Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014789

Physical Location & Seq

Genomic Coordinates Reverse (-)

17417039 .. 17426423

Gene Structure 9385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3096 bp

ATGTCTAATGAGCTTGATGTGCTTCACCGATCAACAGTGGGCTATGCCAACGGCCAAAGTGTAGAATTTCGGGCATTTTTTGAGCGCTGCAACTTTCTAAAATTGATTTATGAGAACTACTTAAGTGTTAAAGATGAGGTGATATATGCAGCTGTTGATGCACGGATCAAAAATATAGCAGAAACCTACTTCCTTCAACACCAGAATCAAATACTTGTTTTCGATCATCTGTTTAAGCTGCTAATTTCTAGCATACAAAATGAGGAAAATATTCCAAGCAAGGTGTTGCTGTGCTTTACAGGATCCCTTCAAACAATGTTTAGCCAGTGTATGGCCAAGGAAGAGGAGCAGATCATCCCTTTGCTCATTCAGAAATTCTCAGTTGAAGAGCAAGCTTCATTAGTCTGGAAGCTTTTGAGCAGCATCCCCACGAATATAGTGGCTAAACTCATTCCCTGGCTAGCGTCCTCCTTGTCACTTGATGAATGTCAGCATCTGTACAAGTGCTTAAGTATGATAGTACCAGCCGAGAAGCTTCTCCAAGAGGTCATTTTCACCTGGATGGAAGGGAAAGACAATTGTGCTGGCATGACAGCTGATCGAAAAGATGATACAAGTTGTGCATATGAGTTCAATGGGGTGTATCCAATAGATGATATGTTGCTTTGGCATCATGCTATTGAGACAGAGTTGAATGAAACACTTGCGGAAGAGAAGAAGATGTCTATTTCTGGAGATGTTATTAATTATGATTTACTGGCTTTCTATGACAGGCTGCAATTTATTGCTGAAATTTGCATGTTTCACAGTATTGCTGAGGAAACGGTTCTATATCCTGCAGTGTATGGAGAAATTTCAATTTTCCATGAGCACAGAAATGAAGTAAATCTAACCAATGAGTTTAGGTGTTTGCTCGAAAGTTTAAAAAGCGCATCAACAATTCCTTCCAGAGCTGCTGAATTTCATTCAAAGATATGCTCCCGTGCTGATCAAATAATGAAAACTTTAAAGGCGCATTTCCATGATGAGGAAGTTAAGGTACTTCCACTTGTTCGAAAGCACTTGAGCATTAAAAGACAACAGGAACTTCTGCATCAGAGCTTGTGTGTGATGCCCTTGAAACTAATTGAGCGTGTCTTGCCATGGCTGATAAAGTCATTGACTGCAAATGAAGCCCAGAATTTTGTCAATAACATGAAGTTGGCAGCTCCAGCATCAGATATCGCACTGGTGCAGCTCTTTTGTGGTTGGGCTAGCAAGGCTTCTAATGACTGCTTATGCTCATCTAGTTCCTTGCATATCAACTCTATGTCACCATCACATTCAGTTTGTGAAAAATCCAATAGCTGTTCTACCACTGGAATACCTGCACAACCAATAGATGTTGTTTTTAAAGTTCATAAGGCCATACGCCGTGACTTGGAATATCTAGACACTGAATCTGAAAGGATTAGTAACTGTGATGAAATATTTCTTCAGCAGTTCATTGAAAGTTTCTGTTTGTTATGGGGCTTATATAGAGCTCATAGTAATGCAGAGGATTTTGTATTGTATCCAGCAATGGAATCCAGAGACGCACTTCAAAATGTAAGTCACTCCTACACACTTGATCATACGCAAGAGGAAGATGCATTTGAAAATATTTCAGGTGTTCTTCTTGAGCTTTCTCACCTTCACAGAGGTACAAGATCTGGTGCCCCCATTAGTGAATGTGTGGGAAAGTACTATGAGCTGGCAAACAAGCTTCGAATAATGTTCATGTCGCTAAGAATGATGGTAGATGAGCACATGTACCGGGAAGAGCTTGAGCTGTGGCCATTATTTGGAGCACACTTCTCTGTGGAGGAGCAAAACAAAATGATCGGTTTCATACTGGGGACTACAGGTGCTGAAGTTCTCCAATCTATGTTACCATGGGTTACTTCTGCACTTACTGAGGATGAACAGAGTAAAATGATGGATACCTTCAAGAATGTTACAAAAAATACAATGTTCAAGGAGTGGCTTAGTGAATGCAGGAAAGGAAGCTCACTGTCAACTCTACCGCCTAAACCGGAAACTACCATTTTCAGAAAAGGTACTGGATTTGAAGAAAGCCATCACCAAATTGATCATACTTTCAACTCTCATACGCGGAATAACTTGAAGCATCAAATGACTAGTTACTGGATTGCTGCTCAGCAGAGTTTAACTATAGCAATAGCAGTGGATAGTTCAAATAGTGAACAGTTAGGGGGACTGTCACCAACGTTTCGAGATCATGAGAAAACAGTGTATGGCTGCCAGCATTACAAGAGAAACTGCAAACTCCTAGCTGCTTGCTGCGGCAAACTGTTCACTTGTAGATTTTGCCATGACATTATGAGCGACCACCCAATGGATAGGAAAGCAACATCCAAAATGATGTGTATGAGCTGTCTTAATATTCAGCCAGTTGGGTCAGTATGCTCGACAGCTTCTTGCAATGGATTTCCAATGGCAAAATATTATTGTAATATTTGCAACCTCTTTGATGATGACAGGAATGTCTATCACTGTCCATTTTGCAACTTATGCCGAGTAGGGAAGGGCCTTGGCATTGATTATTTTCACTGCATGTCGTGCAATTGTTGCATGGGGATGGCTTCAGTGAACCACAAGTGCCAGGAGAAATGTCTAGAAACCAACTGCCCTGTCTGCAATGAGTTCTTATTCACATCAAGTTCAAGAATCAAAGCTTTACCATGTGGCCATTGTATGCATTTAGCTTGCTTCAAGACTTGCACTCAGAGCAACAGTCAATACACTTGTCCAGTTTGCAGCAAATCTTCAGGAGCTACGATGATGACATCAACTCAATCCGCACTACTTGTGGATGGTGATGAGACCATGGAATTTTATAGCTATGACCAAAAAACTGAAATGACTTCATGCACTGATATTAATCCTGAAGGGGGATTTTTCATGCGCACGAGCTTCTGGGTAAATATTTTATATCAGCTTGTCTTATGGTTTGAACACCTTAATGGAAGACTAGTTGTACCAAGATTCCTGCAAAGATTAAAAAGGGGATTGGAGAATGGAGTAGCAGGACAGAAGGCTAAAGAGAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1031

Amino Acids

117.37

Weight (kDa)

5.91

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	761 - 829	4.3e-18	CHY zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014789)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05930 FvH4_7g05930 FvH4_7g05930
malus_domestica	MD07G1068200.v1.1
prunus_persica	Prupe.2G085600_v2.0.a1
pyrus_communis	pycom07g05230
rosa_chinensis	RchiOBHm_Chr1g0333131
rosa_laevigata	RLG00000029624
rosa_multiflora	Rmu_sc0007432.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317770
rosa_rugosa	Rorug01G0107300 Rorug01G0107400
rosa_samantha	Rh1AG130600 Rh1BG099700 Rh1CG124400 Rh1DG135900
rosa_wichuraiana	Rw1G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2525
Acc16I	TGCGCA	1 cut(s)	2948
Acc36I	ACCTGC	1 cut(s)	1375
AccB1I	GGYRCC	1 cut(s)	1694
AccB7I	CCANNNNNTGG	3 cut(s)	331, 1823, 2377
AccII	CGCG	1 cut(s)	2134
AciI	CCGC	5 cut(s)	707, 2045, 2134, 2325, 2841
AclI	AACGTT	1 cut(s)	2249
AclWI	GGATC	3 cut(s)	173, 297, 310
AcoI	YGGCCR	4 cut(s)	52, 333, 1814, 2728
AcsI	RAATTY	7 cut(s)	65, 374, 792, 852, 959, 1180, 2873
AcuI	CTGAAG	5 cut(s)	1460, 1911, 2610, 2793, 2949
AfaI	GTAC	8 cut(s)	500, 522, 1041, 1684, 1724, 1793, 2080, 3021
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	6 cut(s)	331, 1027, 1420, 1823, 2377, 2933
AflII	CTTAAG	2 cut(s)	121, 508
AflIII	ACRYGT	1 cut(s)	1788
AhlI	ACTAGT	2 cut(s)	2159, 3013
