Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014789

Physical Location & Seq

Genomic Coordinates Forward (+)

41422952 .. 41431162

Gene Structure 8211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3330 bp

ATGTCTAATGAGCTTGAAGTGCTTCACCGATCAACAATGGGCTATACCAACGGCCAAAATGTAGAATTTCGGGCATTGTTTGAGCGGTGCAACTATCTAAATTTGATTTATAAAAACTACTTAAACGTTAAAGATGAGGTGATATATGCAGCTGTTGATGCACGGGTCAAAAATATAGCAGAAACCTACTTCCTTCAACACCAGAATCAAACACTTATTTTCTATCATCTGTTTAAGCTGCTAATTTCTAGCATACAAAATGAGGAAAATATTCCAAGCAAGGTGTTGCTGTGCTTTACAGGATCCCTTCAAACAATGTTTAGCCAGTGTATGGCCAAGGAAGAGGAGCAGATCATCCCTTTGCTCATTCAGAAATTCTCAGTTGAAGAGCAAGCTTCATTATTCTGGAAGCTTTTGAGCAGCATCCCCACGATTATAGTGGCTAAACTCATTCCCTGGTTAGCGTCGTCCGTTTCACCTGATGAATGTCAGCATCTGTACAAGTGCTTGAGTATGATAGCACCAGCCGAGAAGCTTCTCCAACAGGTCATTTTCGCCTGGATGGAAGGGAAAGACAATTGTGCTGGCATAACAGCTGATCGAAAAGATGATACAAGTTGTGCATATGAATTTAATGGGGTGTATCCAATAGATGATATGTTGCTTTGGCATCATGCTATTGAGACAGAGTTGAATGAAACACTTGCGGAGGCGAAGAAGATGCCTATTTCTGGAGATGTTACTAATTATGATCTACTGGCTTTCTATGACAGGCTGCAATTTATTGCTGAAATTTGCATGTTTCACAGTATTGCTGAGGAAACGGTTCAATATCCTGCAGTGTATGGAGAAATTTCAATTTTCCATGAGCACAGAAATGAAGTAAATCTAACCAATGAGTTAAGGTGTTTGCTCGAAAGTTTAAAAAGCGCATCAACAATTCCTTCCACAGCTGCTGAATTTCATTCAAAGATATGCTTCCTTGCTGATCAAATAATGAATACTTTAAAGGCACATTTCCATGATGCGGAAGTTAAGGTACTTCCACTTGCTCGAAAGCACTTGAGCATTAAAAGACAACAGGAACTTCTGCATCAGAGCTTTTGTGTGATGCCATTGAAACTAATTGAGCGTGTCTTGCCATGGTTGGCAAAGTCACTGACTGAAAATGAAGCCCAGAATTTTGTCAAGAACATGCAGTTGGCAGCTCCAGCATCAGATATCGCACTGGTGCAGCCCTTTTGTGGTTGGGCTAGCAAGGCTAGTAATGACTGCTTATGCTCATCTAGTTCCTTGCGTATCAACTCTACGTCACCATCACATTCAGTTTGTGAAAAATCCAATAGCCGTTCAACCACTGACATACCTGCACAACCAATAGATGTTGTTTTTAAAGTTCATAAGGTCATACGCCGTGACTTGGAATATCTAGATACTGAATCTGAAAGGCTTAGTAACTGTGATGAAATATTTCTTCAGCAGTTCATTGAAAGTTTCTGTTTGTTATGGGGCTTATATAGAGCTCATAGTAATGCAGAGGATTTTGTATTGTATCCGGCAATGGAATCCAGAGACGCACTTCAAAATGTAAGTCACTCCTACACAGTTGATCATAAGCAAGAGGAAGATGCATTTGAAAATATTTCAGGTGTTCTTCTTGAGCTTTCTCACCTTCACAGAGGTACAAGATCTGCTGCCCCCATAAGTGAATGTGTGGGAAAGTACTGTGAGCTGGCAAACAGGCTTCGAATAATGTTCATGTCGCTAAGAATGATGGTAGATGAGCACATGTACCGGGAAGAGCTTGAGCTGTGGCCATTATTTGGAGCACACTTCTCTGTAGAGGAGCAAAACAAAATGATCGGTTTCATACTGGGGACTACTGGTGCTGAAGTTCTCCAATCTATGTTACCATGGGTTACTGCTGCACTTACAGAGGATGAACAGAGTAAAATGATGGATACCTTCAAGAATGTTACGAAAAATACAATGTTCAAGGAGTGGCTTAGTGAATGCGGGAAAGGAATCTCACTGTCAACTCTACCGCCTAAACCGGAAACTAGCATTTTCATAAAAGGTACTGGATTTGAAGAAAGCCATCACCAAATTTATCATACTTTCAACTCTCATACGCGGAATAACTTGAAGCATCAAATGACTCGTTACTGGATTGCTGCTCAGCAGAGTTTAACTATAGCAATAGCAGTGGATAGTTCAAATAGTGAACAGTTAGGGGGACTGTCACCAACATTTCGAGATCATGAGAAAACAGTGTATGGCTGCCAGCATTACAAGAGAAACTGCAAACTCCTAGCTGCTTGCTGCGGCAAACTGTTTACTTGTAGATTTTGCCATGACATTATGAGCGACCACCCAATGGATAGGAAAGCAACATCCAAAATGATGTGTATGAGCTGTCTTAATATTCAGCCAGTTGGGCCAGTATGCTTGACAGCTACTTGCAATGGATTTCCAATGGCAAAATATTATTGTAATATTTGCAACCTCTTTGATGATGACAGGAATGTCTACCACTGTCCATTTTGCAACTTATGCCGGGTAGGGAAGGGCCTTGGCATTGATTATTTTCACTGCATGTCGTGCAATTGTTGCATGGGGATGGCTTCGGTGAACCACAAGTGCCAGGAGAAATGTCTAGAAACCAACTGCCCTGTCTGCAATGAGTTCTTATTCACATCAAGTTCAAGAATCAAAGCCTTACCATGTGGCCATTGTATGCATTTAGCTTGCTTCAAGACTTGCACTCAGAGCAACAGTCAATACACTTGTCCAGTTTGCAGCAAATCTTCAGGAGCTACGATGATGACATCAACTCAATCCTCACTATTTGTGGATGATGATGAGACCATGGAATTTTATAGCTATGACCCAAAAACTGAAATGACTTCATGCACTGATATTAATCCTGAAGGGAGATTTTTCATGAGCACGAGCTTCTGGGTAAATATTTTATATCAGCTTGTCTTATGGTTTGAACACCATAATGGAAGACTAGTTGTACCAAGATTCCTGCAAAGATTAAAAAGGAGATTGGAGAATGGAGTTGCAGGACAGAAGGCTAAAGAGAAGTGTGTGCTGTGTTGTATGGTGCTCAGCGGTCTGGTGTTGTTCTGTGTCGAGAAGAACACCACCGAAAACCTGACACCACCAATCAAGGCCGATGAGTCCTCCGACGATCTAGCTCCGCGATCCTATAAGAGAGATGATGAAGCAGTTGGGAATCGGACTGGACGCCGTCATTCGGGGAAGGAACATGGCAGAGATCGAGAGGACGTTGCCGACGGTTCCGGAGCCAATGAAAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1110

Amino Acids

126.1

Weight (kDa)

5.89

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CHY	PF05495	761 - 829	1.1e-17	CHY zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014789)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05930 FvH4_7g05930 FvH4_7g05930
malus_domestica	MD07G1068200.v1.1
prunus_persica	Prupe.2G085600_v2.0.a1
pyrus_communis	pycom07g05230
rosa_chinensis	RchiOBHm_Chr1g0333131
rosa_laevigata	RLG00000029624
rosa_multiflora	Rmu_sc0007432.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317770
rosa_rugosa	Rorug01G0107300 Rorug01G0107400
