Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008970

Physical Location & Seq

Genomic Coordinates Reverse (-)

66527644 .. 66531298

Gene Structure 3655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG462000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGATATCCATCGCCTCTAACAACAACAACTCTGTTGTTGTTGAGACGCCGGAAATTTCTCCCACTCTCATCTCCGACGTCGTTTCCACCTCTCAGACCCAACCGGAGAAGCAGCAGCCAACCACCACCACTCATCATGATCATGTCTTCAAATCCAAGCTTCCGGACCTTCCCAACATTTCCAACCACCTCCCTCTCCACACCTACTGCTTCGAGAACATCTCCGACTTCTCCGACCGACCCTGTCTCATCGTCGGCTCCACCGGAAAAACCTACACCTTCTCCGAAACCCACCTCATTTCCCAAAAGACCGGAGCCGGCCTCTCCAAGCTTGGCATCACCAAAGGCGATGTGATCATGATCCTCCTCCCAAACTGCGCCGAGTTCACCTTCGCATTCATGGGAGCTTCCATGATCGGCGCCGTCACAACCACAGCCAACCCCTTCTACACCGCCTCCGAAATCTTCAAGCAATTCAAGGCCTCCAACGCCAAGCTCATCATCACTCAATCCACATACGTAGACAAGCTCCGACACTCCGGTACCAGCTCTGATCAATACCCGATGCTCGGCGAACATTTTCAAGTGGTCACCATCGACGACCCTCCCATGAACTGCTTACATTTCTCAGTCCTCTCAGACGCCAACGAAAACGAACTTCCGGAGGTTTCCATTGATCCAGAGGACACTGTAGCGTTACCTTTCTCTTCAGGAACTACAGGACTTCCAAAAGGAGTGATTCTAACTCACAAGAGTCTGATCACAAGTGTGGCTCAGCAAGTGGACGGAGAGAATCCAAACCTGTACTTGAAGGAAGACGATGTCGTTTTGTGCGTGCTGCCATTGTTCCATATCTACTCCTTGAACAGTGTCTTGTTGTGTTCTCTCAGAGCAGGGGCGGCGGTTTTGGTAATGCACAAGTTTGAGATTGGGACGCTTTTGGAGCTCATACAGAAGTACAGAGTGTCTGTGGCGGCGGTGGTGCCACCGCTGGTGATAGCGCTGGCGAAGAATCCTATGGTGGCGGACTATGATCTCAGCTCTATTAGAGCGATCTTATCCGGAGCGGCGCCGCTGGGAAAGGAACTAGAGGAGGCGTTGAGGAGCCGTGTGCCTCAGGCGGTGTTGGGCCAGGGTTATGGGATGACAGAGGCAGGGCCGGTGCTATCAATGTGCCTGGCATTCGCAAAGCAACCGTTTCCAACGAAGTCAGGGTCATGCGGCACCGTGGTTCGAAATGCAGAGCTCAAAGTCATCGAACCCGAAACTGGTCGCTCCCTCGGCTACAACCAGCGTGGCGAGATTTGCATCCGTGGCTCTCAAATTATGAAAGGATATTTGAACGACGATGAGGCCACGGCAACCACCGTAGATGTCGAGGGATGGCTTCACACCGGCGACGTTGGCTATGTGGACGATGACGATGAGGTTTTCATCGTTGACAGAGTTAAGGAGCTCATCAAATTCAAAGGCTTCCAAGTGCCACCAGCTGAACTAGAAGCCCTCCTTGTAAGCCACCAATCCATTGCAGATGCAGCTGTTGTTCCGCAAAAAGATGATGCTGCAGGGGAAGTTCCGGTTGCATTCGTGGTTCGATCTAATGGTAATGAACTTACTGAAGAGGCTATAAAAGAATTTGTAGCAAAGCAGGTGGTGTTTTACAAGAGACTGCACAAGGTCTACTTCGTACATGCAATTCCGAAATCTCCGTCTGGAAAAATCTTAAGAAAAGACCTCAGAGCCAAGCTAGCCACTCCGAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

588

Amino Acids

63.86

Weight (kDa)

5.49

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	72 - 447	8.3e-94	AMP-binding enzyme
AMP-binding_C	PF13193	498 - 573	3.4e-18	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65060 AT1G65060