AjnI	CCWGG	3 cut(s)	455, 557, 2643
Alw21I	GWGCWC	4 cut(s)	873, 1525, 1788, 1831
Alw26I	GTCTC	4 cut(s)	677, 1566, 2858, 3082
AlwI	GGATC	3 cut(s)	173, 297, 310
AlwNI	CAGNNNCTG	2 cut(s)	496, 1889
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	6 cut(s)	52, 333, 1404, 1814, 2569, 2728
ApoI	RAATTY	7 cut(s)	65, 374, 792, 852, 959, 1180, 2873
ArsI	GACNNNNNNTTYG	2 cut(s)	1576, 1608
AseI	ATTAAT	2 cut(s)	744, 2922
Asp700I	GAANNNNTTC	3 cut(s)	270, 825, 1470
AspLEI	GCGC	4 cut(s)	87, 932, 1015, 2949
AspS9I	GGNCC	1 cut(s)	2569
AsuC2I	CCSGG	1 cut(s)	1796
AsuHPI	GGTGA	8 cut(s)	17, 151, 547, 1305, 1661, 2093, 2235, 2870
AsuII	TTCGAA	2 cut(s)	1054, 1747
AsuNHI	GCTAGC	2 cut(s)	460, 1253
BaeGI	GKGCMC	1 cut(s)	1699
BalI	TGGCCA	3 cut(s)	335, 1816, 2730
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	1694
BanII	GRGCYC	1 cut(s)	1525
BarI	GAAGNNNNNNTAC	2 cut(s)	1023, 1055
BauI	CACGAG	1 cut(s)	2950
BbsI	GAAGAC	1 cut(s)	3016
Bbv12I	GWGCWC	4 cut(s)	873, 1525, 1788, 1831
BbvCI	CCTCAGC	1 cut(s)	816
BccI	CCATC	7 cut(s)	556, 1324, 1768, 1951, 2106, 2614, 2849
BceAI	ACGGC	2 cut(s)	67, 1398
BciT130I	CCWGG	3 cut(s)	457, 559, 2645
BciVI	GTATCC	3 cut(s)	654, 1563, 1954
BclI	TGATCA	3 cut(s)	988, 1609, 2110
BcnI	CCSGG	1 cut(s)	1796
BcoDI	GTCTC	4 cut(s)	677, 1566, 2858, 3082
BcuI	ACTAGT	2 cut(s)	2159, 3013
BfaI	CTAG	9 cut(s)	249, 461, 1254, 1287, 1430, 2160, 2312, 2657, 3014
BfmI	CTRYAG	3 cut(s)	837, 1881, 2193
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	2 cut(s)	121, 508
BfuAI	ACCTGC	1 cut(s)	1375
BfuI	GTATCC	3 cut(s)	654, 1563, 1954
BglII	AGATCT	1 cut(s)	1688
BlpI	GCTNAGC	1 cut(s)	2178
BmcAI	AGTACT	1 cut(s)	1724
Bme1390I	CCNGG	4 cut(s)	457, 559, 1796, 2645
BmgT120I	GGNCC	1 cut(s)	2569
BmiI	GGNNCC	2 cut(s)	304, 1696
BmrFI	CCNGG	4 cut(s)	457, 559, 1796, 2645
BmrI	ACTGGG	1 cut(s)	1883
BmtI	GCTAGC	2 cut(s)	464, 1257
BmuI	ACTGGG	1 cut(s)	1883
BpiI	GAAGAC	1 cut(s)	3016
BpmI	CTGGAG	2 cut(s)	753, 1194
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	2178
Bpu14I	TTCGAA	2 cut(s)	1054, 1747
BpuEI	CTTGAG	3 cut(s)	1084, 1679, 1826
BpuMI	CCSGG	1 cut(s)	1796
BsaBI	GATNNNNATC	1 cut(s)	2922
BsaI	GGTCTC	1 cut(s)	2858
BsaJI	CCNNGG	6 cut(s)	336, 455, 1142, 1913, 2572, 2868
BsaWI	WCCGGW	1 cut(s)	2053
Bsc4I	CCNNNNNNNGG	6 cut(s)	331, 1027, 1420, 1823, 2377, 2933
Bse1I	ACTGG	9 cut(s)	325, 762, 1233, 1363, 1878, 2086, 2171, 2432, 2792
Bse3DI	GCAATG	3 cut(s)	1566, 2470, 2686