rosa_samantha	Rh1AG130600 Rh1BG099700 Rh1CG124400 Rh1DG135900
rosa_wichuraiana	Rw1G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AasI	GACNNNNNNGTC	1 cut(s)	2525
Acc36I	ACCTGC	1 cut(s)	1375
AccB7I	CCANNNNNTGG	3 cut(s)	331, 1823, 2377
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	2529
AccII	CGCG	2 cut(s)	2134, 3208
AccIII	TCCGGA	1 cut(s)	3308
AciI	CCGC	9 cut(s)	85, 707, 1028, 2016, 2045, 2134, 2325, 3117, 3206
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	3 cut(s)	297, 310, 3204
AcoI	YGGCCR	4 cut(s)	52, 333, 1814, 2728
AcuI	CTGAAG	4 cut(s)	1460, 1911, 2793, 2949
AcyI	GRCGYC	1 cut(s)	3253
AfaI	GTAC	7 cut(s)	500, 1041, 1684, 1724, 1793, 2080, 3021
AfiI	CCNNNNNNNGG	8 cut(s)	331, 731, 1027, 1244, 1420, 1823, 2377, 3262
AflIII	ACRYGT	1 cut(s)	1788
AhlI	ACTAGT	1 cut(s)	3013
AjnI	CCWGG	3 cut(s)	455, 557, 2643
AjuI	GAANNNNNNNTTGG	2 cut(s)	1184, 1216
Alw21I	GWGCWC	6 cut(s)	873, 1525, 1788, 1831, 2951, 3114
Alw26I	GTCTC	3 cut(s)	677, 1566, 2858
AlwI	GGATC	3 cut(s)	297, 310, 3204
AlwNI	CAGNNNCTG	2 cut(s)	496, 956
Aor13HI	TCCGGA	1 cut(s)	3308
AoxI	GGCC	7 cut(s)	52, 333, 1814, 2438, 2569, 2728, 3177
ArsI	GACNNNNNNTTYG	2 cut(s)	1576, 1608
AseI	ATTAAT	1 cut(s)	2922
Asp700I	GAANNNNTTC	4 cut(s)	21, 270, 825, 1470
AspLEI	GCGC	1 cut(s)	932
AspS9I	GGNCC	2 cut(s)	2438, 2569
AsuC2I	CCSGG	2 cut(s)	1796, 2558
AsuHPI	GGTGA	8 cut(s)	17, 151, 468, 1305, 1661, 2093, 2235, 2641
AsuII	TTCGAA	1 cut(s)	1747
AsuNHI	GCTAGC	1 cut(s)	1253
BalI	TGGCCA	3 cut(s)	335, 1816, 2730
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	1525
BarI	GAAGNNNNNNTAC	2 cut(s)	1023, 1055
BauI	CACGAG	1 cut(s)	2950
BbsI	GAAGAC	1 cut(s)	3016
Bbv12I	GWGCWC	6 cut(s)	873, 1525, 1788, 1831, 2951, 3114
BbvCI	CCTCAGC	1 cut(s)	816
BccI	CCATC	6 cut(s)	556, 1324, 1768, 1951, 2106, 2614
BceAI	ACGGC	4 cut(s)	67, 1332, 1398, 3240
BcgI	CGANNNNNNTGC	2 cut(s)	703, 737
BciT130I	CCWGG	3 cut(s)	457, 559, 2645
BciVI	GTATCC	3 cut(s)	654, 1563, 1954
BclI	TGATCA	2 cut(s)	988, 1609
BcnI	CCSGG	2 cut(s)	1796, 2558
BcoDI	GTCTC	3 cut(s)	677, 1566, 2858
BcuI	ACTAGT	1 cut(s)	3013