fragaria_vesca	FvH4_7g33990 FvH4_7g33990
malus_domestica	MD01G1236300.v1.1 MD07G1309000.v1.1
prunus_persica	Prupe.2G326300_v2.0.a1
pyrus_communis	pycom01g24420 pycom07g28100
rosa_chinensis	RchiOBHm_Chr1g0384231
rosa_laevigata	RLG00000026055
rosa_multiflora	Rmu_co8391797.1_g000001 Rmu_sc0011271.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276820
rosa_rugosa	Rorug01G0446000
rosa_samantha	Rh1AG471500 Rh1BG429300 Rh1CG441900 Rh1DG462000 Rh6BG015700 Rh7CG464300
rosa_wichuraiana	Rw1G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1639
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	1639
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	5 cut(s)	419, 542, 982, 1069, 1223
AccBSI	CCGCTC	1 cut(s)	1067
AccI	GTMKAC	2 cut(s)	522, 1680
AccIII	TCCGGA	3 cut(s)	163, 661, 1061
AclI	AACGTT	1 cut(s)	1761
AclWI	GGATC	2 cut(s)	355, 671
AcsI	RAATTY	3 cut(s)	54, 1463, 1634
AcuI	CTGAAG	2 cut(s)	693, 1638
AcyI	GRCGYC	5 cut(s)	47, 78, 420, 642, 1070
AfaI	GTAC	4 cut(s)	544, 806, 959, 1689
AfeI	AGCGCT	1 cut(s)	1002
AfiI	CCNNNNNNNGG	2 cut(s)	569, 1268
AflII	CTTAAG	1 cut(s)	1723
AgsI	TTSAA	8 cut(s)	151, 469, 478, 584, 811, 865, 1342, 1468
AjnI	CCWGG	2 cut(s)	1131, 1176
AleI	CACNNNNGTG	1 cut(s)	767
Alw21I	GWGCWC	3 cut(s)	948, 1248, 1458
Alw26I	GTCTC	3 cut(s)	38, 251, 1660
AlwI	GGATC	2 cut(s)	355, 671
Aor13HI	TCCGGA	3 cut(s)	163, 661, 1061
Aor51HI	AGCGCT	1 cut(s)	1002
AoxI	GGCC	5 cut(s)	319, 480, 1129, 1157, 1353
ApeKI	GCWGC	5 cut(s)	112, 115, 838, 1535, 1562
ApoI	RAATTY	3 cut(s)	54, 1463, 1634
ArsI	GACNNNNNNTTYG	4 cut(s)	1199, 1231, 1694, 1726
Asp700I	GAANNNNTTC	1 cut(s)	579
Asp718I	GGTACC	1 cut(s)	542
AspLEI	GCGC	4 cut(s)	380, 422, 1003, 1072
AspS9I	GGNCC	3 cut(s)	166, 1129, 1157
AsuHPI	GGTGA	4 cut(s)	331, 379, 583, 1006
AsuII	TTCGAA	1 cut(s)	1234
AsuNHI	GCTAGC	1 cut(s)	1747
AvaII	GGWCC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	1116
BaeI	ACNNNNGTAYC	2 cut(s)	526, 559
BanI	GGYRCC	5 cut(s)	419, 542, 982, 1069, 1223
BanII	GRGCYC	3 cut(s)	948, 1248, 1458
BbsI	GAAGAC	2 cut(s)	139, 822
Bbv12I	GWGCWC	3 cut(s)	948, 1248, 1458
BbvI	GCAGC	5 cut(s)	124, 127, 825, 1547, 1549
BccI	CCATC	3 cut(s)	17, 602, 1377
BceAI	ACGGC	3 cut(s)	407, 1092, 1374
BciT130I	CCWGG	2 cut(s)	1133, 1178
BclI	TGATCA	4 cut(s)	139, 354, 553, 759
