Prupe.2G326300_v2.0.a1

4-coumarate-coa ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
30110011 .. 30112976
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G326300.1

Sequence Viewer

Length: 1047 bp
ATTTTCAAGCAGTTCAAGGCTTCCAATGCCAAGCTCATCATCACTCATTCCCAGTTCGTCGACAAGCTTCGAGAAGCTCCTGCCGACGGCGCCGCCCCCGACCAAAATAACTACCCGAAACTTGGCGAACACTTTAAAGTTGTCACAGTGGACGATCCTCCAGAGAATTGCTTGCATTTCTCGGTGATCTCGGAGGCCAACGAGACGGAGCTTCCGGAGGTGGTGATCGATCCGGAGGACCCAGTAGCGTTACCATTTTCTTCGGGGACGACGGGGCTGCCCAAGGGTGTGATTCTAACGCACAAGAGCTTGATCACCAGCGTGGCCCAGCAGGTGGACGGGGAGAATCCAAACCTGTACTTGAAGGAAGACGACGTGGTACTGTGCGTGCTGCCGCTGTTTCACATATACTCGCTGAACAGTGTGATGCTGTGCTCGCTGAGAGCAGGGGCGGCAGTGCTGGTGATGCACAAGTTTGAGATCGGGACACTGCTGGAGCTGATACAGCGGTACCGGGTGTCGGTGGCGGCGGTGGTGCCACCGCTGGTGATAGCATTGGCGAAGAATCCAATGGTGGCGCAGTTCGACCTGAGCTCGATTAGAGTGGTGTTGTCGGGAGCGGCGCCGCTGGGAAAGGAGTTGGAGGAGGCGCTCAAGAGCCGAGTCCCTCGGGCAGTCTTGGGTCAGGGATATGGGATGACTGAAGCAGGGCCGGTGCTATCGATGTGCTTGGCATTCGCAAAGGAACCGTTGCCAAGCAAGTCAGGGTCATGCGGGACGGTGGTTAGAAATGCAGAGCTCAAGGTCATTGACGCTGAAACTGGTTGCTCCCTTGGCTACAACCAACCCGGCGAGATTTGCATCCGCGGCTCTCAAATCATGAAAGGGTATTTGAATGATGCGGAGGCAACGGCAACGACGGTGGATAAGGAGGGGTGGCTTCACACTGGTGACGTGGGTTTTGTGGATGATGATGAGGAGGTTTTTATTGTGGACAGAGTGAAGGAGCTCATCAAATTCAAAGGCTTTCAAGTATGTTATATATAA

Protein Analysis

349

Amino Acids

37.65

Weight (kDa)

5.05

Isoelectric Point (pI)