Bse8I	GATNNNNATC	1 cut(s)	2922
BseBI	CCWGG	3 cut(s)	457, 559, 2645
BseDI	CCNNGG	6 cut(s)	336, 455, 1142, 1913, 2572, 2868
BseGI	GGATG	7 cut(s)	354, 423, 567, 1945, 2393, 2625, 2860
BseJI	GATNNNNATC	1 cut(s)	2922
BseLI	CCNNNNNNNGG	6 cut(s)	331, 1027, 1420, 1823, 2377, 2933
BseMI	GCAATG	3 cut(s)	1566, 2470, 2686
BseMII	CTCAG	5 cut(s)	393, 807, 1926, 2192, 2780
BseNI	ACTGG	9 cut(s)	325, 762, 1233, 1363, 1878, 2086, 2171, 2432, 2792
BseRI	GAGGAG	2 cut(s)	359, 1859
BseSI	GKGCMC	1 cut(s)	1699
BsgI	GTGCAG	3 cut(s)	1253, 1353, 1911
Bsh1236I	CGCG	1 cut(s)	2134
BshFI	GGCC	6 cut(s)	54, 335, 1406, 1816, 2571, 2730
BshNI	GGYRCC	1 cut(s)	1694
BsiHKAI	GWGCWC	4 cut(s)	873, 1525, 1788, 1831
BsiSI	CCGG	2 cut(s)	1795, 2054
BslFI	GGGAC	2 cut(s)	1891, 2250
BslI	CCNNNNNNNGG	6 cut(s)	331, 1027, 1420, 1823, 2377, 2933
BsmAI	GTCTC	4 cut(s)	677, 1566, 2858, 3082
BsmBI	CGTCTC	1 cut(s)	1566
BsmFI	GGGAC	2 cut(s)	1891, 2250
BsmI	GAATGC	1 cut(s)	2018
BsnI	GGCC	6 cut(s)	54, 335, 1406, 1816, 2571, 2730
Bso31I	GGTCTC	1 cut(s)	2858
Bsp119I	TTCGAA	2 cut(s)	1054, 1747
Bsp1286I	GDGCHC	5 cut(s)	873, 1525, 1699, 1788, 1831
Bsp1407I	TGTACA	1 cut(s)	498
Bsp1720I	GCTNAGC	1 cut(s)	2178
Bsp19I	CCATGG	3 cut(s)	1142, 1913, 2868
BspACI	CCGC	5 cut(s)	707, 2045, 2134, 2325, 2841
BspANI	GGCC	6 cut(s)	54, 335, 1406, 1816, 2571, 2730
BspCNI	CTCAG	5 cut(s)	392, 808, 1927, 2191, 2779
BspFNI	CGCG	1 cut(s)	2134
BspHI	TCATGA	1 cut(s)	2260
BspLI	GGNNCC	2 cut(s)	304, 1696
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	1375
BspOI	GCTAGC	2 cut(s)	464, 1257
BspPI	GGATC	3 cut(s)	173, 297, 310
BspQI	GCTCTTC	2 cut(s)	381, 1794
BspT104I	TTCGAA	2 cut(s)	1054, 1747
BspT107I	GGYRCC	1 cut(s)	1694
BspTI	CTTAAG	2 cut(s)	121, 508
BspTNI	GGTCTC	1 cut(s)	2858
BsrDI	GCAATG	3 cut(s)	1566, 2470, 2686
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	9 cut(s)	325, 762, 1233, 1363, 1878, 2086, 2171, 2432, 2792
BssECI	CCNNGG	6 cut(s)	336, 455, 1142, 1913, 2572, 2868
BssSI	CACGAG	1 cut(s)	2950
BssT1I	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
Bst2BI	CACGAG	1 cut(s)	2950
Bst2UI	CCWGG	3 cut(s)	457, 559, 2645
Bst6I	CTCTTC	4 cut(s)	336, 381, 705, 1794
BstAFI	CTTAAG	2 cut(s)	121, 508
BstAPI	GCANNNNNTGC	3 cut(s)	2553, 2601, 2610
BstAUI	TGTACA	1 cut(s)	498
BstBI	TTCGAA	2 cut(s)	1054, 1747
BstC8I	GCNNGC	8 cut(s)	393, 462, 586, 1255, 1734, 2285, 2320, 2749
BstDEI	CTNAG	7 cut(s)	379, 816, 1766, 1935, 2006, 2178, 2766