BcoDI	GTCTC	3 cut(s)	38, 251, 1660
BfaI	CTAG	3 cut(s)	1088, 1496, 1748
BfmI	CTRYAG	3 cut(s)	690, 717, 1563
BfoI	RGCGCY	3 cut(s)	423, 1004, 1073
BfrI	CTTAAG	1 cut(s)	1723
BfuAI	ACCTGC	1 cut(s)	1639
BlpI	GCTNAGC	1 cut(s)	774
Bme1390I	CCNGG	2 cut(s)	1133, 1178
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	166, 1129, 1157
BmiI	GGNNCC	8 cut(s)	259, 316, 421, 544, 984, 1071, 1106, 1225
BmrFI	CCNGG	2 cut(s)	1133, 1178
BmsI	GCATC	5 cut(s)	345, 555, 1317, 1522, 1549
BmtI	GCTAGC	1 cut(s)	1751
BpiI	GAAGAC	2 cut(s)	139, 822
BplI	GAGNNNNNCTC	4 cut(s)	206, 238, 306, 338
Bpu1102I	GCTNAGC	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	1234
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	3 cut(s)	8, 359, 1307
BsaHI	GRCGYC	5 cut(s)	47, 78, 420, 642, 1070
BsaJI	CCNNGG	5 cut(s)	1132, 1227, 1279, 1312, 1356
BsaWI	WCCGGW	8 cut(s)	103, 163, 263, 311, 539, 661, 1061, 1576
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 1268
Bse118I	RCCGGY	3 cut(s)	317, 1159, 1394
Bse1I	ACTGG	1 cut(s)	1273
Bse21I	CCTNAGG	1 cut(s)	1116
Bse3DI	GCAATG	1 cut(s)	1524
Bse8I	GATNNNNATC	3 cut(s)	8, 359, 1307
BseAI	TCCGGA	3 cut(s)	163, 661, 1061
BseBI	CCWGG	2 cut(s)	1133, 1178
BseDI	CCNNGG	5 cut(s)	1132, 1227, 1279, 1312, 1356
BseGI	GGATG	3 cut(s)	1149, 1308, 1388
BseJI	GATNNNNATC	3 cut(s)	8, 359, 1307
BseLI	CCNNNNNNNGG	2 cut(s)	569, 1268
BseMI	GCAATG	1 cut(s)	1524
BseMII	CTCAG	8 cut(s)	107, 642, 651, 788, 901, 1051, 1130, 1750
BseNI	ACTGG	1 cut(s)	1273
BseRI	GAGGAG	3 cut(s)	356, 1106, 1117
BseXI	GCAGC	5 cut(s)	124, 127, 825, 1547, 1549
BseYI	CCCAGC	1 cut(s)	1075
BsgI	GTGCAG	1 cut(s)	1655
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	5 cut(s)	321, 482, 1131, 1159, 1355
BshNI	GGYRCC	5 cut(s)	419, 542, 982, 1069, 1223
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	3 cut(s)	948, 1248, 1458
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	2 cut(s)	569, 1268
BsmAI	GTCTC	3 cut(s)	38, 251, 1660
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	946
BsmI	GAATGC	3 cut(s)	395, 1181, 1583
BsnI	GGCC	5 cut(s)	321, 482, 1131, 1159, 1355
Bsp119I	TTCGAA	1 cut(s)	1234
Bsp1286I	GDGCHC	3 cut(s)	948, 1248, 1458
Bsp13I	TCCGGA	3 cut(s)	163, 661, 1061
Bsp1720I	GCTNAGC	1 cut(s)	774
BspANI	GGCC	5 cut(s)	321, 482, 1131, 1159, 1355