23.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 510
AccB1I GGYRCC 4 cut(s) 89, 510, 535, 622
AccB7I CCANNNNNTGG 1 cut(s) 334
AccBSI CCGCTC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 867
AccIII TCCGGA 2 cut(s) 214, 232
AclWI GGATC 2 cut(s) 149, 224
AcsI RAATTY 1 cut(s) 1016
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 2 cut(s) 90, 623
AfaI GTAC 3 cut(s) 359, 381, 512
AfiI CCNNNNNNNGG 4 cut(s) 86, 122, 334, 520
AgsI TTSAA 6 cut(s) 7, 16, 364, 895, 1021, 1031
AjiI CACGTC 2 cut(s) 376, 955
AleI CACNNNNGTG 2 cut(s) 320, 948
AluBI AGCT 9 cut(s) 34, 67, 77, 211, 309, 499, 594, 799, 1009
AluI AGCT 9 cut(s) 34, 67, 77, 211, 309, 499, 594, 799, 1009
Alw21I GWGCWC 4 cut(s) 437, 596, 801, 1011
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 149, 224
Ama87I CYCGRG 1 cut(s) 669
Aor13HI TCCGGA 2 cut(s) 214, 232
AoxI GGCC 3 cut(s) 195, 324, 710
ApeKI GCWGC 2 cut(s) 277, 391
ApoI RAATTY 1 cut(s) 1016
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
Asp718I GGTACC 1 cut(s) 510
AspLEI GCGC 4 cut(s) 92, 580, 625, 652
AspS9I GGNCC 3 cut(s) 238, 325, 710
AsuC2I CCSGG 2 cut(s) 515, 849
AsuHPI GGTGA 6 cut(s) 196, 235, 307, 475, 559, 962
AvaI CYCGRG 1 cut(s) 669
AvaII GGWCC 1 cut(s) 238
BaeI ACNNNNGTAYC 4 cut(s) 494, 494, 527, 527
BanI GGYRCC 4 cut(s) 89, 510, 535, 622
BanII GRGCYC 3 cut(s) 596, 801, 1011
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 4 cut(s) 437, 596, 801, 1011
BbvI GCAGC 2 cut(s) 264, 378
BceAI ACGGC 2 cut(s) 103, 927
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 2 cut(s) 515, 849
BcoDI GTCTC 1 cut(s) 197
BfoI RGCGCY 3 cut(s) 93, 626, 653
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 9 cut(s) 93, 278, 392, 395, 453, 528, 621, 626, 868
BlsI GCNGC 9 cut(s) 94, 279, 393, 396, 454, 529, 622, 627, 869
Bme1390I CCNGG 2 cut(s) 515, 849
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 669
BmgBI CACGTC 2 cut(s) 376, 955
BmgT120I GGNCC 3 cut(s) 238, 325, 710
BmiI GGNNCC 6 cut(s) 91, 240, 512, 537, 624, 747
BmrFI CCNGG 2 cut(s) 515, 849
BmrI ACTGGG 2 cut(s) 46, 236
BmsI GCATC 4 cut(s) 417, 456, 870, 889
BmuI ACTGGG 2 cut(s) 46, 236
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 2 cut(s) 144, 515
Bpu10I CCTNAGC 1 cut(s) 590
BpuEI CTTGAG 2 cut(s) 638, 785
BpuMI CCSGG 2 cut(s) 515, 849
Bsa29I ATCGAT 2 cut(s) 228, 722
BsaBI GATNNNNATC 1 cut(s) 860
BsaHI GRCGYC 2 cut(s) 90, 623
BsaJI CCNNGG 4 cut(s) 282, 668, 832, 865
BsaWI WCCGGW 2 cut(s) 214, 232
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 122, 334, 520
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 4 cut(s) 52, 242, 826, 952
Bse8I GATNNNNATC 1 cut(s) 860
BseAI TCCGGA 2 cut(s) 214, 232
BseCI ATCGAT 2 cut(s) 228, 722
BseDI CCNNGG 4 cut(s) 282, 668, 832, 865
BseGI GGATG 3 cut(s) 702, 861, 973
BseJI GATNNNNATC 1 cut(s) 860
BseLI CCNNNNNNNGG 4 cut(s) 86, 122, 334, 520
BseMII CTCAG 2 cut(s) 431, 581
