)	794, 1565, 2224
Esp3I	CGTCTC	1 cut(s)	1218
FaqI	GGGAC	1 cut(s)	1543
FauI	CCCGC	1 cut(s)	1661
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	3 cut(s)	3, 640, 1261
FblI	GTMKAC	1 cut(s)	2181
FokI	GGATG	5 cut(s)	62, 226, 1604, 2032, 2284
FriOI	GRGCYC	1 cut(s)	1177
FspBI	CTAG	8 cut(s)	113, 906, 939, 1082, 1713, 1812, 1964, 2309
GlaI	GCGC	2 cut(s)	583, 666
GsuI	CTGGAG	2 cut(s)	405, 846
HaeIII	GGCC	4 cut(s)	1058, 1468, 2223, 2382
HapII	CCGG	3 cut(s)	1208, 1447, 1706
HgaI	GACGC	2 cut(s)	105, 1235
HhaI	GCGC	2 cut(s)	584, 667
Hin6I	GCGC	2 cut(s)	582, 665
HinP1I	GCGC	2 cut(s)	582, 665
HincII	GTYRAC	2 cut(s)	813, 1689
HindII	GTYRAC	2 cut(s)	813, 1689
HindIII	AAGCTT	5 cut(s)	45, 62, 185, 1394, 2367
HinfI	GANTC	3 cut(s)	1091, 1217, 2361
HpaII	CCGG	3 cut(s)	1208, 1447, 1706
HphI	GGTGA	6 cut(s)	199, 957, 1313, 1745, 1887, 2293
Hpy166II	GTNNAC	6 cut(s)	813, 1689, 1877, 1989, 2182, 2284
Hpy188I	TCNGA	4 cut(s)	24, 750, 871, 1096
Hpy8I	GTNNAC	6 cut(s)	813, 1689, 1877, 1989, 2182, 2284
HpyAV	CCTTC	5 cut(s)	212, 606, 1334, 1627, 2212
HpyCH4III	ACNGT	8 cut(s)	461, 478, 1112, 1686, 1881, 1924, 1986, 2189
HpyCH4IV	ACGT	1 cut(s)	1901
HpyF10VI	GCNNNNNNNGC	8 cut(s)	790, 824, 863, 911, 2205, 2253, 2262, 2328
HpyF3I	CTNAG	7 cut(s)	31, 468, 1103, 1418, 1587, 1658, 1830
HpySE526I	ACGT	1 cut(s)	1901
HspAI	GCGC	2 cut(s)	582, 665
Ksp22I	TGATCA	3 cut(s)	3, 640, 1261
Kzo9I	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
LguI	GCTCTTC	2 cut(s)	33, 1446
LmnI	GCTCC	4 cut(s)	635, 865, 1478, 1498
Lsp1109I	GCAGC	9 cut(s)	84, 414, 592, 869, 898, 1813, 1919, 1954, 1961
LweI	GCATC	9 cut(s)	84, 154, 331, 593, 753, 754, 875, 1270, 1810
MaeI	CTAG	8 cut(s)	113, 906, 939, 1082, 1713, 1812, 1964, 2309
MaeII	ACGT	1 cut(s)	1901
MalI	GATC	8 cut(s)	5, 252, 642, 1263, 1342, 1514, 1911, 2092
MboI	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
MboII	GAAGA	9 cut(s)	50, 374, 379, 382, 1118, 1289, 1298, 1463, 1754
MfeI	CAATTG	2 cut(s)	229, 2257
MflI	RGATCY	1 cut(s)	1340
MhlI	GDGCHC	5 cut(s)	525, 1177, 1351, 1440, 1483
MlsI	TGGCCA	2 cut(s)	1468, 2382
MluNI	TGGCCA	2 cut(s)	1468, 2382
MmeI	TCCRAC	1 cut(s)	2068
Mox20I	TGGCCA	2 cut(s)	1468, 2382
Mph1103I	ATGCAT	2 cut(s)	1285, 2394
MroXI	GAANNNNTTC	2 cut(s)	477, 1122
MscI	TGGCCA	2 cut(s)	1468, 2382
MseI	TTAA	9 cut(s)	161, 396, 575, 659, 687, 723, 1044, 1841, 2073
MslI	CAYNNNNRTG	5 cut(s)	212, 528, 672, 1182, 2270
Msp20I	TGGCCA	2 cut(s)	1468, 2382
MspA1I	CMGCKG	2 cut(s)	248, 605
MspCI	CTTAAG	1 cut(s)	160
MspI	CCGG	3 cut(s)	1208, 1447, 1706
MspR9I	CCNGG	4 cut(s)	109, 211, 1448, 2297
MunI	CAATTG	2 cut(s)	229, 2257
Mva1269I	GAATGC	1 cut(s)	1670
MvaI	CCWGG	3 cut(s)	109, 211, 2297
MvnI	CGCG	1 cut(s)	1786
MwoI	GCNNNNNNNGC	8 cut(s)	790, 824, 863, 911, 2205, 2253, 2262, 2328
NciI	CCSGG	1 cut(s)	1448
NcoI	CCATGG	2 cut(s)	794, 1565
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
NheI	GCTAGC	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	1348
NmeAIII	GCCGAG	2 cut(s)	205, 2234
NmuCI	GTSAC	5 cut(s)	126, 963, 1067, 1244, 1893