BspCNI	CTCAG	8 cut(s)	106, 641, 650, 787, 900, 1050, 1129, 1749
BspEI	TCCGGA	3 cut(s)	163, 661, 1061
BspHI	TCATGA	2 cut(s)	136, 357
BspLI	GGNNCC	8 cut(s)	259, 316, 421, 544, 984, 1071, 1106, 1225
BspMAI	CTGCAG	1 cut(s)	1567
BspMI	ACCTGC	1 cut(s)	1639
BspOI	GCTAGC	1 cut(s)	1751
BspPI	GGATC	2 cut(s)	355, 671
BspT104I	TTCGAA	1 cut(s)	1234
BspT107I	GGYRCC	5 cut(s)	419, 542, 982, 1069, 1223
BspTI	CTTAAG	1 cut(s)	1723
BsrBI	CCGCTC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	1524
BsrFI	RCCGGY	3 cut(s)	317, 1159, 1394
BsrI	ACTGG	1 cut(s)	1273
BssAI	RCCGGY	3 cut(s)	317, 1159, 1394
BssECI	CCNNGG	5 cut(s)	1132, 1227, 1279, 1312, 1356
BssNI	GRCGYC	5 cut(s)	47, 78, 420, 642, 1070
Bst2UI	CCWGG	2 cut(s)	1133, 1178
Bst4CI	ACNGT	5 cut(s)	691, 869, 1197, 1228, 1369
Bst6I	CTCTTC	2 cut(s)	712, 1614
BstACI	GRCGYC	5 cut(s)	47, 78, 420, 642, 1070
BstAFI	CTTAAG	1 cut(s)	1723
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	1234
BstC8I	GCNNGC	4 cut(s)	319, 836, 1005, 1749
BstDEI	CTNAG	8 cut(s)	93, 628, 637, 774, 887, 1037, 1116, 1736
BstDSI	CCRYGG	3 cut(s)	1227, 1312, 1356
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	1149, 1308, 1388
BstH2I	RGCGCY	3 cut(s)	423, 1004, 1073
BstHHI	GCGC	4 cut(s)	380, 422, 1003, 1072
BstMAI	GTCTC	3 cut(s)	38, 251, 1660
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	9 cut(s)	488, 899, 943, 1281, 1305, 1314, 1404, 1535, 1748
BstNI	CCWGG	2 cut(s)	1133, 1178
BstNSI	RCATGY	1 cut(s)	1694
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	1131, 1176
BstSFI	CTRYAG	3 cut(s)	690, 717, 1563
BstSNI	TACGTA	1 cut(s)	520
BstV1I	GCAGC	5 cut(s)	124, 127, 825, 1547, 1549
BstV2I	GAAGAC	2 cut(s)	139, 822
BstXI	CCANNNNNNTGG	1 cut(s)	1139
Bsu36I	CCTNAGG	1 cut(s)	1116
BsuRI	GGCC	5 cut(s)	321, 482, 1131, 1159, 1355
BtgI	CCRYGG	3 cut(s)	1227, 1312, 1356
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	1149, 1308, 1388
BtsIMutI	CAGTG	2 cut(s)	687, 874
BveI	ACCTGC	1 cut(s)	1639
Cac8I	GCNNGC	4 cut(s)	319, 836, 1005, 1749
CciI	TCATGA	2 cut(s)	136, 357
CfoI	GCGC	4 cut(s)	380, 422, 1003, 1072
Cfr10I	RCCGGY	3 cut(s)	317, 1159, 1394
Cfr13I	GGNCC	3 cut(s)	166, 1129, 1157
CseI	GACGC	3 cut(s)	55, 650, 943
Csp6I	GTAC	4 cut(s)	543, 805, 958, 1688
CspCI	CAANNNNNGTGG	4 cut(s)	1276, 1311, 1632, 1667
CviAII	CATG	8 cut(s)	137, 143, 358, 400, 412, 610, 1218, 1691