BseNI ACTGG 4 cut(s) 52, 242, 826, 952
BseRI GAGGAG 2 cut(s) 659, 992
BseXI GCAGC 2 cut(s) 264, 378
BseYI CCCAGC 2 cut(s) 327, 628
Bsh1236I CGCG 1 cut(s) 867
BshFI GGCC 3 cut(s) 197, 326, 712
BshNI GGYRCC 4 cut(s) 89, 510, 535, 622
BshVI ATCGAT 2 cut(s) 228, 722
BsiHKAI GWGCWC 4 cut(s) 437, 596, 801, 1011
BsiHKCI CYCGRG 1 cut(s) 669
BsiSI CCGG 5 cut(s) 215, 233, 514, 713, 849
BslFI GGGAC 4 cut(s) 280, 499, 650, 790
BslI CCNNNNNNNGG 4 cut(s) 86, 122, 334, 520
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 4 cut(s) 280, 499, 650, 790
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 3 cut(s) 197, 326, 712
BsoBI CYCGRG 1 cut(s) 669
Bsp1286I GDGCHC 4 cut(s) 437, 596, 801, 1011
Bsp13I TCCGGA 2 cut(s) 214, 232
Bsp143I GATC 6 cut(s) 154, 186, 225, 229, 312, 480
BspANI GGCC 3 cut(s) 197, 326, 712
BspCNI CTCAG 2 cut(s) 432, 582
BspDI ATCGAT 2 cut(s) 228, 722
BspEI TCCGGA 2 cut(s) 214, 232
BspFNI CGCG 1 cut(s) 867
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 6 cut(s) 91, 240, 512, 537, 624, 747
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 149, 224
BspT107I GGYRCC 4 cut(s) 89, 510, 535, 622
BsrBI CCGCTC 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 4 cut(s) 52, 242, 826, 952
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 4 cut(s) 282, 668, 832, 865
BssMI GATC 6 cut(s) 154, 186, 225, 229, 312, 480
BssNI GRCGYC 2 cut(s) 90, 623
BssT1I CCWWGG 2 cut(s) 282, 832
Bst4CI ACNGT 6 cut(s) 148, 384, 422, 750, 781, 922
BstACI GRCGYC 2 cut(s) 90, 623
BstC8I GCNNGC 3 cut(s) 173, 389, 437
BstDEI CTNAG 2 cut(s) 440, 590
BstDSI CCRYGG 1 cut(s) 865
BstF5I GGATG 3 cut(s) 702, 861, 973
BstFNI CGCG 1 cut(s) 867
BstH2I RGCGCY 3 cut(s) 93, 626, 653
BstHHI GCGC 4 cut(s) 92, 580, 625, 652
BstKTI GATC 6 cut(s) 157, 189, 228, 232, 315, 483
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 6 cut(s) 154, 186, 225, 229, 312, 480
BstMWI GCNNNNNNNGC 9 cut(s) 26, 89, 436, 452, 466, 505, 834, 858, 867
BstSCI CCNGG 2 cut(s) 513, 847
BstUI CGCG 1 cut(s) 867
BstV1I GCAGC 2 cut(s) 264, 378
BstV2I GAAGAC 1 cut(s) 375
Bsu15I ATCGAT 2 cut(s) 228, 722
BsuRI GGCC 3 cut(s) 197, 326, 712
BsuTUI ATCGAT 2 cut(s) 228, 722
BtgI CCRYGG 1 cut(s) 865
BtrI CACGTC 2 cut(s) 376, 955
BtsCI GGATG 3 cut(s) 702, 861, 973
BtsI GCAGTG 2 cut(s) 462, 488
BtsIMutI CAGTG 5 cut(s) 153, 427, 462, 488, 945
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 3 cut(s) 173, 389, 437
CciI TCATGA 1 cut(s) 879
CfoI GCGC 4 cut(s) 92, 580, 625, 652
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 3 cut(s) 238, 325, 710
Cfr42I CCGCGG 1 cut(s) 868
ClaI ATCGAT 2 cut(s) 228, 722
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 358, 380, 511
CspCI CAANNNNNGTGG 2 cut(s) 903, 938
CviAII CATG 2 cut(s) 771, 880
CviQI GTAC 3 cut(s) 358, 380, 511
DdeI CTNAG 2 cut(s) 440, 590
DinI GGCGCC 2 cut(s) 91, 624
DpnI GATC 6 cut(s) 156, 188, 227, 231, 314, 482