BstDSI	CCRYGG	3 cut(s)	1142, 1913, 2868
BstF5I	GGATG	7 cut(s)	354, 423, 567, 1945, 2393, 2625, 2860
BstFNI	CGCG	1 cut(s)	2134
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	4 cut(s)	87, 932, 1015, 2949
BstMAI	GTCTC	4 cut(s)	677, 1566, 2858, 3082
BstNI	CCWGG	3 cut(s)	457, 559, 2645
BstNSI	RCATGY	3 cut(s)	802, 1792, 2599
BstSCI	CCNGG	4 cut(s)	455, 557, 1794, 2643
BstSFI	CTRYAG	3 cut(s)	837, 1881, 2193
BstSLI	GKGCMC	1 cut(s)	1699
BstUI	CGCG	1 cut(s)	2134
BstV2I	GAAGAC	1 cut(s)	3016
BstX2I	RGATCY	2 cut(s)	302, 1688
BstYI	RGATCY	2 cut(s)	302, 1688
BsuI	GTATCC	3 cut(s)	654, 1563, 1954
BsuRI	GGCC	6 cut(s)	54, 335, 1406, 1816, 2571, 2730
BtgI	CCRYGG	3 cut(s)	1142, 1913, 2868
BtsCI	GGATG	7 cut(s)	354, 423, 567, 1945, 2393, 2625, 2860
BtsI	GCAGTG	3 cut(s)	846, 2211, 2590
BveI	ACCTGC	1 cut(s)	1375
Cac8I	GCNNGC	8 cut(s)	393, 462, 586, 1255, 1734, 2285, 2320, 2749
CaiI	CAGNNNCTG	2 cut(s)	496, 1889
CciI	TCATGA	1 cut(s)	2260
CfoI	GCGC	4 cut(s)	87, 932, 1015, 2949
Cfr13I	GGNCC	1 cut(s)	2569
CseI	GACGC	2 cut(s)	453, 1583
Csp6I	GTAC	8 cut(s)	499, 521, 1040, 1683, 1723, 1792, 2079, 3020
CspCI	CAANNNNNGTGG	2 cut(s)	2187, 2222
CviQI	GTAC	8 cut(s)	499, 521, 1040, 1683, 1723, 1792, 2079, 3020
DdeI	CTNAG	7 cut(s)	379, 816, 1766, 1935, 2006, 2178, 2766
DraI	TTTAAA	3 cut(s)	924, 1008, 1393
DrdI	GACNNNNNNGTC	1 cut(s)	2525
DseDI	GACNNNNNNGTC	1 cut(s)	2525
EaeI	YGGCCR	4 cut(s)	52, 333, 1814, 2728
Eam1104I	CTCTTC	4 cut(s)	336, 381, 705, 1794
EarI	CTCTTC	4 cut(s)	336, 381, 705, 1794
Ecl136II	GAGCTC	1 cut(s)	1523
Eco130I	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
Eco24I	GRGCYC	1 cut(s)	1525
Eco31I	GGTCTC	1 cut(s)	2858
Eco32I	GATATC	1 cut(s)	1222
Eco47III	AGCGCT	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	1523
Eco57I	CTGAAG	5 cut(s)	1460, 1911, 2610, 2793, 2949
EcoICRI	GAGCTC	1 cut(s)	1523
EcoO109I	RGGNCCY	1 cut(s)	2569
EcoRII	CCWGG	3 cut(s)	455, 557, 2643
EcoRV	GATATC	1 cut(s)	1222
EcoT14I	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
EcoT22I	ATGCAT	2 cut(s)	1633, 2742
EcoT38I	GRGCYC	1 cut(s)	1525
ErhI	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
Esp3I	CGTCTC	1 cut(s)	1566
FaqI	GGGAC	2 cut(s)	1891, 2250
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	3 cut(s)	988, 1609, 2110
FokI	GGATG	7 cut(s)	341, 410, 574, 1952, 2380, 2632, 2867
FriOI	GRGCYC	1 cut(s)	1525
FspAI	RTGCGCAY	1 cut(s)	2948