BfmI	CTRYAG	3 cut(s)	837, 1839, 2193
BfuAI	ACCTGC	1 cut(s)	1375
BfuI	GTATCC	3 cut(s)	654, 1563, 1954
BglI	GCCNNNNNGGC	1 cut(s)	2437
BglII	AGATCT	1 cut(s)	1688
BlpI	GCTNAGC	2 cut(s)	2178, 3113
BmcAI	AGTACT	1 cut(s)	1724
Bme1390I	CCNGG	5 cut(s)	457, 559, 1796, 2558, 2645
BmgT120I	GGNCC	2 cut(s)	2438, 2569
BmiI	GGNNCC	3 cut(s)	304, 3307, 3313
BmrFI	CCNGG	5 cut(s)	457, 559, 1796, 2558, 2645
BmrI	ACTGGG	1 cut(s)	1883
BmtI	GCTAGC	1 cut(s)	1257
BmuI	ACTGGG	1 cut(s)	1883
BpiI	GAAGAC	1 cut(s)	3016
BpmI	CTGGAG	2 cut(s)	753, 1194
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu1102I	GCTNAGC	2 cut(s)	2178, 3113
Bpu14I	TTCGAA	1 cut(s)	1747
BpuEI	CTTGAG	4 cut(s)	529, 1084, 1679, 1826
BpuMI	CCSGG	2 cut(s)	1796, 2558
BsaBI	GATNNNNATC	1 cut(s)	2922
BsaHI	GRCGYC	1 cut(s)	3253
BsaI	GGTCTC	1 cut(s)	2858
BsaJI	CCNNGG	6 cut(s)	336, 455, 1142, 1913, 2572, 2868
BsaWI	WCCGGW	2 cut(s)	2053, 3308
Bsc4I	CCNNNNNNNGG	8 cut(s)	331, 731, 1027, 1244, 1420, 1823, 2377, 3262
Bse3DI	GCAATG	3 cut(s)	1566, 2470, 2686
Bse8I	GATNNNNATC	1 cut(s)	2922
BseAI	TCCGGA	1 cut(s)	3308
BseBI	CCWGG	3 cut(s)	457, 559, 2645
BseDI	CCNNGG	6 cut(s)	336, 455, 1142, 1913, 2572, 2868
BseGI	GGATG	7 cut(s)	354, 423, 567, 1945, 2393, 2625, 2860
BseJI	GATNNNNATC	1 cut(s)	2922
BseLI	CCNNNNNNNGG	8 cut(s)	331, 731, 1027, 1244, 1420, 1823, 2377, 3262
BseMI	GCAATG	3 cut(s)	1566, 2470, 2686
BseMII	CTCAG	5 cut(s)	393, 807, 2192, 2780, 3127
BseRI	GAGGAG	2 cut(s)	359, 1859
BsgI	GTGCAG	3 cut(s)	1253, 1353, 1911
Bsh1236I	CGCG	2 cut(s)	2134, 3208
BshFI	GGCC	7 cut(s)	54, 335, 1816, 2440, 2571, 2730, 3179
BsiHKAI	GWGCWC	6 cut(s)	873, 1525, 1788, 1831, 2951, 3114
BsiSI	CCGG	5 cut(s)	1556, 1795, 2054, 2557, 3309
BslFI	GGGAC	2 cut(s)	1891, 2250
BslI	CCNNNNNNNGG	8 cut(s)	331, 731, 1027, 1244, 1420, 1823, 2377, 3262
BsmAI	GTCTC	3 cut(s)	677, 1566, 2858
BsmBI	CGTCTC	1 cut(s)	1566
BsmFI	GGGAC	2 cut(s)	1891, 2250
BsmI	GAATGC	1 cut(s)	2018
BsnI	GGCC	7 cut(s)	54, 335, 1816, 2440, 2571, 2730, 3179
Bso31I	GGTCTC	1 cut(s)	2858
Bsp119I	TTCGAA	1 cut(s)	1747
Bsp1286I	GDGCHC	6 cut(s)	873, 1525, 1788, 1831, 2951, 3114
Bsp13I	TCCGGA	1 cut(s)	3308