DpnII GATC 6 cut(s) 154, 186, 225, 229, 312, 480
DraI TTTAAA 1 cut(s) 136
Ecl136II GAGCTC 3 cut(s) 594, 799, 1009
Eco130I CCWWGG 2 cut(s) 282, 832
Eco24I GRGCYC 3 cut(s) 596, 801, 1011
Eco47I GGWCC 1 cut(s) 238
Eco53kI GAGCTC 3 cut(s) 594, 799, 1009
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 669
EcoICRI GAGCTC 3 cut(s) 594, 799, 1009
EcoO109I RGGNCCY 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 282, 832
EcoT38I GRGCYC 3 cut(s) 596, 801, 1011
EgeI GGCGCC 2 cut(s) 91, 624
EheI GGCGCC 2 cut(s) 91, 624
ErhI CCWWGG 2 cut(s) 282, 832
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 2 cut(s) 774, 883
FaiI YATR 9 cut(s) 407, 409, 693, 772, 881, 1036, 1041, 1043, 1045
FaqI GGGAC 4 cut(s) 280, 499, 650, 790
FatI CATG 2 cut(s) 770, 879
FauI CCCGC 1 cut(s) 767
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 9 cut(s) 93, 278, 392, 395, 453, 528, 621, 626, 868
FokI GGATG 3 cut(s) 709, 848, 980
FriOI GRGCYC 3 cut(s) 596, 801, 1011
Fsp4HI GCNGC 9 cut(s) 93, 278, 392, 395, 453, 528, 621, 626, 868
GlaI GCGC 4 cut(s) 91, 579, 624, 651
GluI GCNGC 9 cut(s) 93, 278, 392, 395, 453, 528, 621, 626, 868
GsaI CCCAGC 2 cut(s) 331, 632
GsuI CTGGAG 2 cut(s) 144, 515
HaeII RGCGCY 3 cut(s) 93, 626, 653
HaeIII GGCC 3 cut(s) 197, 326, 712
HapII CCGG 5 cut(s) 215, 233, 514, 713, 849
HgaI GACGC 1 cut(s) 821
HhaI GCGC 4 cut(s) 92, 580, 625, 652
Hin1I GRCGYC 2 cut(s) 90, 623
Hin1II CATG 2 cut(s) 774, 883
Hin6I GCGC 4 cut(s) 90, 578, 623, 650
HinP1I GCGC 4 cut(s) 90, 578, 623, 650
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 4 cut(s) 292, 346, 565, 663
HpaII CCGG 5 cut(s) 215, 233, 514, 713, 849
HphI GGTGA 6 cut(s) 196, 235, 307, 475, 559, 962
Hpy166II GTNNAC 4 cut(s) 61, 151, 337, 994
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 8 cut(s) 71, 161, 215, 233, 484, 615, 655, 880
Hpy8I GTNNAC 4 cut(s) 61, 151, 337, 994
Hpy99I CGWCG 5 cut(s) 62, 89, 274, 377, 922
HpyAV CCTTC 2 cut(s) 358, 997
HpyCH4III ACNGT 6 cut(s) 148, 384, 422, 750, 781, 922
HpyCH4IV ACGT 2 cut(s) 375, 954
HpyCH4V TGCA 4 cut(s) 175, 469, 794, 861
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 89, 436, 452, 466, 505, 834, 858, 867
HpyF3I CTNAG 2 cut(s) 440, 590
HpySE526I ACGT 2 cut(s) 375, 954
Hsp92I GRCGYC 2 cut(s) 90, 623
Hsp92II CATG 2 cut(s) 774, 883
HspAI GCGC 4 cut(s) 90, 578, 623, 650
KasI GGCGCC 2 cut(s) 89, 622
Kpn2I TCCGGA 2 cut(s) 214, 232
KpnI GGTACC 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 312
KspI CCGCGG 1 cut(s) 868
Kzo9I GATC 6 cut(s) 154, 186, 225, 229, 312, 480
LmnI GCTCC 6 cut(s) 82, 208, 496, 617, 833, 1006
Lsp1109I GCAGC 2 cut(s) 264, 378
LweI GCATC 4 cut(s) 417, 456, 870, 889
MaeII ACGT 2 cut(s) 375, 954
MaeIII GTNAC 3 cut(s) 142, 249, 950
MalI GATC 6 cut(s) 156, 188, 227, 231, 314, 482
MbiI CCGCTC 1 cut(s) 620
MboI GATC 6 cut(s) 154, 186, 225, 229, 312, 480
MboII GAAGA 3 cut(s) 252, 380, 574
