Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008970

Physical Location & Seq

Genomic Coordinates Forward (+)

2253837 .. 2254217

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG015700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATATCCATTGCCTCTAACAACAAAAACTTTGTTGTTGTAGAGACGCCGGAAATCTCTCCCACTCTCATCTCCGACGTCATTTTCGCCTCTCAGACCCAACCGGAGAAACAGCAGCCAACCACCACTCATCATGATCATGTCTTCAAATCTAAGCTTTCGGACCTTCCCAACATCTCCAACCACCTACCTCTCCACACCTACTGCTTCAAAAACATCTCCAACTTCTCCAAACGACCCTGTCTCATCGTCGGCTCCATCGGAAAAACCTATACCTTTTTCGAAACCCACCTCATTTCCCAAAAGACCAGAGCCGGCCTCTCCAAGCTTGGCATCACCAAAGGCGATGTGATCATGATCCTCCTCCCAAACTGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

126

Amino Acids

14.0

Weight (kDa)

9.1

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65060 AT1G65060
fragaria_vesca	FvH4_7g33990 FvH4_7g33990
malus_domestica	MD01G1236300.v1.1 MD07G1309000.v1.1
prunus_persica	Prupe.2G326300_v2.0.a1
pyrus_communis	pycom01g24420 pycom07g28100
rosa_chinensis	RchiOBHm_Chr1g0384231
rosa_laevigata	RLG00000026055
rosa_multiflora	Rmu_co8391797.1_g000001 Rmu_sc0011271.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276820
rosa_rugosa	Rorug01G0446000
rosa_samantha	Rh1AG471500 Rh1BG429300 Rh1CG441900 Rh1DG462000 Rh6BG015700 Rh7CG464300
rosa_wichuraiana	Rw1G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	352
AcyI	GRCGYC	2 cut(s)	47, 78
AgsI	TTSAA	2 cut(s)	148, 211
AluBI	AGCT	2 cut(s)	157, 328
AluI	AGCT	2 cut(s)	157, 328
Alw26I	GTCTC	2 cut(s)	38, 248
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	266
BclI	TGATCA	2 cut(s)	136, 351
BcoDI	GTCTC	2 cut(s)	38, 248
BfaI	CTAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
Bpu14I	TTCGAA	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	47, 78
BsaWI	WCCGGW	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	356
BseJI	GATNNNNATC	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	50, 104, 315
BsmAI	GTCTC	2 cut(s)	38, 248
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	136, 351, 357
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	2 cut(s)	133, 354
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	3 cut(s)	136, 351, 357
BssNI	GRCGYC	2 cut(s)	47, 78
Bst4CI	ACNGT	1 cut(s)	374
BstACI	GRCGYC	2 cut(s)	47, 78
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	93, 153
BstKTI	GATC	3 cut(s)	139, 354, 360
BstMAI	GTCTC	2 cut(s)	38, 248
BstMBI	GATC	3 cut(s)	136, 351, 357
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	316
CciI	TCATGA	2 cut(s)	133, 354
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	55
CviAII	CATG	3 cut(s)	134, 140, 355
CviJI	RGCY	6 cut(s)	118, 157, 255, 314, 318, 328
CviKI_1	RGCY	6 cut(s)	118, 157, 255, 314, 318, 328
DdeI	CTNAG	2 cut(s)	93, 153
DpnI	GATC	3 cut(s)	138, 353, 359
DpnII	GATC	3 cut(s)	136, 351, 357
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	3 cut(s)	137, 143, 358
FaiI	YATR	4 cut(s)	135, 141, 273, 356
FatI	CATG	3 cut(s)	133, 139, 354
FbaI	TGATCA	2 cut(s)	136, 351
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	3 cut(s)	50, 104, 315
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	47, 78
Hin1II	CATG	3 cut(s)	137, 143, 358
HindIII	AAGCTT	2 cut(s)	155, 326
HpaII	CCGG	3 cut(s)	50, 104, 315
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	4 cut(s)	76, 96, 163, 263
Hpy188III	TCNNGA	2 cut(s)	134, 355
Hpy99I	CGWCG	2 cut(s)	80, 254
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	93, 153
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	2 cut(s)	47, 78
Hsp92II	CATG	3 cut(s)	137, 143, 358
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	136, 351
Kzo9I	GATC	3 cut(s)	136, 351, 357
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	5 cut(s)	63, 117, 253, 322, 328
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	379
MaeII	ACGT	1 cut(s)	78
MalI	GATC	3 cut(s)	138, 353, 359
MboI	GATC	3 cut(s)	136, 351, 357
MboII	GAAGA	1 cut(s)	136
MmeI	TCCRAC	3 cut(s)	99, 204, 246
MnlI	CCTC	7 cut(s)	25, 100, 201, 302, 329, 371, 374
MroNI	GCCGGC	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	3 cut(s)	50, 104, 315
NaeI	GCCGGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	136, 351, 357
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	3 cut(s)	137, 143, 358
NlaIV	GGNNCC	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	282
PagI	TCATGA	2 cut(s)	133, 354
PdiI	GCCGGC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	138
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	3 cut(s)	136, 351, 357
Sau96I	GGNCC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	138
SspMI	CTAG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	282
TseI	GCWGC	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	163
XspI	CTAG	1 cut(s)	379
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.