CviQI	GTAC	4 cut(s)	543, 805, 958, 1688
DdeI	CTNAG	8 cut(s)	93, 628, 637, 774, 887, 1037, 1116, 1736
DinI	GGCGCC	2 cut(s)	421, 1071
Eam1104I	CTCTTC	2 cut(s)	712, 1614
EarI	CTCTTC	2 cut(s)	712, 1614
EciI	GGCGGA	1 cut(s)	1040
Ecl136II	GAGCTC	3 cut(s)	946, 1246, 1456
Eco105I	TACGTA	1 cut(s)	520
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	3 cut(s)	948, 1248, 1458
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	1002
Eco53kI	GAGCTC	3 cut(s)	946, 1246, 1456
Eco57I	CTGAAG	2 cut(s)	693, 1638
Eco81I	CCTNAGG	1 cut(s)	1116
Eco91I	GGTNACC	1 cut(s)	589
EcoICRI	GAGCTC	3 cut(s)	946, 1246, 1456
EcoO65I	GGTNACC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	1131, 1176
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	948, 1248, 1458
EgeI	GGCGCC	2 cut(s)	421, 1071
EheI	GGCGCC	2 cut(s)	421, 1071
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	8 cut(s)	140, 146, 361, 403, 415, 613, 1221, 1694
FalI	AAGNNNNNCTT	4 cut(s)	1491, 1523, 1667, 1699
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	8 cut(s)	136, 142, 357, 399, 411, 609, 1217, 1690
FbaI	TGATCA	4 cut(s)	139, 354, 553, 759
FblI	GTMKAC	2 cut(s)	522, 1680
FokI	GGATG	3 cut(s)	1156, 1295, 1395
FriOI	GRGCYC	3 cut(s)	948, 1248, 1458
FspBI	CTAG	3 cut(s)	1088, 1496, 1748
GlaI	GCGC	4 cut(s)	379, 421, 1002, 1071
GsaI	CCCAGC	1 cut(s)	1079
HaeII	RGCGCY	3 cut(s)	423, 1004, 1073
HaeIII	GGCC	5 cut(s)	321, 482, 1131, 1159, 1355
HgaI	GACGC	3 cut(s)	55, 650, 943
HhaI	GCGC	4 cut(s)	380, 422, 1003, 1072
Hin1I	GRCGYC	5 cut(s)	47, 78, 420, 642, 1070
Hin1II	CATG	8 cut(s)	140, 146, 361, 403, 415, 613, 1221, 1694
Hin6I	GCGC	4 cut(s)	378, 420, 1001, 1070
HinP1I	GCGC	4 cut(s)	378, 420, 1001, 1070
HincII	GTYRAC	1 cut(s)	1441
HindII	GTYRAC	1 cut(s)	1441
HindIII	AAGCTT	2 cut(s)	158, 329
HinfI	GANTC	4 cut(s)	739, 754, 793, 1012
HphI	GGTGA	4 cut(s)	331, 379, 583, 1006
Hpy166II	GTNNAC	6 cut(s)	387, 523, 784, 1414, 1441, 1681
Hpy188III	TCNNGA	9 cut(s)	137, 164, 214, 358, 662, 680, 711, 1062, 1713
Hpy8I	GTNNAC	6 cut(s)	387, 523, 784, 1414, 1441, 1681
Hpy99I	CGWCG	6 cut(s)	80, 83, 257, 602, 1349, 1403
HpyAV	CCTTC	5 cut(s)	179, 289, 400, 454, 805
HpyCH4III	ACNGT	5 cut(s)	691, 869, 1197, 1228, 1369
HpyCH4IV	ACGT	4 cut(s)	78, 519, 1401, 1761
HpyCH4V	TGCA	9 cut(s)	916, 1241, 1308, 1529, 1535, 1565, 1583, 1672, 1694