Bsp1407I	TGTACA	1 cut(s)	498
Bsp1720I	GCTNAGC	2 cut(s)	2178, 3113
Bsp19I	CCATGG	3 cut(s)	1142, 1913, 2868
BspACI	CCGC	9 cut(s)	85, 707, 1028, 2016, 2045, 2134, 2325, 3117, 3206
BspANI	GGCC	7 cut(s)	54, 335, 1816, 2440, 2571, 2730, 3179
BspCNI	CTCAG	5 cut(s)	392, 808, 2191, 2779, 3126
BspEI	TCCGGA	1 cut(s)	3308
BspFNI	CGCG	2 cut(s)	2134, 3208
BspHI	TCATGA	2 cut(s)	2260, 2943
BspLI	GGNNCC	3 cut(s)	304, 3307, 3313
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	1375
BspOI	GCTAGC	1 cut(s)	1257
BspPI	GGATC	3 cut(s)	297, 310, 3204
BspQI	GCTCTTC	2 cut(s)	381, 1794
BspT104I	TTCGAA	1 cut(s)	1747
BspTNI	GGTCTC	1 cut(s)	2858
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	3 cut(s)	1566, 2470, 2686
BsrGI	TGTACA	1 cut(s)	498
BssECI	CCNNGG	6 cut(s)	336, 455, 1142, 1913, 2572, 2868
BssNI	GRCGYC	1 cut(s)	3253
BssSI	CACGAG	1 cut(s)	2950
BssT1I	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
Bst2BI	CACGAG	1 cut(s)	2950
Bst2UI	CCWGG	3 cut(s)	457, 559, 2645
Bst6I	CTCTTC	3 cut(s)	336, 381, 1794
BstACI	GRCGYC	1 cut(s)	3253
BstAPI	GCANNNNNTGC	3 cut(s)	2553, 2601, 2610
BstAUI	TGTACA	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	1747
BstC8I	GCNNGC	7 cut(s)	393, 586, 1255, 1734, 2285, 2320, 2749
BstDEI	CTNAG	8 cut(s)	379, 816, 1451, 1766, 2006, 2178, 2766, 3113
BstDSI	CCRYGG	3 cut(s)	1142, 1913, 2868
BstF5I	GGATG	7 cut(s)	354, 423, 567, 1945, 2393, 2625, 2860
BstFNI	CGCG	2 cut(s)	2134, 3208
BstHHI	GCGC	1 cut(s)	932
BstMAI	GTCTC	3 cut(s)	677, 1566, 2858
BstNI	CCWGG	3 cut(s)	457, 559, 2645
BstNSI	RCATGY	4 cut(s)	802, 1198, 1792, 2599
BstSCI	CCNGG	5 cut(s)	455, 557, 1794, 2556, 2643
BstSFI	CTRYAG	3 cut(s)	837, 1839, 2193
BstUI	CGCG	2 cut(s)	2134, 3208
BstV2I	GAAGAC	1 cut(s)	3016
BstX2I	RGATCY	2 cut(s)	302, 1688
BstYI	RGATCY	2 cut(s)	302, 1688
BsuI	GTATCC	3 cut(s)	654, 1563, 1954
BsuRI	GGCC	7 cut(s)	54, 335, 1816, 2440, 2571, 2730, 3179
BtgI	CCRYGG	3 cut(s)	1142, 1913, 2868
BtsCI	GGATG	7 cut(s)	354, 423, 567, 1945, 2393, 2625, 2860
BtsI	GCAGTG	3 cut(s)	846, 2211, 2590
BveI	ACCTGC	1 cut(s)	1375
Cac8I	GCNNGC	7 cut(s)	393, 586, 1255, 1734, 2285, 2320, 2749