FspBI	CTAG	9 cut(s)	249, 461, 1254, 1287, 1430, 2160, 2312, 2657, 3014
FspI	TGCGCA	1 cut(s)	2948
GlaI	GCGC	4 cut(s)	86, 931, 1014, 2948
GsuI	CTGGAG	2 cut(s)	753, 1194
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	6 cut(s)	54, 335, 1406, 1816, 2571, 2730
HapII	CCGG	2 cut(s)	1795, 2054
HgaI	GACGC	2 cut(s)	453, 1583
HhaI	GCGC	4 cut(s)	87, 932, 1015, 2949
Hin6I	GCGC	4 cut(s)	85, 930, 1013, 2947
HinP1I	GCGC	4 cut(s)	85, 930, 1013, 2947
HincII	GTYRAC	1 cut(s)	2037
HindII	GTYRAC	1 cut(s)	2037
HindIII	AAGCTT	5 cut(s)	393, 410, 533, 1742, 2715
HinfI	GANTC	5 cut(s)	205, 1439, 1565, 2709, 3027
HpaII	CCGG	2 cut(s)	1795, 2054
HphI	GGTGA	8 cut(s)	17, 151, 547, 1305, 1661, 2093, 2235, 2870
Hpy166II	GTNNAC	4 cut(s)	2037, 2225, 2337, 2632
Hpy188I	TCNGA	6 cut(s)	372, 1098, 1219, 1444, 2072, 2769
Hpy8I	GTNNAC	4 cut(s)	2037, 2225, 2337, 2632
HpyAV	CCTTC	9 cut(s)	203, 317, 560, 954, 1682, 1975, 2560, 2924, 3070
HpyCH4IV	ACGT	1 cut(s)	2249
HpyF3I	CTNAG	7 cut(s)	379, 816, 1766, 1935, 2006, 2178, 2766
HpySE526I	ACGT	1 cut(s)	2249
HspAI	GCGC	4 cut(s)	85, 930, 1013, 2947
Ksp22I	TGATCA	3 cut(s)	988, 1609, 2110
LguI	GCTCTTC	2 cut(s)	381, 1794
LmnI	GCTCC	6 cut(s)	346, 983, 1213, 1826, 1846, 2813
MaeI	CTAG	9 cut(s)	249, 461, 1254, 1287, 1430, 2160, 2312, 2657, 3014
MaeII	ACGT	1 cut(s)	2249
MfeI	CAATTG	2 cut(s)	577, 2605
MflI	RGATCY	2 cut(s)	302, 1688
MhlI	GDGCHC	5 cut(s)	873, 1525, 1699, 1788, 1831
MlsI	TGGCCA	3 cut(s)	335, 1816, 2730
MluNI	TGGCCA	3 cut(s)	335, 1816, 2730
Mox20I	TGGCCA	3 cut(s)	335, 1816, 2730
Mph1103I	ATGCAT	2 cut(s)	1633, 2742
MroXI	GAANNNNTTC	3 cut(s)	270, 825, 1470
MscI	TGGCCA	3 cut(s)	335, 1816, 2730
MslI	CAYNNNNRTG	6 cut(s)	560, 876, 1020, 1530, 2618, 3003
Msp20I	TGGCCA	3 cut(s)	335, 1816, 2730
MspA1I	CMGCKG	2 cut(s)	152, 596
MspCI	CTTAAG	2 cut(s)	121, 508
MspI	CCGG	2 cut(s)	1795, 2054
MspR9I	CCNGG	4 cut(s)	457, 559, 1796, 2645
MunI	CAATTG	2 cut(s)	577, 2605
Mva1269I	GAATGC	1 cut(s)	2018
MvaI	CCWGG	3 cut(s)	457, 559, 2645
MvnI	CGCG	1 cut(s)	2134
NciI	CCSGG	1 cut(s)	1796
NcoI	CCATGG	3 cut(s)	1142, 1913, 2868
NdeI	CATATG	1 cut(s)	625
NheI	GCTAGC	2 cut(s)	460, 1253
NlaIV	GGNNCC	2 cut(s)	304, 1696
NmeAIII	GCCGAG	2 cut(s)	553, 2582
NmuCI	GTSAC	5 cut(s)	474, 1311, 1415, 1592, 2241
NsbI	TGCGCA	1 cut(s)	2948
NsiI	ATGCAT	2 cut(s)	1633, 2742
NspI	RCATGY	3 cut(s)	802, 1792, 2599
NspV	TTCGAA	2 cut(s)	1054, 1747
PagI	TCATGA	1 cut(s)	2260