HpyF10VI	GCNNNNNNNGC	9 cut(s)	488, 899, 943, 1281, 1305, 1314, 1404, 1535, 1748
HpyF3I	CTNAG	8 cut(s)	93, 628, 637, 774, 887, 1037, 1116, 1736
HpySE526I	ACGT	4 cut(s)	78, 519, 1401, 1761
Hsp92I	GRCGYC	5 cut(s)	47, 78, 420, 642, 1070
Hsp92II	CATG	8 cut(s)	140, 146, 361, 403, 415, 613, 1221, 1694
HspAI	GCGC	4 cut(s)	378, 420, 1001, 1070
KasI	GGCGCC	2 cut(s)	419, 1069
Kpn2I	TCCGGA	3 cut(s)	163, 661, 1061
KpnI	GGTACC	1 cut(s)	546
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Ksp22I	TGATCA	4 cut(s)	139, 354, 553, 759
LmnI	GCTCC	9 cut(s)	263, 314, 404, 534, 943, 1064, 1104, 1280, 1453
Lsp1109I	GCAGC	5 cut(s)	124, 127, 825, 1547, 1549
LweI	GCATC	5 cut(s)	345, 555, 1317, 1522, 1549
MaeI	CTAG	3 cut(s)	1088, 1496, 1748
MaeII	ACGT	4 cut(s)	78, 519, 1401, 1761
MaeIII	GTNAC	3 cut(s)	424, 589, 696
MbiI	CCGCTC	1 cut(s)	1067
MboII	GAAGA	6 cut(s)	139, 457, 699, 827, 1021, 1631
MhlI	GDGCHC	3 cut(s)	948, 1248, 1458
MluCI	AATT	6 cut(s)	54, 473, 1323, 1463, 1634, 1695
Mly113I	GGCGCC	2 cut(s)	420, 1070
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	7 cut(s)	99, 207, 249, 258, 510, 556, 1226
MroI	TCCGGA	3 cut(s)	163, 661, 1061
MroNI	GCCGGC	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	3 cut(s)	1449, 1724, 1765
MslI	CAYNNNNRTG	2 cut(s)	141, 767
MspA1I	CMGCKG	4 cut(s)	991, 1075, 1490, 1538
MspCI	CTTAAG	1 cut(s)	1723
MspR9I	CCNGG	2 cut(s)	1133, 1178
Mva1269I	GAATGC	3 cut(s)	395, 1181, 1583
MvaI	CCWGG	2 cut(s)	1133, 1178
MwoI	GCNNNNNNNGC	9 cut(s)	488, 899, 943, 1281, 1305, 1314, 1404, 1535, 1748
NaeI	GCCGGC	1 cut(s)	319
NarI	GGCGCC	2 cut(s)	420, 1070
NgoMIV	GCCGGC	1 cut(s)	317
NheI	GCTAGC	1 cut(s)	1747
NlaIII	CATG	8 cut(s)	140, 146, 361, 403, 415, 613, 1221, 1694
NlaIV	GGNNCC	8 cut(s)	259, 316, 421, 544, 984, 1071, 1106, 1225
NmeAIII	GCCGAG	3 cut(s)	406, 549, 1260
NmuCI	GTSAC	2 cut(s)	424, 589
NspI	RCATGY	1 cut(s)	1694
NspV	TTCGAA	1 cut(s)	1234
OliI	CACNNNNGTG	1 cut(s)	767
PagI	TCATGA	2 cut(s)	136, 357
PaqCI	CACCTGC	1 cut(s)	1639
PceI	AGGCCT	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PctI	GAATGC	3 cut(s)	395, 1181, 1583
PdiI	GCCGGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	739, 793, 1012
PflFI	GACNNNGTC	2 cut(s)	243, 821
PleI	GAGTC	1 cut(s)	762
PluTI	GGCGCC	2 cut(s)	423, 1073
PpsI	GAGTC	1 cut(s)	762
Ppu21I	YACGTR	1 cut(s)	520