CaiI	CAGNNNCTG	2 cut(s)	496, 956
CciI	TCATGA	2 cut(s)	2260, 2943
CfoI	GCGC	1 cut(s)	932
Cfr13I	GGNCC	2 cut(s)	2438, 2569
CseI	GACGC	3 cut(s)	453, 1583, 3261
Csp6I	GTAC	7 cut(s)	499, 1040, 1683, 1723, 1792, 2079, 3020
CspCI	CAANNNNNGTGG	2 cut(s)	2187, 2222
CviQI	GTAC	7 cut(s)	499, 1040, 1683, 1723, 1792, 2079, 3020
DdeI	CTNAG	8 cut(s)	379, 816, 1451, 1766, 2006, 2178, 2766, 3113
DraI	TTTAAA	3 cut(s)	924, 1008, 1393
DrdI	GACNNNNNNGTC	1 cut(s)	2525
DseDI	GACNNNNNNGTC	1 cut(s)	2525
EaeI	YGGCCR	4 cut(s)	52, 333, 1814, 2728
Eam1104I	CTCTTC	3 cut(s)	336, 381, 1794
EarI	CTCTTC	3 cut(s)	336, 381, 1794
Ecl136II	GAGCTC	1 cut(s)	1523
Eco130I	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
Eco24I	GRGCYC	1 cut(s)	1525
Eco31I	GGTCTC	1 cut(s)	2858
Eco32I	GATATC	1 cut(s)	1222
Eco53kI	GAGCTC	1 cut(s)	1523
Eco57I	CTGAAG	4 cut(s)	1460, 1911, 2793, 2949
EcoICRI	GAGCTC	1 cut(s)	1523
EcoO109I	RGGNCCY	1 cut(s)	2569
EcoRII	CCWGG	3 cut(s)	455, 557, 2643
EcoRV	GATATC	1 cut(s)	1222
EcoT14I	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
EcoT22I	ATGCAT	2 cut(s)	1633, 2742
EcoT38I	GRGCYC	1 cut(s)	1525
ErhI	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
Esp3I	CGTCTC	1 cut(s)	1566
FalI	AAGNNNNNCTT	2 cut(s)	962, 994
FaqI	GGGAC	2 cut(s)	1891, 2250
FauI	CCCGC	1 cut(s)	2009
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	2 cut(s)	988, 1609
FblI	GTMKAC	1 cut(s)	2529
FokI	GGATG	7 cut(s)	341, 410, 574, 1952, 2380, 2632, 2867
FriOI	GRGCYC	1 cut(s)	1525
GlaI	GCGC	1 cut(s)	931
GsuI	CTGGAG	2 cut(s)	753, 1194
HaeIII	GGCC	7 cut(s)	54, 335, 1816, 2440, 2571, 2730, 3179
HapII	CCGG	5 cut(s)	1556, 1795, 2054, 2557, 3309
HgaI	GACGC	3 cut(s)	453, 1583, 3261
HhaI	GCGC	1 cut(s)	932
Hin1I	GRCGYC	1 cut(s)	3253
Hin6I	GCGC	1 cut(s)	930
HinP1I	GCGC	1 cut(s)	930
HincII	GTYRAC	1 cut(s)	2037
HindII	GTYRAC	1 cut(s)	2037
HindIII	AAGCTT	3 cut(s)	393, 410, 533
HinfI	GANTC	9 cut(s)	205, 1439, 1565, 2025, 2158, 2709, 3027, 3185, 3241
HpaII	CCGG	5 cut(s)	1556, 1795, 2054, 2557, 3309
HphI	GGTGA	8 cut(s)	17, 151, 468, 1305, 1661, 2093, 2235, 2641
Hpy166II	GTNNAC	5 cut(s)	2037, 2225, 2337, 2530, 2632