NsiI	ATGCAT	2 cut(s)	1285, 2394
NspI	RCATGY	4 cut(s)	454, 850, 1444, 2251
NspV	TTCGAA	2 cut(s)	706, 1399
PagI	TCATGA	1 cut(s)	1912
PaqCI	CACCTGC	1 cut(s)	1289
PciI	ACATGT	1 cut(s)	1440
PciSI	GCTCTTC	2 cut(s)	33, 1446
PctI	GAATGC	1 cut(s)	1670
PdmI	GAANNNNTTC	2 cut(s)	477, 1122
PfeI	GAWTC	3 cut(s)	1091, 1217, 2361
PflMI	CCANNNNNTGG	2 cut(s)	1475, 2029
PscI	ACATGT	1 cut(s)	1440
PshBI	ATTAAT	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	1177
Psp1406I	AACGTT	1 cut(s)	1901
Psp6I	CCWGG	3 cut(s)	107, 209, 2295
PspGI	CCWGG	3 cut(s)	107, 209, 2295
PspN4I	GGNNCC	1 cut(s)	1348
PspPI	GGNCC	1 cut(s)	2221
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	3 cut(s)	148, 608, 1541
PsuI	RGATCY	1 cut(s)	1340
PvuII	CAGCTG	2 cut(s)	248, 605
RsaI	GTAC	7 cut(s)	152, 174, 693, 1336, 1376, 1445, 1732
RsaNI	GTAC	7 cut(s)	151, 173, 692, 1335, 1375, 1444, 1731
RseI	CAYNNNNRTG	5 cut(s)	212, 528, 672, 1182, 2270
SacI	GAGCTC	1 cut(s)	1177
SapI	GCTCTTC	2 cut(s)	33, 1446
SaqAI	TTAA	9 cut(s)	161, 396, 575, 659, 687, 723, 1044, 1841, 2073
Sau3AI	GATC	8 cut(s)	3, 250, 640, 1261, 1340, 1512, 1909, 2090
Sau96I	GGNCC	1 cut(s)	2221
ScaI	AGTACT	1 cut(s)	1376
ScrFI	CCNGG	4 cut(s)	109, 211, 1448, 2297
SduI	GDGCHC	5 cut(s)	525, 1177, 1351, 1440, 1483
SfaNI	GCATC	9 cut(s)	84, 154, 331, 593, 753, 754, 875, 1270, 1810
SfcI	CTRYAG	4 cut(s)	489, 1533, 1694, 1845
SfuI	TTCGAA	2 cut(s)	706, 1399
SmiMI	CAYNNNNRTG	5 cut(s)	212, 528, 672, 1182, 2270
SmlI	CTYRAG	4 cut(s)	160, 715, 1310, 1457
SmoI	CTYRAG	4 cut(s)	160, 715, 1310, 1457
SpeI	ACTAGT	1 cut(s)	1811
SsiI	CCGC	4 cut(s)	359, 1668, 1786, 1977
SspI	AATATT	5 cut(s)	1122, 1294, 2077, 2138, 2149
SspMI	CTAG	8 cut(s)	113, 906, 939, 1082, 1713, 1812, 1964, 2309
SstI	GAGCTC	1 cut(s)	1177
StyD4I	CCNGG	4 cut(s)	107, 209, 1446, 2295
StyI	CCWWGG	3 cut(s)	794, 1565, 2224
TaaI	ACNGT	8 cut(s)	461, 478, 1112, 1686, 1881, 1924, 1986, 2189
TaiI	ACGT	1 cut(s)	1904
TaqI	TCGA	6 cut(s)	253, 567, 706, 1399, 1906, 2102
TatI	WGTACW	2 cut(s)	150, 1374
TauI	GCSGC	1 cut(s)	1980
TfiI	GAWTC	3 cut(s)	1091, 1217, 2361
Tru1I	TTAA	9 cut(s)	161, 396, 575, 659, 687, 723, 1044, 1841, 2073
Tru9I	TTAA	9 cut(s)	161, 396, 575, 659, 687, 723, 1044, 1841, 2073
TscAI	CASTG	9 cut(s)	498, 885, 1015, 1093, 1689, 1863, 1929, 2192, 2249
TseFI	GTSAC	5 cut(s)	126, 963, 1067, 1244, 1893
TseI	GCWGC	9 cut(s)	72, 427, 605, 857, 886, 1826, 1932, 1967, 1974
Tsp45I	GTSAC	5 cut(s)	126, 963, 1067, 1244, 1893
TspGWI	ACGGA	1 cut(s)	1612
TspRI	CASTG	9 cut(s)	498, 885, 1015, 1093, 1689, 1863, 1929, 2192, 2249
Van91I	CCANNNNNTGG	2 cut(s)	1475, 2029
Vha464I	CTTAAG	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	6 cut(s)	26, 444, 504, 611, 832, 1758
XbaI	TCTAGA	2 cut(s)	1081, 2308
XceI	RCATGY	4 cut(s)	454, 850, 1444, 2251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	2181
XmnI	GAANNNNTTC	2 cut(s)	477, 1122
XspI	CTAG	8 cut(s)	113, 906, 939, 1082, 1713, 1812, 1964, 2309
ZrmI	AGTACT	1 cut(s)	1376
Zsp2I	ATGCAT	2 cut(s)	1285, 2394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.