PciI	ACATGT	1 cut(s)	1788
PciSI	GCTCTTC	2 cut(s)	381, 1794
PctI	GAATGC	1 cut(s)	2018
PdmI	GAANNNNTTC	3 cut(s)	270, 825, 1470
PfeI	GAWTC	5 cut(s)	205, 1439, 1565, 2709, 3027
PflMI	CCANNNNNTGG	3 cut(s)	331, 1823, 2377
PscI	ACATGT	1 cut(s)	1788
PshBI	ATTAAT	2 cut(s)	744, 2922
Psp124BI	GAGCTC	1 cut(s)	1525
Psp1406I	AACGTT	1 cut(s)	2249
Psp6I	CCWGG	3 cut(s)	455, 557, 2643
PspGI	CCWGG	3 cut(s)	455, 557, 2643
PspN4I	GGNNCC	2 cut(s)	304, 1696
PspPI	GGNCC	1 cut(s)	2569
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	2 cut(s)	496, 1889
PsuI	RGATCY	2 cut(s)	302, 1688
PvuII	CAGCTG	2 cut(s)	152, 596
RsaI	GTAC	8 cut(s)	500, 522, 1041, 1684, 1724, 1793, 2080, 3021
RsaNI	GTAC	8 cut(s)	499, 521, 1040, 1683, 1723, 1792, 2079, 3020
RseI	CAYNNNNRTG	6 cut(s)	560, 876, 1020, 1530, 2618, 3003
SacI	GAGCTC	1 cut(s)	1525
SapI	GCTCTTC	2 cut(s)	381, 1794
Sau96I	GGNCC	1 cut(s)	2569
ScaI	AGTACT	1 cut(s)	1724
ScrFI	CCNGG	4 cut(s)	457, 559, 1796, 2645
SduI	GDGCHC	5 cut(s)	873, 1525, 1699, 1788, 1831
SfcI	CTRYAG	3 cut(s)	837, 1881, 2193
SfuI	TTCGAA	2 cut(s)	1054, 1747
SmiMI	CAYNNNNRTG	6 cut(s)	560, 876, 1020, 1530, 2618, 3003
SmlI	CTYRAG	5 cut(s)	121, 508, 1063, 1658, 1805
SmoI	CTYRAG	5 cut(s)	121, 508, 1063, 1658, 1805
SpeI	ACTAGT	2 cut(s)	2159, 3013
SsiI	CCGC	5 cut(s)	707, 2045, 2134, 2325, 2841
SspI	AATATT	7 cut(s)	271, 1470, 1642, 2425, 2486, 2497, 2968
SspMI	CTAG	9 cut(s)	249, 461, 1254, 1287, 1430, 2160, 2312, 2657, 3014
SstI	GAGCTC	1 cut(s)	1525
StyD4I	CCNGG	4 cut(s)	455, 557, 1794, 2643
StyI	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
TaiI	ACGT	1 cut(s)	2252
TaqI	TCGA	7 cut(s)	222, 601, 915, 1054, 1747, 2254, 2450
TatI	WGTACW	2 cut(s)	498, 1722
TauI	GCSGC	1 cut(s)	2328
TfiI	GAWTC	5 cut(s)	205, 1439, 1565, 2709, 3027
TseFI	GTSAC	5 cut(s)	474, 1311, 1415, 1592, 2241
Tsp45I	GTSAC	5 cut(s)	474, 1311, 1415, 1592, 2241
TspGWI	ACGGA	1 cut(s)	178
Van91I	CCANNNNNTGG	3 cut(s)	331, 1823, 2377
Vha464I	CTTAAG	2 cut(s)	121, 508
VspI	ATTAAT	2 cut(s)	744, 2922
XapI	RAATTY	7 cut(s)	65, 374, 792, 852, 959, 1180, 2873
XbaI	TCTAGA	2 cut(s)	1429, 2656
XceI	RCATGY	3 cut(s)	802, 1792, 2599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmnI	GAANNNNTTC	3 cut(s)	270, 825, 1470
XspI	CTAG	9 cut(s)	249, 461, 1254, 1287, 1430, 2160, 2312, 2657, 3014
ZrmI	AGTACT	1 cut(s)	1724
Zsp2I	ATGCAT	2 cut(s)	1633, 2742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.