Hpy188I	TCNGA	7 cut(s)	372, 1098, 1219, 1444, 2769, 3193, 3246
Hpy8I	GTNNAC	5 cut(s)	2037, 2225, 2337, 2530, 2632
Hpy99I	CGWCG	3 cut(s)	469, 3197, 3305
HpyCH4IV	ACGT	3 cut(s)	126, 1310, 3294
HpyF3I	CTNAG	8 cut(s)	379, 816, 1451, 1766, 2006, 2178, 2766, 3113
HpySE526I	ACGT	3 cut(s)	126, 1310, 3294
Hsp92I	GRCGYC	1 cut(s)	3253
HspAI	GCGC	1 cut(s)	930
Kpn2I	TCCGGA	1 cut(s)	3308
Ksp22I	TGATCA	2 cut(s)	988, 1609
LguI	GCTCTTC	2 cut(s)	381, 1794
LmnI	GCTCC	7 cut(s)	346, 1213, 1826, 1846, 2813, 3208, 3311
MaeII	ACGT	3 cut(s)	126, 1310, 3294
MbiI	CCGCTC	1 cut(s)	85
MfeI	CAATTG	2 cut(s)	577, 2605
MflI	RGATCY	2 cut(s)	302, 1688
MhlI	GDGCHC	6 cut(s)	873, 1525, 1788, 1831, 2951, 3114
MlsI	TGGCCA	3 cut(s)	335, 1816, 2730
MluNI	TGGCCA	3 cut(s)	335, 1816, 2730
MlyI	GAGTC	2 cut(s)	2152, 3194
MmeI	TCCRAC	2 cut(s)	565, 3216
Mox20I	TGGCCA	3 cut(s)	335, 1816, 2730
Mph1103I	ATGCAT	2 cut(s)	1633, 2742
MroI	TCCGGA	1 cut(s)	3308
MroXI	GAANNNNTTC	4 cut(s)	21, 270, 825, 1470
MscI	TGGCCA	3 cut(s)	335, 1816, 2730
MslI	CAYNNNNRTG	5 cut(s)	876, 1020, 1530, 2618, 3003
Msp20I	TGGCCA	3 cut(s)	335, 1816, 2730
MspA1I	CMGCKG	4 cut(s)	152, 596, 953, 3117
MspI	CCGG	5 cut(s)	1556, 1795, 2054, 2557, 3309
MspR9I	CCNGG	5 cut(s)	457, 559, 1796, 2558, 2645
MunI	CAATTG	2 cut(s)	577, 2605
Mva1269I	GAATGC	1 cut(s)	2018
MvaI	CCWGG	3 cut(s)	457, 559, 2645
MvnI	CGCG	2 cut(s)	2134, 3208
NciI	CCSGG	2 cut(s)	1796, 2558
NcoI	CCATGG	3 cut(s)	1142, 1913, 2868
NdeI	CATATG	1 cut(s)	625
NheI	GCTAGC	1 cut(s)	1253
NlaIV	GGNNCC	3 cut(s)	304, 3307, 3313
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	5 cut(s)	1155, 1311, 1415, 1592, 2241
NsiI	ATGCAT	2 cut(s)	1633, 2742
NspI	RCATGY	4 cut(s)	802, 1198, 1792, 2599
NspV	TTCGAA	1 cut(s)	1747
PagI	TCATGA	2 cut(s)	2260, 2943
PciI	ACATGT	1 cut(s)	1788
PciSI	GCTCTTC	2 cut(s)	381, 1794
PctI	GAATGC	1 cut(s)	2018
PdmI	GAANNNNTTC	4 cut(s)	21, 270, 825, 1470
PfeI	GAWTC	7 cut(s)	205, 1439, 1565, 2025, 2709, 3027, 3241
PflFI	GACNNNGTC	1 cut(s)	3255
PflMI	CCANNNNNTGG	3 cut(s)	331, 1823, 2377
PleI	GAGTC	2 cut(s)	2152, 3193
PpsI	GAGTC	2 cut(s)	2152, 3193
PscI	ACATGT	1 cut(s)	1788