Psp124BI	GAGCTC	3 cut(s)	948, 1248, 1458
Psp1406I	AACGTT	1 cut(s)	1761
Psp6I	CCWGG	2 cut(s)	1131, 1176
PspEI	GGTNACC	1 cut(s)	589
PspFI	CCCAGC	1 cut(s)	1075
PspGI	CCWGG	2 cut(s)	1131, 1176
PspN4I	GGNNCC	8 cut(s)	259, 316, 421, 544, 984, 1071, 1106, 1225
PspPI	GGNCC	3 cut(s)	166, 1129, 1157
PstI	CTGCAG	1 cut(s)	1567
PsyI	GACNNNGTC	2 cut(s)	243, 821
PvuII	CAGCTG	2 cut(s)	1490, 1538
RsaI	GTAC	4 cut(s)	544, 806, 959, 1689
RsaNI	GTAC	4 cut(s)	543, 805, 958, 1688
RseI	CAYNNNNRTG	2 cut(s)	141, 767
SacI	GAGCTC	3 cut(s)	948, 1248, 1458
SaqAI	TTAA	3 cut(s)	1449, 1724, 1765
Sau96I	GGNCC	3 cut(s)	166, 1129, 1157
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	2 cut(s)	1133, 1178
SduI	GDGCHC	3 cut(s)	948, 1248, 1458
SfaNI	GCATC	5 cut(s)	345, 555, 1317, 1522, 1549
SfcI	CTRYAG	3 cut(s)	690, 717, 1563
SfoI	GGCGCC	2 cut(s)	421, 1071
SfuI	TTCGAA	1 cut(s)	1234
SgrAI	CRCCGGYG	1 cut(s)	1394
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	141, 767
SmlI	CTYRAG	1 cut(s)	1723
SmoI	CTYRAG	1 cut(s)	1723
SnaBI	TACGTA	1 cut(s)	520
Sse9I	AATT	6 cut(s)	54, 473, 1323, 1463, 1634, 1695
SseBI	AGGCCT	1 cut(s)	482
SspDI	GGCGCC	2 cut(s)	419, 1069
SspMI	CTAG	3 cut(s)	1088, 1496, 1748
SstI	GAGCTC	3 cut(s)	948, 1248, 1458
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	1131, 1176
TaaI	ACNGT	5 cut(s)	691, 869, 1197, 1228, 1369
TaiI	ACGT	4 cut(s)	81, 522, 1404, 1764
TaqI	TCGA	6 cut(s)	213, 597, 1234, 1257, 1377, 1594
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	6 cut(s)	54, 473, 1323, 1463, 1634, 1695
TatI	WGTACW	2 cut(s)	804, 957
TauI	GCSGC	5 cut(s)	902, 977, 1070, 1075, 1224
TfiI	GAWTC	3 cut(s)	739, 793, 1012
Tru1I	TTAA	3 cut(s)	1449, 1724, 1765
Tru9I	TTAA	3 cut(s)	1449, 1724, 1765
TscAI	CASTG	2 cut(s)	694, 874
TseFI	GTSAC	2 cut(s)	424, 589
TseI	GCWGC	5 cut(s)	112, 115, 838, 1535, 1562
Tsp45I	GTSAC	2 cut(s)	424, 589
TspDTI	ATGAA	5 cut(s)	388, 626, 1343, 1423, 1623
TspGWI	ACGGA	3 cut(s)	801, 1301, 1698
TspRI	CASTG	2 cut(s)	694, 874
Tth111I	GACNNNGTC	2 cut(s)	243, 821
Vha464I	CTTAAG	1 cut(s)	1723
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	3 cut(s)	54, 1463, 1634
XceI	RCATGY	1 cut(s)	1694
XmiI	GTMKAC	2 cut(s)	522, 1680
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	3 cut(s)	1088, 1496, 1748
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.