MhlI GDGCHC 4 cut(s) 437, 596, 801, 1011
MluCI AATT 2 cut(s) 166, 1016
Mly113I GGCGCC 2 cut(s) 90, 623
MlyI GAGTC 1 cut(s) 672
MmeI TCCRAC 1 cut(s) 621
MroI TCCGGA 2 cut(s) 214, 232
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 2 cut(s) 320, 948
MspA1I CMGCKG 5 cut(s) 397, 508, 544, 628, 867
MspI CCGG 5 cut(s) 215, 233, 514, 713, 849
MspR9I CCNGG 2 cut(s) 515, 849
Mva1269I GAATGC 1 cut(s) 734
MvnI CGCG 1 cut(s) 867
MwoI GCNNNNNNNGC 9 cut(s) 26, 89, 436, 452, 466, 505, 834, 858, 867
NarI GGCGCC 2 cut(s) 90, 623
NciI CCSGG 2 cut(s) 515, 849
NdeII GATC 6 cut(s) 154, 186, 225, 229, 312, 480
NlaIII CATG 2 cut(s) 774, 883
NlaIV GGNNCC 6 cut(s) 91, 240, 512, 537, 624, 747
NmeAIII GCCGAG 1 cut(s) 686
NmuCI GTSAC 2 cut(s) 142, 950
OliI CACNNNNGTG 2 cut(s) 320, 948
PagI TCATGA 1 cut(s) 879
PaqCI CACCTGC 1 cut(s) 322
PctI GAATGC 1 cut(s) 734
PfeI GAWTC 3 cut(s) 292, 346, 565
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 9 cut(s) 94, 279, 393, 396, 454, 529, 622, 627, 869
PleI GAGTC 1 cut(s) 671
PluTI GGCGCC 2 cut(s) 93, 626
PpsI GAGTC 1 cut(s) 671
PpuMI RGGWCCY 1 cut(s) 238
Psp124BI GAGCTC 3 cut(s) 596, 801, 1011
Psp5II RGGWCCY 1 cut(s) 238
PspFI CCCAGC 2 cut(s) 327, 628
PspN4I GGNNCC 6 cut(s) 91, 240, 512, 537, 624, 747
PspPI GGNCC 3 cut(s) 238, 325, 710
PspPPI RGGWCCY 1 cut(s) 238
RsaI GTAC 3 cut(s) 359, 381, 512
RsaNI GTAC 3 cut(s) 358, 380, 511
RseI CAYNNNNRTG 2 cut(s) 320, 948
SacI GAGCTC 3 cut(s) 596, 801, 1011
SacII CCGCGG 1 cut(s) 868
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 9 cut(s) 93, 278, 392, 395, 453, 528, 621, 626, 868
Sau3AI GATC 6 cut(s) 154, 186, 225, 229, 312, 480
Sau96I GGNCC 3 cut(s) 238, 325, 710
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 2 cut(s) 515, 849
SduI GDGCHC 4 cut(s) 437, 596, 801, 1011
SfaNI GCATC 4 cut(s) 417, 456, 870, 889
SfoI GGCGCC 2 cut(s) 91, 624
Sfr303I CCGCGG 1 cut(s) 868
SgrBI CCGCGG 1 cut(s) 868
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 2 cut(s) 320, 948
SmlI CTYRAG 2 cut(s) 653, 800
SmoI CTYRAG 2 cut(s) 653, 800
Sse9I AATT 2 cut(s) 166, 1016
SspDI GGCGCC 2 cut(s) 89, 622
SstI GAGCTC 3 cut(s) 596, 801, 1011
StyD4I CCNGG 2 cut(s) 513, 847
StyI CCWWGG 2 cut(s) 282, 832
TaaI ACNGT 6 cut(s) 148, 384, 422, 750, 781, 922
TaiI ACGT 2 cut(s) 378, 957
TaqI TCGA 6 cut(s) 60, 70, 228, 585, 596, 722
TasI AATT 2 cut(s) 166, 1016
TatI WGTACW 1 cut(s) 357
TauI GCSGC 7 cut(s) 95, 397, 455, 530, 623, 628, 870
TfiI GAWTC 3 cut(s) 292, 346, 565
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 5 cut(s) 153, 427, 462, 495, 952
TseFI GTSAC 2 cut(s) 142, 950
TseI GCWGC 2 cut(s) 277, 391
Tsp45I GTSAC 2 cut(s) 142, 950
TspDTI ATGAA 1 cut(s) 896
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 5 cut(s) 153, 427, 462, 495, 952
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 1016
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.