PshBI	ATTAAT	1 cut(s)	2922
PsiI	TTATAA	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	1525
Psp1406I	AACGTT	1 cut(s)	126
Psp6I	CCWGG	3 cut(s)	455, 557, 2643
PspGI	CCWGG	3 cut(s)	455, 557, 2643
PspN4I	GGNNCC	3 cut(s)	304, 3307, 3313
PspPI	GGNCC	2 cut(s)	2438, 2569
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	2 cut(s)	496, 956
PsuI	RGATCY	2 cut(s)	302, 1688
PsyI	GACNNNGTC	1 cut(s)	3255
PvuII	CAGCTG	3 cut(s)	152, 596, 953
RsaI	GTAC	7 cut(s)	500, 1041, 1684, 1724, 1793, 2080, 3021
RsaNI	GTAC	7 cut(s)	499, 1040, 1683, 1723, 1792, 2079, 3020
RseI	CAYNNNNRTG	5 cut(s)	876, 1020, 1530, 2618, 3003
SacI	GAGCTC	1 cut(s)	1525
SapI	GCTCTTC	2 cut(s)	381, 1794
Sau96I	GGNCC	2 cut(s)	2438, 2569
ScaI	AGTACT	1 cut(s)	1724
SchI	GAGTC	2 cut(s)	2152, 3194
ScrFI	CCNGG	5 cut(s)	457, 559, 1796, 2558, 2645
SduI	GDGCHC	6 cut(s)	873, 1525, 1788, 1831, 2951, 3114
SfcI	CTRYAG	3 cut(s)	837, 1839, 2193
SfuI	TTCGAA	1 cut(s)	1747
SmiMI	CAYNNNNRTG	5 cut(s)	876, 1020, 1530, 2618, 3003
SmlI	CTYRAG	4 cut(s)	508, 1063, 1658, 1805
SmoI	CTYRAG	4 cut(s)	508, 1063, 1658, 1805
SpeI	ACTAGT	1 cut(s)	3013
SsiI	CCGC	9 cut(s)	85, 707, 1028, 2016, 2045, 2134, 2325, 3117, 3206
SspI	AATATT	7 cut(s)	271, 1470, 1642, 2425, 2486, 2497, 2968
SstI	GAGCTC	1 cut(s)	1525
StyD4I	CCNGG	5 cut(s)	455, 557, 1794, 2556, 2643
StyI	CCWWGG	5 cut(s)	336, 1142, 1913, 2572, 2868
TaiI	ACGT	3 cut(s)	129, 1313, 3297
TaqI	TCGA	7 cut(s)	601, 915, 1054, 1747, 2254, 3138, 3286
TatI	WGTACW	2 cut(s)	498, 1722
TauI	GCSGC	1 cut(s)	2328
TfiI	GAWTC	7 cut(s)	205, 1439, 1565, 2025, 2709, 3027, 3241
TseFI	GTSAC	5 cut(s)	1155, 1311, 1415, 1592, 2241
Tsp45I	GTSAC	5 cut(s)	1155, 1311, 1415, 1592, 2241
TspGWI	ACGGA	1 cut(s)	460
Tth111I	GACNNNGTC	1 cut(s)	3255
Van91I	CCANNNNNTGG	3 cut(s)	331, 1823, 2377
VspI	ATTAAT	1 cut(s)	2922
XbaI	TCTAGA	2 cut(s)	1429, 2656
XceI	RCATGY	4 cut(s)	802, 1198, 1792, 2599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	2529
XmnI	GAANNNNTTC	4 cut(s)	21, 270, 825, 1470
ZrmI	AGTACT	1 cut(s)	1724
Zsp2I	ATGCAT	2 cut(s)	1633, 2742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.